Rmu_sc0004343.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004343.1
OG0018521
Physical Location & Seq
Reverse (-)
55267 .. 55563
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004343.1_g000016.1.cds

Sequence Viewer

Length: 297 bp
atgaggatgaaggcatatcgaaaaatgtggagggtggtaccttgcatgagaaggaagtttctgagaactgattcctggaaagacattgaagaaatactcaagagcaagctagcaactatcaaggaagagcccgagaattgtgaggaaagcctcacgccgccaaggctatggtgcttgacgaaaaatgagaagaagattggatcgaagcagatgatcacaaggcactttcccatgccaaatttcagcctcaaagactcttatttgctcttcatgactggctttgcctctaagaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.83

Weight (kDa)

9.97

Isoelectric Point (pI)

60.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018521)

Species Orthologous Gene IDs
prunus_persica Prupe.6G302300_v2.0.a1
pyrus_communis pycom04g16240 pycom12g18350
rosa_multiflora Rmu_co8374625.1_g000001 Rmu_sc0004343.1_g000016 Rmu_sc0006910.1_g000002 Rmu_sc0033812.1_g000003
rosa_roxburghii Rroxscaffold_6G00420570
rosa_rugosa Rorug03G0033000
rosa_samantha Rh3CG094400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 238
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 131
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 37
AsuNHI GCTAGC 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 76
BclI TGATCA 1 cut(s) 213
BfaI CTAG 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 161
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 280
BshNI GGYRCC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 200, 213
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 113
BspPI GGATC 1 cut(s) 208
BspQI GCTCTTC 2 cut(s) 120, 272
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 2 cut(s) 200, 213
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 76
Bst6I CTCTTC 2 cut(s) 120, 272
BstC8I GCNNGC 2 cut(s) 107, 111
BstDEI CTNAG 2 cut(s) 62, 288
BstENI CCTNNNNNAGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 2 cut(s) 203, 216
BstMBI GATC 2 cut(s) 200, 213
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 168
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 107, 111
CciI TCATGA 1 cut(s) 270
Csp6I GTAC 1 cut(s) 38
CviAII CATG 3 cut(s) 46, 232, 271
CviJI RGCY 6 cut(s) 109, 130, 150, 166, 246, 279
CviKI_1 RGCY 6 cut(s) 109, 130, 150, 166, 246, 279
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 2 cut(s) 62, 288
DpnI GATC 2 cut(s) 202, 215
DpnII GATC 2 cut(s) 200, 213
Eam1104I CTCTTC 2 cut(s) 120, 272
EarI CTCTTC 2 cut(s) 120, 272
Eco130I CCWWGG 1 cut(s) 161
Eco24I GRGCYC 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 131
EcoNI CCTNNNNNAGG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 161
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 49, 235, 274
FaiI YATR 5 cut(s) 16, 47, 169, 233, 272
FatI CATG 3 cut(s) 45, 231, 270
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 110
GluI GCNGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 49, 235, 274
HinfI GANTC 2 cut(s) 71, 254
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 100, 271
HpyAV CCTTC 2 cut(s) 4, 45
HpyCH4V TGCA 1 cut(s) 45
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 2 cut(s) 62, 288
Hsp92II CATG 3 cut(s) 49, 235, 274
KpnI GGTACC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 200, 213
LguI GCTCTTC 2 cut(s) 120, 272
LpnPI CCDG 3 cut(s) 61, 88, 261
MaeI CTAG 1 cut(s) 110
MalI GATC 2 cut(s) 202, 215
MboI GATC 2 cut(s) 200, 213
MboII GAAGA 5 cut(s) 101, 137, 202, 205, 259
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 2 cut(s) 136, 238
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 6 cut(s) 24, 136, 161, 257, 285, 295
MroXI GAANNNNTTC 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 200, 213
NheI GCTAGC 1 cut(s) 109
NlaIII CATG 3 cut(s) 49, 235, 274
NlaIV GGNNCC 1 cut(s) 39
PagI TCATGA 1 cut(s) 270
PciSI GCTCTTC 2 cut(s) 120, 272
PdmI GAANNNNTTC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 74
PkrI GCNGC 1 cut(s) 159
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 39
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SapI GCTCTTC 2 cut(s) 120, 272
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 2 cut(s) 200, 213
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 132
SetI ASST 3 cut(s) 43, 111, 296
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 2 cut(s) 136, 238
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 1 cut(s) 161
TaqI TCGA 2 cut(s) 19, 203
TasI AATT 2 cut(s) 136, 238
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 23, 259
XagI CCTNNNNNAGG 1 cut(s) 289
XapI RAATTY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 70
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.