pycom12g18350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0018521
Physical Location & Seq
Reverse (-)
20507897 .. 20508196
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18350.1

Sequence Viewer

Length: 300 bp
ATGAGAAGGGGATATCGGAAATTGTGGCGGGTGGTGCCGTGCATGAGCCGGAAATATTTTCGGACAGACTCCTGGAATGACATAGAGGAAATACTCAAGAGCAAGCTAGCAACCATTAAGGAGGAGCCAGAGACATGTGAGGAAAGTGTTACGCCGCCGCGACTATGGCGGCTGGTGAAGAAGGGGCAGAATAAGATGGGATCAAAGGTGGATGTGGCAAGGCACTTTCTCATCCCAAATTTCAACCTCAAAGAGACTTATTTTCTGTTCACCACTGGTTTTGCAAATAAAAGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.84

Weight (kDa)

10.01

Isoelectric Point (pI)

54.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018521)

Species Orthologous Gene IDs
prunus_persica Prupe.6G302300_v2.0.a1
pyrus_communis pycom04g16240 pycom12g18350
rosa_multiflora Rmu_co8374625.1_g000001 Rmu_sc0004343.1_g000016 Rmu_sc0006910.1_g000002 Rmu_sc0033812.1_g000003
rosa_roxburghii Rroxscaffold_6G00420570
rosa_rugosa Rorug03G0033000
rosa_samantha Rh3CG094400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 285
AccB1I GGYRCC 1 cut(s) 34
AccII CGCG 1 cut(s) 160
AciI CCGC 4 cut(s) 28, 155, 158, 169
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
Alw26I GTCTC 2 cut(s) 125, 248
AlwI GGATC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 187, 262
AsuNHI GCTAGC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 34
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 2 cut(s) 125, 248
BfaI CTAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 3 cut(s) 155, 158, 170
BlsI GCNGC 3 cut(s) 156, 159, 171
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 36, 126
BmrFI CCNGG 1 cut(s) 73
BmtI GCTAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 217, 231
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 34
BsiSI CCGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 125, 248
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 4 cut(s) 28, 155, 158, 169
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 36, 126
BspMI ACCTGC 1 cut(s) 285
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 280
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 104, 108
BstF5I GGATG 2 cut(s) 217, 231
BstFNI CGCG 1 cut(s) 160
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 2 cut(s) 125, 248
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 2 cut(s) 34, 166
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 71
BstUI CGCG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 217, 231
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 104, 108
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 2 cut(s) 43, 135
CviJI RGCY 4 cut(s) 48, 106, 127, 172
CviKI_1 RGCY 4 cut(s) 48, 106, 127, 172
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eco32I GATATC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 14
FaeI CATG 2 cut(s) 46, 138
FaiI YATR 4 cut(s) 44, 83, 136, 166
FatI CATG 2 cut(s) 42, 134
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 155, 158, 170
FokI GGATG 2 cut(s) 218, 224
Fsp4HI GCNGC 3 cut(s) 155, 158, 170
FspBI CTAG 1 cut(s) 107
GluI GCNGC 3 cut(s) 155, 158, 170
HapII CCGG 1 cut(s) 49
Hin1II CATG 2 cut(s) 46, 138
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 49
HphI GGTGA 2 cut(s) 187, 262
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 2 cut(s) 18, 63
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 2 cut(s) 42, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 166
Hsp92II CATG 2 cut(s) 46, 138
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 58, 62, 85, 141, 158, 261, 280
MaeI CTAG 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 190
MluCI AATT 2 cut(s) 20, 238
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 4 cut(s) 79, 115, 133, 257
MseI TTAA 1 cut(s) 117
MspI CCGG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 34, 166
NdeII GATC 1 cut(s) 200
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 2 cut(s) 46, 138
NlaIV GGNNCC 2 cut(s) 36, 126
NspI RCATGY 1 cut(s) 138
PciI ACATGT 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 3 cut(s) 156, 159, 171
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 36, 126
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 3 cut(s) 155, 158, 170
Sau3AI GATC 1 cut(s) 200
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 73
SetI ASST 4 cut(s) 108, 210, 249, 299
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 2 cut(s) 20, 238
SsiI CCGC 4 cut(s) 28, 155, 158, 169
SspI AATATT 1 cut(s) 56
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 71
TasI AATT 2 cut(s) 20, 238
TauI GCSGC 3 cut(s) 157, 160, 172
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 280
TspRI CASTG 1 cut(s) 280
XapI RAATTY 1 cut(s) 238
XceI RCATGY 1 cut(s) 138
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.