pycom04g16240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0018521
Physical Location & Seq
Reverse (-)
18973667 .. 18973966
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16240.1

Sequence Viewer

Length: 300 bp
ATGAGGAGGGCATATCGAAAATTGTGGCGGGCAGTGCCGTGCATGAGTCGGAAATATTTCCGGACTGACTCCTGGAAGGACACAGAGGAAATACTCAAGAGCAAGCTAGCAATTATTAAGGAGGAACCGGAGACGTGTGAGGAAAACCTTACGCCGCCGCGACTATGGCGGCTGGTGAAGAAGGGGCAGAATAAGATGGGATCAAAGTTGGACGTGGCAAGGAACTTTCGCATCCCAAATTTCAGCCTCAAGGAGTCTTATTGTCTGTTCATCCCTGGCATTGCACCTAAAAGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.79

Weight (kDa)

10.07

Isoelectric Point (pI)

53.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018521)

Species Orthologous Gene IDs
prunus_persica Prupe.6G302300_v2.0.a1
pyrus_communis pycom04g16240 pycom12g18350
rosa_multiflora Rmu_co8374625.1_g000001 Rmu_sc0004343.1_g000016 Rmu_sc0006910.1_g000002 Rmu_sc0033812.1_g000003
rosa_roxburghii Rroxscaffold_6G00420570
rosa_rugosa Rorug03G0033000
rosa_samantha Rh3CG094400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
AccII CGCG 1 cut(s) 160
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 4 cut(s) 28, 155, 158, 169
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 134
AjiI CACGTC 2 cut(s) 135, 214
AjnI CCWGG 2 cut(s) 71, 274
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 208
Aor13HI TCCGGA 1 cut(s) 60
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 187
AsuNHI GCTAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 73, 276
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 3 cut(s) 155, 158, 170
BlsI GCNGC 3 cut(s) 156, 159, 171
Bme1390I CCNGG 2 cut(s) 73, 276
BmgBI CACGTC 2 cut(s) 135, 214
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 73, 276
BmsI GCATC 1 cut(s) 240
BmtI GCTAGC 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 80, 233
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 2 cut(s) 60, 127
Bse3DI GCAATG 1 cut(s) 279
BseAI TCCGGA 1 cut(s) 60
BseBI CCWGG 2 cut(s) 73, 276
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 231, 270
BseMI GCAATG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 160
BsiSI CCGG 2 cut(s) 61, 128
BsmAI GTCTC 1 cut(s) 125
BsmBI CGTCTC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 4 cut(s) 28, 155, 158, 169
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 126
BspMI ACCTGC 1 cut(s) 285
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 73, 276
BstC8I GCNNGC 3 cut(s) 30, 104, 108
BstF5I GGATG 2 cut(s) 231, 270
BstFNI CGCG 1 cut(s) 160
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 34, 166
BstNI CCWGG 2 cut(s) 73, 276
BstSCI CCNGG 2 cut(s) 71, 274
BstUI CGCG 1 cut(s) 160
BtrI CACGTC 2 cut(s) 135, 214
BtsCI GGATG 2 cut(s) 231, 270
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 3 cut(s) 30, 104, 108
CviAII CATG 1 cut(s) 43
CviJI RGCY 3 cut(s) 106, 172, 246
CviKI_1 RGCY 3 cut(s) 106, 172, 246
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 71, 274
Esp3I CGTCTC 1 cut(s) 125
FaeI CATG 1 cut(s) 46
FaiI YATR 3 cut(s) 13, 44, 166
FatI CATG 1 cut(s) 42
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 155, 158, 170
FokI GGATG 2 cut(s) 218, 257
Fsp4HI GCNGC 3 cut(s) 155, 158, 170
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 155, 158, 170
HapII CCGG 2 cut(s) 61, 128
Hin1II CATG 1 cut(s) 46
HinfI GANTC 3 cut(s) 46, 68, 254
HpaII CCGG 2 cut(s) 61, 128
HphI GGTGA 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 61, 97
HpyAV CCTTC 2 cut(s) 70, 175
HpyCH4IV ACGT 2 cut(s) 134, 213
HpyCH4V TGCA 2 cut(s) 42, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 166
HpySE526I ACGT 2 cut(s) 134, 213
Hsp92II CATG 1 cut(s) 46
Kpn2I TCCGGA 1 cut(s) 60
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 8 cut(s) 58, 74, 85, 141, 158, 261, 280, 288
LweI GCATC 1 cut(s) 240
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 134, 213
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 190
MluCI AATT 3 cut(s) 20, 111, 238
MlyI GAGTC 3 cut(s) 55, 62, 263
MmeI TCCRAC 2 cut(s) 29, 189
MnlI CCTC 4 cut(s) 79, 115, 133, 257
MroI TCCGGA 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 56
MseI TTAA 1 cut(s) 117
MspI CCGG 2 cut(s) 61, 128
MspR9I CCNGG 2 cut(s) 73, 276
MvaI CCWGG 2 cut(s) 73, 276
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 34, 166
NdeII GATC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 56
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 3 cut(s) 156, 159, 171
PleI GAGTC 3 cut(s) 54, 62, 262
PpsI GAGTC 3 cut(s) 54, 62, 262
Psp6I CCWGG 2 cut(s) 71, 274
PspGI CCWGG 2 cut(s) 71, 274
PspN4I GGNNCC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 155, 158, 170
Sau3AI GATC 1 cut(s) 200
SchI GAGTC 3 cut(s) 55, 62, 263
ScrFI CCNGG 2 cut(s) 73, 276
SetI ASST 6 cut(s) 108, 137, 150, 216, 289, 299
SfaNI GCATC 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 95, 248
SmoI CTYRAG 2 cut(s) 95, 248
Sse9I AATT 3 cut(s) 20, 111, 238
SsiI CCGC 4 cut(s) 28, 155, 158, 169
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 71, 274
TaiI ACGT 2 cut(s) 137, 216
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 20, 111, 238
TauI GCSGC 3 cut(s) 157, 160, 172
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 259
TspRI CASTG 1 cut(s) 39
XapI RAATTY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.