Prupe.6G357800_v2.0.a1

Activating signal cointegrator 1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017748
Physical Location & Seq
Reverse (-)
30307422 .. 30307939
518 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G357800.1

Sequence Viewer

Length: 360 bp
CGTCCTTTCTGCATTTTGCATCCTTCCTTGAGTTTAAAGCAAAGAGCTCTCACAGCAGATGCTGCACGTGCCCTGGACAAAGCAAAAATGATGCGCTTTGATGAGAAAAGTAGCAACTTCTATTGTACAGAAATTGGTCGAATTGCAAGCCACTTTGATATTCAATGTTCAAGTGTTGAAACATACAATGAAATGTTGAGACCCCACATGAATGAGACTGAGGTTATTGTTTTTGTGAACTATTTTCTGAGAGTGAATCCAGAAGCAGGACTCTTCTTCTTTGATTTTAGTTATCGCCCTGTGCCCTTGCACAGCAGTATATCGGTATTAGTGAGCAGAATTTTACAGCCCTCGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD Helicase_C Sec63

Protein Analysis

120

Amino Acids

13.77

Weight (kDa)

7.94

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 339
AcvI CACGTG 1 cut(s) 68
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 3 cut(s) 164, 171, 179
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 193, 209
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 1 cut(s) 96
BaeGI GKGCMC 2 cut(s) 73, 306
BanII GRGCYC 1 cut(s) 49
BbrPI CACGTG 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 193, 209
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 3 cut(s) 28, 49, 81
BpuEI CTTGAG 1 cut(s) 49
BsaAI YACGTR 1 cut(s) 68
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 210, 239
BseSI GKGCMC 2 cut(s) 73, 306
BseXI GCAGC 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 193, 209
Bso31I GGTCTC 1 cut(s) 193
Bsp1286I GDGCHC 3 cut(s) 49, 73, 306
Bsp1407I TGTACA 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 211, 240
BspTNI GGTCTC 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 219, 248
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 96
BstMAI GTCTC 2 cut(s) 193, 209
BstMWI GCNNNNNNNGC 3 cut(s) 53, 62, 68
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSLI GKGCMC 2 cut(s) 73, 306
BstV1I GCAGC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 148
CaiI CAGNNNCTG 1 cut(s) 62
CfoI GCGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 126
CviAII CATG 1 cut(s) 208
CviJI RGCY 3 cut(s) 47, 150, 349
CviKI_1 RGCY 3 cut(s) 47, 150, 349
CviQI GTAC 1 cut(s) 126
DdeI CTNAG 2 cut(s) 219, 248
DraI TTTAAA 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Ecl136II GAGCTC 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 47
Eco72I CACGTG 1 cut(s) 68
EcoICRI GAGCTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 49
FaeI CATG 1 cut(s) 211
FaiI YATR 3 cut(s) 184, 209, 320
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 63
HhaI GCGC 1 cut(s) 96
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HinfI GANTC 2 cut(s) 256, 270
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 249
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 12, 19, 65, 146, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 62, 68
HpyF3I CTNAG 2 cut(s) 219, 248
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 1 cut(s) 94
LpnPI CCDG 5 cut(s) 59, 86, 252, 273, 312
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 3 cut(s) 28, 49, 81
MaeII ACGT 1 cut(s) 67
MboII GAAGA 2 cut(s) 265, 268
MhlI GDGCHC 3 cut(s) 49, 73, 306
MluCI AATT 3 cut(s) 132, 141, 339
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 1 cut(s) 214
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 53, 62, 68
NlaIII CATG 1 cut(s) 211
PfeI GAWTC 1 cut(s) 256
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 264
PmaCI CACGTG 1 cut(s) 68
PmlI CACGTG 1 cut(s) 68
PpsI GAGTC 1 cut(s) 264
Ppu21I YACGTR 1 cut(s) 68
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 72
PspCI CACGTG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 63
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 3 cut(s) 49, 73, 306
SetI ASST 3 cut(s) 49, 70, 225
SfaNI GCATC 3 cut(s) 28, 49, 81
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 132, 141, 339
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 139
TasI AATT 3 cut(s) 132, 141, 339
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 204, 224
XapI RAATTY 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.