Rorug03G0024400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009169
Physical Location & Seq
Reverse (-)
1942281 .. 1947854
5574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0024400.1

Sequence Viewer

Length: 1929 bp
ATGCTTCAGCAGAGCTCCCTCTTCGCCACCGCCGATTTCGGGTTCAGGCCGTGTTTGGTTCTCCCCAATAATACCAAAAACCCATTCTTCTCTTCCTCCATGGACCTCAAACCAACCCACACCAAGCTCCCAACTTTTACTCCTGCTTCTTCTTCTTCTCGCTCGCTAAACCAGGCCTTGGCTTGCCGGGCGTCACGTGACTCTCACGTGACCCCTCCTCCCAGTGGAGATGGTTTAGCTGCTGTTGTTCATGGATTGTCTGAGACCATTGTGGGTGTTCTTGGAGGAGGCCAGCTGGGTCGGATGCTGTGCCAAGCAGCTTCACAAATGGCTATTAAGGTGATGGTATTGGACCCACAGGAGAATTGTCCGGCGAGTAGACTTGCCTATCACCATATGGTTGGGAGCTTTGATGACAGTGCCACTGTCCAAGAATTCGCGAAAAGGTGTGGAGTGTTGACGGTGGAAATCGAACATGTGGATGTGGAGACATTGGAGAAGCTTGAGCAGCAAGGAGTAGACTGCCAGCCGAAAGCCTCTACAATCAGAATAATACAGGATAAATATCTTCAAAAGATTCACTTTTCGCGGCATGATATTCCACTTCCTGAATTTATGCAGATAGATGATCTGGAAGGTGCCAAGAGGGCAGGCAACCTCTTTGACTATCCTCTAATGATAAAGAGTAAAAGATTAGCTTATGATGGGCGTGGAAATGCTGTTGCTAAGAGTGAGCATGATCTTTCTTCTGCTGTAACAGCTCTTGGAGGGTTTGATCGCGGTTTGTATGTTGAGAAATGGGCCCCTTTTGTAAAGGAGCTGGCCGTCATTGTTGCTAGAGGAAGAGACAATTCTATCGTGTGCTATCCTGTTGTTGAAACTATACACAAGGAAAACATTTGTCACATTGTCAAAGCACCTGCTAACGTGCCATGGAAGATCCGAAAGTTGGCCACTGACATTGCATCTAGAGCTGTCAGTTCATTAGAAGGCGCTGGTGTGTTTGCGGTTGAGTTGTTCTTGACAGAGGATGATCAGATTTTGCTAAATGAAGTAGCTCCCAGACCTCACAATAGCGGTCATCACACAATAGAGTCTTGCTACACCTCACAGTATGAACAGCATTTGCGGGCTGTTGTTGGTCTTCCACTTGGTGATCCATCAATGAAAACTCCTGCTGCAATTATGTACAATTTACTTGGTGAAGATGAGGGGGAAGCTGGTTTCCACCTAGCTCATCAAGTGATTGGAAGAGCCTTGAGTATTCCAGGGGCTACTGTTCATTGGTATGATAAGCCAGATATGCGGAAGCAACGGAAAATGGGTCATATTACCATTGTTGGACCTTCCATGGGCAATGTGGAAAAAGCTCTGGATTCAATGCTAAATGACAAAATATCTGATAGTCAGTCCGCTGCCACACCGCGTGTTGGGATCATAATGGGTTCTGATTCAGATCTTCCTGTTATGAAGGATGCTGCAAAAGTTTTGATTATGTTTGAAGTGCCTCACGAGGTTAGGATAGTTTCTGCGCATCGAACTCCCGATTGGATGCATTCTTATGCCTTGTCTGCCCAGGAAAGGGGAATTCAGGTCATCATTGCTGGTGCTGGTGGCGCAGCTCACTTGCCAGGAATGGTAGCTGCATCCACTCCATTACCCGTTATTGGTGTCCCTGTGCGTGCCTCTACATTGGATGGAGTTGATTCGGTTCTATCTATATTGCAGATGCCAAGAGGGGTCCCGGTTGCAACAGTTGCTATAAACAATGCCACCAATGCTGGTTTGCTAGCAGCAAGGATGTTAGCTGTTTGTGATGCTGATCTACTTGCAAGAATCAGCCAGTATCAAGAAGACACAAAGAGCGAAGTCTTGGCAAAAGATGAGAAGCTACAGAAAGTTGGTTGGGAATCTTATTTGAATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:1990904
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-CCCH zf-U1

Protein Analysis

642

Amino Acids

69.51

Weight (kDa)

6.22

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RS_preATP-grasp-like PF22660 91 - 186 7.5e-32 Ribonucleotide synthetase preATP-grasp domain
ATP-grasp PF02222 194 - 372 2.6e-63 ATP-grasp domain
Dala_Dala_lig_C PF07478 216 - 356 2.2e-08 D-ala D-ala ligase C-terminus
PurK_C PF17769 394 - 456 4.7e-18 Phosphoribosylaminoimidazole carboxylase C-terminal domain
AIRC PF00731 476 - 621 2.7e-63 AIR carboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 928
Acc16I TGCGCA 1 cut(s) 1533
Acc36I ACCTGC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 178
AccI GTMKAC 2 cut(s) 379, 519
AccII CGCG 4 cut(s) 440, 589, 780, 1426
AciI CCGC 9 cut(s) 30, 589, 780, 1007, 1077, 1129, 1306, 1413, 1424
AclWI GGATC 3 cut(s) 934, 1151, 1442
AcoI YGGCCR 2 cut(s) 822, 951
AcsI RAATTY 3 cut(s) 434, 611, 1587
AcvI CACGTG 2 cut(s) 197, 208
AcyI GRCGYC 1 cut(s) 191
AdeI CACNNNGTG 2 cut(s) 1154, 1427
AfaI GTAC 1 cut(s) 1190
AfiI CCNNNNNNNGG 9 cut(s) 39, 178, 224, 949, 1352, 1430, 1581, 1582, 1667
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 5 cut(s) 572, 878, 1380, 1502, 1921
AjnI CCWGG 4 cut(s) 171, 1267, 1575, 1630
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 1531, 1563
Alw21I GWGCWC 1 cut(s) 17
Alw26I GTCTC 3 cut(s) 257, 482, 840
AlwI GGATC 3 cut(s) 934, 1151, 1442
AoxI GGCC 6 cut(s) 47, 174, 289, 801, 822, 951
ApaI GGGCCC 1 cut(s) 805
ApeKI GCWGC 9 cut(s) 239, 317, 508, 1178, 1415, 1478, 1619, 1643, 1793
ApoI RAATTY 3 cut(s) 434, 611, 1587
AspLEI GCGC 3 cut(s) 995, 1534, 1619
AspS9I GGNCC 6 cut(s) 103, 352, 801, 802, 1343, 1741
AsuC2I CCSGG 2 cut(s) 188, 1745
AsuHPI GGTGA 4 cut(s) 352, 383, 1166, 1214
AsuNHI GCTAGC 1 cut(s) 1789
AvaII GGWCC 4 cut(s) 103, 352, 1343, 1741
BaeGI GKGCMC 1 cut(s) 805
BalI TGGCCA 1 cut(s) 953
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 2 cut(s) 17, 805
BauI CACGAG 1 cut(s) 1511
BbrPI CACGTG 2 cut(s) 197, 208
BbsI GAAGAC 2 cut(s) 1136, 1860
Bbv12I GWGCWC 1 cut(s) 17
BbvI GCAGC 9 cut(s) 226, 329, 520, 1165, 1402, 1465, 1630, 1631, 1805
BccI CCATC 5 cut(s) 224, 337, 698, 1168, 1691
BceAI ACGGC 2 cut(s) 34, 809
BciT130I CCWGG 4 cut(s) 173, 1269, 1577, 1632
BclI TGATCA 1 cut(s) 1033
BcnI CCSGG 2 cut(s) 188, 1745
BcoDI GTCTC 3 cut(s) 257, 482, 840
BfaI CTAG 4 cut(s) 837, 969, 1232, 1790
BfmI CTRYAG 1 cut(s) 1892
BfoI RGCGCY 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 928
BglI GCCNNNNNGGC 1 cut(s) 647
BglII AGATCT 1 cut(s) 1456
Bme1390I CCNGG 6 cut(s) 173, 188, 1269, 1577, 1632, 1745
Bme18I GGWCC 4 cut(s) 103, 352, 1343, 1741
BmgT120I GGNCC 6 cut(s) 103, 352, 801, 802, 1343, 1741
BmiI GGNNCC 6 cut(s) 354, 640, 803, 804, 1742, 1743
BmrFI CCNGG 6 cut(s) 173, 188, 1269, 1577, 1632, 1745
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 8 cut(s) 294, 974, 1465, 1542, 1543, 1655, 1719, 1807
BmtI GCTAGC 1 cut(s) 1793
BmuI ACTGGG 1 cut(s) 216
BpiI GAAGAC 2 cut(s) 1136, 1860
BpuEI CTTGAG 2 cut(s) 524, 1279
BpuMI CCSGG 2 cut(s) 188, 1745
BsaAI YACGTR 2 cut(s) 197, 208
BsaBI GATNNNNATC 3 cut(s) 564, 1455, 1821
BsaHI GRCGYC 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 6 cut(s) 99, 177, 932, 1268, 1350, 1575
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 202, 232
Bsc4I CCNNNNNNNGG 9 cut(s) 39, 178, 224, 949, 1352, 1430, 1581, 1582, 1667
Bse1I ACTGG 2 cut(s) 222, 1843
Bse3DI GCAATG 3 cut(s) 960, 1363, 1599
Bse8I GATNNNNATC 3 cut(s) 564, 1455, 1821
BseBI CCWGG 4 cut(s) 173, 1269, 1577, 1632
BseDI CCNNGG 6 cut(s) 99, 177, 932, 1268, 1350, 1575
BseGI GGATG 8 cut(s) 309, 487, 1036, 1480, 1557, 1646, 1702, 1806
BseJI GATNNNNATC 3 cut(s) 564, 1455, 1821
BseLI CCNNNNNNNGG 9 cut(s) 39, 178, 224, 949, 1352, 1430, 1581, 1582, 1667
BseMI GCAATG 3 cut(s) 960, 1363, 1599
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 222, 1843
BseRI GAGGAG 2 cut(s) 207, 300
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 9 cut(s) 226, 329, 520, 1165, 1402, 1465, 1630, 1631, 1805
BseYI CCCAGC 1 cut(s) 295
Bsh1236I CGCG 4 cut(s) 440, 589, 780, 1426
BshFI GGCC 6 cut(s) 49, 176, 291, 803, 824, 953
BshNI GGYRCC 1 cut(s) 638
BsiHKAI GWGCWC 1 cut(s) 17
BsiSI CCGG 3 cut(s) 187, 371, 1745
BslFI GGGAC 2 cut(s) 1658, 1727
BslI CCNNNNNNNGG 9 cut(s) 39, 178, 224, 949, 1352, 1430, 1581, 1582, 1667
BsmAI GTCTC 3 cut(s) 257, 482, 840
BsmFI GGGAC 2 cut(s) 1658, 1727
BsmI GAATGC 1 cut(s) 1555
BsnI GGCC 6 cut(s) 49, 176, 291, 803, 824, 953
Bso31I GGTCTC 1 cut(s) 257
Bsp120I GGGCCC 1 cut(s) 801
Bsp1286I GDGCHC 2 cut(s) 17, 805
Bsp1407I TGTACA 1 cut(s) 1188
Bsp143I GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
Bsp19I CCATGG 3 cut(s) 99, 932, 1350
Bsp68I TCGCGA 1 cut(s) 440
BspACI CCGC 9 cut(s) 30, 589, 780, 1007, 1077, 1129, 1306, 1413, 1424
BspANI GGCC 6 cut(s) 49, 176, 291, 803, 824, 953
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 4 cut(s) 440, 589, 780, 1426
BspLI GGNNCC 6 cut(s) 354, 640, 803, 804, 1742, 1743
BspMI ACCTGC 1 cut(s) 928
BspOI GCTAGC 1 cut(s) 1793
BspPI GGATC 3 cut(s) 934, 1151, 1442
BspQI GCTCTTC 1 cut(s) 1246
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 3 cut(s) 960, 1363, 1599
BsrGI TGTACA 1 cut(s) 1188
BsrI ACTGG 2 cut(s) 222, 1843
BssECI CCNNGG 6 cut(s) 99, 177, 932, 1268, 1350, 1575
BssMI GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
BssNI GRCGYC 1 cut(s) 191
BssSI CACGAG 1 cut(s) 1511
BssT1I CCWWGG 4 cut(s) 99, 177, 932, 1350
Bst2BI CACGAG 1 cut(s) 1511
Bst2UI CCWGG 4 cut(s) 173, 1269, 1577, 1632
Bst4CI ACNGT 6 cut(s) 419, 427, 463, 1113, 1279, 1756
Bst6I CTCTTC 4 cut(s) 26, 97, 838, 1246
BstACI GRCGYC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 1757
BstAUI TGTACA 1 cut(s) 1188
BstBAI YACGTR 2 cut(s) 197, 208
BstC8I GCNNGC 9 cut(s) 164, 184, 293, 527, 652, 822, 1131, 1683, 1791
BstDEI CTNAG 2 cut(s) 261, 726
BstDSI CCRYGG 3 cut(s) 99, 932, 1350
BstF5I GGATG 8 cut(s) 309, 487, 1036, 1480, 1557, 1646, 1702, 1806
BstFNI CGCG 4 cut(s) 440, 589, 780, 1426
BstH2I RGCGCY 1 cut(s) 996
BstHHI GCGC 3 cut(s) 995, 1534, 1619
BstKTI GATC 9 cut(s) 631, 742, 778, 942, 1036, 1159, 1437, 1459, 1825
BstMAI GTCTC 3 cut(s) 257, 482, 840
BstMBI GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
BstNI CCWGG 4 cut(s) 173, 1269, 1577, 1632
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 6 cut(s) 171, 186, 1267, 1575, 1630, 1743
BstSFI CTRYAG 1 cut(s) 1892
BstSLI GKGCMC 1 cut(s) 805
BstUI CGCG 4 cut(s) 440, 589, 780, 1426
BstV1I GCAGC 9 cut(s) 226, 329, 520, 1165, 1402, 1465, 1630, 1631, 1805
BstV2I GAAGAC 2 cut(s) 1136, 1860
BstX2I RGATCY 2 cut(s) 939, 1456
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 2 cut(s) 939, 1456
BsuRI GGCC 6 cut(s) 49, 176, 291, 803, 824, 953
BtgI CCRYGG 3 cut(s) 99, 932, 1350
BtsCI GGATG 8 cut(s) 309, 487, 1036, 1480, 1557, 1646, 1702, 1806
BtsIMutI CAGTG 4 cut(s) 229, 423, 424, 954
BtuMI TCGCGA 1 cut(s) 440
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 9 cut(s) 164, 184, 293, 527, 652, 822, 1131, 1683, 1791
CfoI GCGC 3 cut(s) 995, 1534, 1619
Cfr13I GGNCC 6 cut(s) 103, 352, 801, 802, 1343, 1741
CseI GACGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 1189
CspCI CAANNNNNGTGG 2 cut(s) 943, 978
CviAII CATG 7 cut(s) 100, 251, 476, 593, 737, 933, 1351
CviQI GTAC 1 cut(s) 1189
DdeI CTNAG 2 cut(s) 261, 726
DpnI GATC 9 cut(s) 630, 741, 777, 941, 1035, 1158, 1436, 1458, 1824
DpnII GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
DraIII CACNNNGTG 2 cut(s) 1154, 1427
EaeI YGGCCR 2 cut(s) 822, 951
Eam1104I CTCTTC 4 cut(s) 26, 97, 838, 1246
EarI CTCTTC 4 cut(s) 26, 97, 838, 1246
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 4 cut(s) 99, 177, 932, 1350
Eco147I AGGCCT 1 cut(s) 176
Eco24I GRGCYC 2 cut(s) 17, 805
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 4 cut(s) 103, 352, 1343, 1741
Eco53kI GAGCTC 1 cut(s) 15
Eco72I CACGTG 2 cut(s) 197, 208
EcoICRI GAGCTC 1 cut(s) 15
EcoO109I RGGNCCY 2 cut(s) 802, 1741
EcoRI GAATTC 2 cut(s) 434, 1587
EcoRII CCWGG 4 cut(s) 171, 1267, 1575, 1630
EcoT14I CCWWGG 4 cut(s) 99, 177, 932, 1350
EcoT22I ATGCAT 1 cut(s) 1557
EcoT38I GRGCYC 2 cut(s) 17, 805
ErhI CCWWGG 4 cut(s) 99, 177, 932, 1350
FaeI CATG 7 cut(s) 103, 254, 479, 596, 740, 936, 1354
FalI AAGNNNNNCTT 4 cut(s) 566, 598, 682, 714
FaqI GGGAC 2 cut(s) 1658, 1727
FatI CATG 7 cut(s) 99, 250, 475, 592, 736, 932, 1350
FauI CCCGC 1 cut(s) 1122
FauNDI CATATG 1 cut(s) 396
FbaI TGATCA 1 cut(s) 1033
FblI GTMKAC 2 cut(s) 379, 519
FokI GGATG 8 cut(s) 316, 494, 1043, 1487, 1564, 1633, 1709, 1813
FriOI GRGCYC 2 cut(s) 17, 805
FspBI CTAG 4 cut(s) 837, 969, 1232, 1790
FspI TGCGCA 1 cut(s) 1533
GlaI GCGC 3 cut(s) 994, 1533, 1618
GsaI CCCAGC 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 996
HaeIII GGCC 6 cut(s) 49, 176, 291, 803, 824, 953
HapII CCGG 3 cut(s) 187, 371, 1745
HgaI GACGC 1 cut(s) 180
HhaI GCGC 3 cut(s) 995, 1534, 1619
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 7 cut(s) 103, 254, 479, 596, 740, 936, 1354
Hin6I GCGC 3 cut(s) 993, 1532, 1617
HinP1I GCGC 3 cut(s) 993, 1532, 1617
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 9 cut(s) 200, 577, 1094, 1376, 1451, 1706, 1836, 1910, 1921
HpaII CCGG 3 cut(s) 187, 371, 1745
HphI GGTGA 4 cut(s) 352, 383, 1166, 1214
Hpy166II GTNNAC 3 cut(s) 380, 459, 520
Hpy188I TCNGA 8 cut(s) 262, 303, 548, 944, 1038, 1402, 1450, 1456
Hpy188III TCNNGA 9 cut(s) 439, 608, 632, 969, 1021, 1373, 1511, 1544, 1850
Hpy8I GTNNAC 3 cut(s) 380, 459, 520
HpyAV CCTTC 4 cut(s) 629, 983, 1356, 1465
HpyCH4III ACNGT 6 cut(s) 419, 427, 463, 1113, 1279, 1756
HpyCH4IV ACGT 3 cut(s) 196, 207, 927
HpyCH4V TGCA 9 cut(s) 619, 965, 1181, 1481, 1555, 1646, 1726, 1751, 1832
HpyF3I CTNAG 2 cut(s) 261, 726
HpySE526I ACGT 3 cut(s) 196, 207, 927
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 7 cut(s) 103, 254, 479, 596, 740, 936, 1354
HspAI GCGC 3 cut(s) 993, 1532, 1617
KflI GGGWCCC 1 cut(s) 1741
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
LguI GCTCTTC 1 cut(s) 1246
LmnI GCTCC 5 cut(s) 20, 132, 405, 817, 1063
Lsp1109I GCAGC 9 cut(s) 226, 329, 520, 1165, 1402, 1465, 1630, 1631, 1805
LweI GCATC 8 cut(s) 294, 974, 1465, 1542, 1543, 1655, 1719, 1807
MaeI CTAG 4 cut(s) 837, 969, 1232, 1790
MaeII ACGT 3 cut(s) 196, 207, 927
MaeIII GTNAC 5 cut(s) 192, 197, 208, 754, 902
MalI GATC 9 cut(s) 630, 741, 777, 941, 1035, 1158, 1436, 1458, 1824
MboI GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
MflI RGATCY 2 cut(s) 939, 1456
MhlI GDGCHC 2 cut(s) 17, 805
MlsI TGGCCA 1 cut(s) 953
MluCI AATT 7 cut(s) 364, 434, 611, 850, 1182, 1192, 1587
MluNI TGGCCA 1 cut(s) 953
MlyI GAGTC 2 cut(s) 194, 1103
MmeI TCCRAC 2 cut(s) 281, 1321
Mox20I TGGCCA 1 cut(s) 953
Mph1103I ATGCAT 1 cut(s) 1557
MscI TGGCCA 1 cut(s) 953
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 3 cut(s) 480, 1287, 1560
Msp20I TGGCCA 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 295, 1415
MspI CCGG 3 cut(s) 187, 371, 1745
MspR9I CCNGG 6 cut(s) 173, 188, 1269, 1577, 1632, 1745
Mva1269I GAATGC 1 cut(s) 1555
MvaI CCWGG 4 cut(s) 173, 1269, 1577, 1632
MvnI CGCG 4 cut(s) 440, 589, 780, 1426
NciI CCSGG 2 cut(s) 188, 1745
NcoI CCATGG 3 cut(s) 99, 932, 1350
NdeI CATATG 1 cut(s) 396
NdeII GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
NheI GCTAGC 1 cut(s) 1789
NlaIII CATG 7 cut(s) 103, 254, 479, 596, 740, 936, 1354
NlaIV GGNNCC 6 cut(s) 354, 640, 803, 804, 1742, 1743
NmuCI GTSAC 4 cut(s) 192, 197, 208, 902
NruI TCGCGA 1 cut(s) 440
NsbI TGCGCA 1 cut(s) 1533
NsiI ATGCAT 1 cut(s) 1557
NspI RCATGY 1 cut(s) 479
PaqCI CACCTGC 1 cut(s) 928
PceI AGGCCT 1 cut(s) 176
PciI ACATGT 1 cut(s) 475
PciSI GCTCTTC 1 cut(s) 1246
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 1555
PfeI GAWTC 7 cut(s) 577, 1376, 1451, 1706, 1836, 1910, 1921
PflMI CCANNNNNTGG 1 cut(s) 178
PleI GAGTC 2 cut(s) 194, 1102
PmaCI CACGTG 2 cut(s) 197, 208
PmlI CACGTG 2 cut(s) 197, 208
PpsI GAGTC 2 cut(s) 194, 1102
Ppu21I YACGTR 2 cut(s) 197, 208
PpuMI RGGWCCY 1 cut(s) 1741
PscI ACATGT 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 1741
Psp6I CCWGG 4 cut(s) 171, 1267, 1575, 1630
PspCI CACGTG 2 cut(s) 197, 208
PspFI CCCAGC 1 cut(s) 295
PspGI CCWGG 4 cut(s) 171, 1267, 1575, 1630
PspN4I GGNNCC 6 cut(s) 354, 640, 803, 804, 1742, 1743
PspOMI GGGCCC 1 cut(s) 801
PspPI GGNCC 6 cut(s) 103, 352, 801, 802, 1343, 1741
PspPPI RGGWCCY 1 cut(s) 1741
PsuI RGATCY 2 cut(s) 939, 1456
PvuII CAGCTG 1 cut(s) 295
RruI TCGCGA 1 cut(s) 440
RsaI GTAC 1 cut(s) 1190
RsaNI GTAC 1 cut(s) 1189
RseI CAYNNNNRTG 3 cut(s) 480, 1287, 1560
SacI GAGCTC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 1246
SaqAI TTAA 1 cut(s) 336
Sau3AI GATC 9 cut(s) 628, 739, 775, 939, 1033, 1156, 1434, 1456, 1822
Sau96I GGNCC 6 cut(s) 103, 352, 801, 802, 1343, 1741
SchI GAGTC 2 cut(s) 194, 1103
ScrFI CCNGG 6 cut(s) 173, 188, 1269, 1577, 1632, 1745
SduI GDGCHC 2 cut(s) 17, 805
SfaNI GCATC 8 cut(s) 294, 974, 1465, 1542, 1543, 1655, 1719, 1807
SfcI CTRYAG 1 cut(s) 1892
SinI GGWCC 4 cut(s) 103, 352, 1343, 1741
SmiMI CAYNNNNRTG 3 cut(s) 480, 1287, 1560
SmlI CTYRAG 2 cut(s) 503, 1258
SmoI CTYRAG 2 cut(s) 503, 1258
Sse9I AATT 7 cut(s) 364, 434, 611, 850, 1182, 1192, 1587
SseBI AGGCCT 1 cut(s) 176
SsiI CCGC 9 cut(s) 30, 589, 780, 1007, 1077, 1129, 1306, 1413, 1424
SspMI CTAG 4 cut(s) 837, 969, 1232, 1790
SstI GAGCTC 1 cut(s) 17
StuI AGGCCT 1 cut(s) 176
StyD4I CCNGG 6 cut(s) 171, 186, 1267, 1575, 1630, 1743
StyI CCWWGG 4 cut(s) 99, 177, 932, 1350
TaaI ACNGT 6 cut(s) 419, 427, 463, 1113, 1279, 1756
TaiI ACGT 3 cut(s) 199, 210, 930
TaqI TCGA 2 cut(s) 471, 1537
TasI AATT 7 cut(s) 364, 434, 611, 850, 1182, 1192, 1587
TatI WGTACW 1 cut(s) 1188
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 7 cut(s) 577, 1376, 1451, 1706, 1836, 1910, 1921
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 4 cut(s) 229, 424, 430, 961
TseFI GTSAC 4 cut(s) 192, 197, 208, 902
TseI GCWGC 9 cut(s) 239, 317, 508, 1178, 1415, 1478, 1619, 1643, 1793
Tsp45I GTSAC 4 cut(s) 192, 197, 208, 902
TspDTI ATGAA 7 cut(s) 239, 972, 1065, 1131, 1181, 1271, 1484
TspGWI ACGGA 1 cut(s) 1330
TspRI CASTG 4 cut(s) 229, 424, 430, 961
Van91I CCANNNNNTGG 1 cut(s) 178
VpaK11BI GGWCC 4 cut(s) 103, 352, 1343, 1741
XapI RAATTY 3 cut(s) 434, 611, 1587
XbaI TCTAGA 1 cut(s) 968
XceI RCATGY 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 1357
XmiI GTMKAC 2 cut(s) 379, 519
XspI CTAG 4 cut(s) 837, 969, 1232, 1790
Zsp2I ATGCAT 1 cut(s) 1557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.