Prupe.6G302300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0018521
Physical Location & Seq
Reverse (-)
27419628 .. 27419921
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G302300.1

Sequence Viewer

Length: 294 bp
ATGAGGAGGGCATACCGAAAAATGTGGCGGGTGGTGCCTTGCATGAGCAGAAAGAATTTCCGGACTGACTCCTGGAAAGACATAGAGGAAATACTCAAGAGTAAGCTAGCAACTATCAAGGAGGAGCCAGAGACATGTGAGGAAAGCCTTACACCGCCACCAAGACTATGGCGCTTGGCAAAGAAGGGACAGAAGATGGGATCAAAGGACATTAGAAGGCACTTTCTCATGCCAAACTTCAGCCTCAAAGACTCTTATTTGCTATTCATGACTGGCTTTGCATCTAAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.66

Weight (kDa)

10.24

Isoelectric Point (pI)

71.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018521)

Species Orthologous Gene IDs
prunus_persica Prupe.6G302300_v2.0.a1
pyrus_communis pycom04g16240 pycom12g18350
rosa_multiflora Rmu_co8374625.1_g000001 Rmu_sc0004343.1_g000016 Rmu_sc0006910.1_g000002 Rmu_sc0033812.1_g000003
rosa_roxburghii Rroxscaffold_6G00420570
rosa_rugosa Rorug03G0033000
rosa_samantha Rh3CG094400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 2 cut(s) 28, 155
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 223
AflIII ACRYGT 1 cut(s) 134
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 60
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 34
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 107
BfoI RGCGCY 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 36, 126
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 290
BmtI GCTAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 19, 137
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 201
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 2 cut(s) 28, 155
BspEI TCCGGA 1 cut(s) 60
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 36, 126
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 277
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 174
CviAII CATG 4 cut(s) 43, 135, 229, 268
CviJI RGCY 5 cut(s) 106, 127, 147, 243, 276
CviKI_1 RGCY 5 cut(s) 106, 127, 147, 243, 276
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 71
FaeI CATG 4 cut(s) 46, 138, 232, 271
FaiI YATR 7 cut(s) 13, 44, 83, 136, 169, 230, 269
FaqI GGGAC 1 cut(s) 201
FatI CATG 4 cut(s) 42, 134, 228, 267
FauI CCCGC 1 cut(s) 21
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 175
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 174
Hin1II CATG 4 cut(s) 46, 138, 232, 271
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 2 cut(s) 68, 251
HpaII CCGG 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 61, 97, 268
HpyAV CCTTC 2 cut(s) 178, 210
HpyCH4V TGCA 2 cut(s) 42, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 4 cut(s) 46, 138, 232, 271
HspAI GCGC 1 cut(s) 172
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 58, 74, 85, 141, 258
LweI GCATC 1 cut(s) 290
MaeI CTAG 1 cut(s) 107
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 205
MluCI AATT 1 cut(s) 55
MlyI GAGTC 2 cut(s) 62, 245
MnlI CCTC 4 cut(s) 79, 115, 133, 254
MroI TCCGGA 1 cut(s) 60
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 1 cut(s) 34
NdeII GATC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 4 cut(s) 46, 138, 232, 271
NlaIV GGNNCC 2 cut(s) 36, 126
NspI RCATGY 1 cut(s) 138
PagI TCATGA 1 cut(s) 267
PciI ACATGT 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 71
PleI GAGTC 2 cut(s) 62, 245
PpsI GAGTC 2 cut(s) 62, 245
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 36, 126
Sau3AI GATC 1 cut(s) 200
SchI GAGTC 2 cut(s) 62, 245
ScrFI CCNGG 1 cut(s) 73
SetI ASST 2 cut(s) 108, 293
SfaNI GCATC 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 1 cut(s) 55
SsiI CCGC 2 cut(s) 28, 155
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 71
TasI AATT 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 256
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.