Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009169

Physical Location & Seq

Genomic Coordinates Forward (+)

27688961 .. 27690484

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G307100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCCGTTGGGGAAGTATTACTGCGAATACTGCGACAAGGAATTCCAAGACACCCCATCCGCCAGGCGACGCCATCTTCAAGGTCTCCAACACCTCAGAGCCAAAGCTCAATGGTACGACTCCTTCAAAGATCCCAGTCATGCTTATACGGAGGGCTTGACAAAAGGGGTTTGCAACCGCTTTGTAAAAACGGGATTTTGCCCATACGGGGATTCTTGTAGATATCTTCATCCCAAGAACAATCAGCAGAATATGGTTACTCAAGGGGCACCAGGTTTGATTGATAATAATCAGTCTTCAACTTTTCAAGAGAACCAGTTGGTGGGGGGCAGCTCTTTGCCAGATGTGGTGGTCAGAGATAGCATGGGAATGTCATGGGGCAATCTACCTCCATCTCTAATGCCTCCTCCAGAGGGTGGATATCCGCCGCTTCCTTTTGTGGACTGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH zf-U1

Protein Analysis

151

Amino Acids

16.85

Weight (kDa)

6.88

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26749 AT5G26749
fragaria_vesca	FvH4_6g08160 FvH4_6g08160 FvH4_6g08160 FvH4_6g08160
malus_domestica	MD12G1202300.v1.1
prunus_persica	Prupe.6G307100_v2.0.a1
pyrus_communis	pycom12g18890
rosa_chinensis	RchiOBHm_Chr3g0458031
rosa_laevigata	RLG00000025178
rosa_multiflora	Rmu_sc0000384.1_g000012
rosa_roxburghii	Rroxscaffold_6G00421340
rosa_rugosa	Rorug03G0024400 Rorug03G0024400 Rorug03G0024500
rosa_samantha	Rh3AG084900 Rh3BG087700 Rh3CG088200 Rh3DG088600
rosa_wichuraiana	Rw0G012410 Rw3G007230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	2 cut(s)	322, 416
AciI	CCGC	4 cut(s)	60, 178, 425, 428
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	208, 322, 413, 416
AgsI	TTSAA	4 cut(s)	80, 127, 300, 308
AjnI	CCWGG	2 cut(s)	62, 271
AluBI	AGCT	2 cut(s)	107, 333
AluI	AGCT	2 cut(s)	107, 333
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	3 cut(s)	64, 81, 400
BciT130I	CCWGG	2 cut(s)	64, 273
BcoDI	GTCTC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	331, 428
BlsI	GCNGC	2 cut(s)	332, 429
Bme1390I	CCNGG	2 cut(s)	64, 273
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	64, 273
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	4 cut(s)	208, 322, 413, 416
Bse1I	ACTGG	3 cut(s)	135, 316, 449
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	64, 273
BseGI	GGATG	2 cut(s)	56, 229
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	4 cut(s)	208, 322, 413, 416
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	3 cut(s)	135, 316, 449
BseRI	GAGGAG	1 cut(s)	396
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	342
BshNI	GGYRCC	1 cut(s)	268
BslI	CCNNNNNNNGG	4 cut(s)	208, 322, 413, 416
BsmAI	GTCTC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	4 cut(s)	60, 178, 425, 428
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	135, 316, 449
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	70
Bst2UI	CCWGG	2 cut(s)	64, 273
BstACI	GRCGYC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	56, 229
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	2 cut(s)	64, 273
BstSCI	CCNGG	2 cut(s)	62, 271
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	342
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtsCI	GGATG	2 cut(s)	56, 229
CseI	GACGC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	3 cut(s)	140, 364, 375
CviJI	RGCY	4 cut(s)	101, 107, 156, 333
CviKI_1	RGCY	4 cut(s)	101, 107, 156, 333
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EciI	GGCGGA	2 cut(s)	49, 414
Eco31I	GGTCTC	1 cut(s)	89
Eco32I	GATATC	2 cut(s)	224, 422
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	62, 271
EcoRV	GATATC	2 cut(s)	224, 422
FaeI	CATG	3 cut(s)	143, 367, 378
FaiI	YATR	6 cut(s)	141, 147, 205, 254, 365, 376
FatI	CATG	3 cut(s)	139, 363, 374
Fnu4HI	GCNGC	2 cut(s)	331, 428
FokI	GGATG	2 cut(s)	43, 216
Fsp4HI	GCNGC	2 cut(s)	331, 428
GluI	GCNGC	2 cut(s)	331, 428
GsuI	CTGGAG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	78
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	3 cut(s)	143, 367, 378
HinfI	GANTC	2 cut(s)	119, 212
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	2 cut(s)	98, 356
Hpy188III	TCNNGA	2 cut(s)	308, 410
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	143, 367, 378
Kzo9I	GATC	1 cut(s)	130
LpnPI	CCDG	9 cut(s)	49, 76, 148, 258, 285, 329, 354, 423, 430
Lsp1109I	GCAGC	1 cut(s)	342
MabI	ACCWGGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	68, 218, 288
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	6 cut(s)	104, 145, 399, 406, 414, 417
MslI	CAYNNNNRTG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	64, 273
MvaI	CCWGG	2 cut(s)	64, 273
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	3 cut(s)	143, 367, 378
NlaIV	GGNNCC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	2 cut(s)	322, 416
PkrI	GCNGC	2 cut(s)	332, 429
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	62, 271
PspGI	CCWGG	2 cut(s)	62, 271
PspN4I	GGNNCC	1 cut(s)	270
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	2 cut(s)	331, 428
Sau3AI	GATC	1 cut(s)	130
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	64, 273
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	85, 96, 109, 277, 335, 391
SexAI	ACCWGGT	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	4 cut(s)	60, 178, 425, 428
StyD4I	CCNGG	2 cut(s)	62, 271
TasI	AATT	1 cut(s)	41
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	164
Van91I	CCANNNNNTGG	2 cut(s)	322, 416
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.