Transcription elongation factor
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.3G238700_v2.0.a1 Prupe.6G357800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr1g0335081 RchiOBHm_Chr7g0224331 |
| rosa_laevigata | RLG00000022526 |
| rosa_multiflora | Rmu_sc0040399.1_g000001 |
| rosa_rugosa | Rorug05G0380500 Rorug06G0022000 Rorug07G0325000 |
| rosa_samantha | Rh3CG362000 Rh3DG364900 Rh7DG366200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 446 |
| AccII | CGCG | 1 cut(s) | 90 |
| AciI | CCGC | 5 cut(s) | 11, 360, 549, 1485, 1542 |
| AclWI | GGATC | 2 cut(s) | 951, 1045 |
| AcoI | YGGCCR | 2 cut(s) | 157, 1299 |
| AcsI | RAATTY | 3 cut(s) | 245, 923, 1047 |
| AfaI | GTAC | 6 cut(s) | 453, 631, 1059, 1146, 1314, 1592 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 35 |
| AflII | CTTAAG | 1 cut(s) | 1508 |
| AgsI | TTSAA | 6 cut(s) | 292, 378, 466, 659, 849, 929 |
| AjnI | CCWGG | 2 cut(s) | 1414, 1605 |
| AluBI | AGCT | 7 cut(s) | 32, 554, 683, 934, 1066, 1096, 1151 |
| AluI | AGCT | 7 cut(s) | 32, 554, 683, 934, 1066, 1096, 1151 |
| Alw21I | GWGCWC | 3 cut(s) | 738, 936, 1401 |
| Alw26I | GTCTC | 3 cut(s) | 959, 1229, 1486 |
| Alw44I | GTGCAC | 1 cut(s) | 734 |
| AlwI | GGATC | 2 cut(s) | 951, 1045 |
| AoxI | GGCC | 5 cut(s) | 157, 284, 411, 1299, 1629 |
| ApaLI | GTGCAC | 1 cut(s) | 734 |
| ApeKI | GCWGC | 4 cut(s) | 176, 551, 1139, 1151 |
| ApoI | RAATTY | 3 cut(s) | 245, 923, 1047 |
| AspS9I | GGNCC | 3 cut(s) | 26, 1418, 1603 |
| AsuHPI | GGTGA | 4 cut(s) | 182, 320, 514, 722 |
| AvaII | GGWCC | 3 cut(s) | 26, 1418, 1603 |
| BaeGI | GKGCMC | 1 cut(s) | 738 |
| BalI | TGGCCA | 1 cut(s) | 1301 |
| BanII | GRGCYC | 1 cut(s) | 936 |
| Bbv12I | GWGCWC | 3 cut(s) | 738, 936, 1401 |
| BbvCI | CCTCAGC | 1 cut(s) | 363 |
| BbvI | GCAGC | 4 cut(s) | 163, 563, 1126, 1138 |
| BccI | CCATC | 2 cut(s) | 139, 203 |
| BceAI | ACGGC | 4 cut(s) | 56, 144, 600, 1127 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 28, 62, 68, 102, 1442, 1476 |
| BciT130I | CCWGG | 2 cut(s) | 1416, 1607 |
| BclI | TGATCA | 2 cut(s) | 109, 327 |
| BcoDI | GTCTC | 3 cut(s) | 959, 1229, 1486 |
| BfaI | CTAG | 1 cut(s) | 1044 |
| BfmI | CTRYAG | 1 cut(s) | 1152 |
| BfrI | CTTAAG | 1 cut(s) | 1508 |
| BglII | AGATCT | 1 cut(s) | 1075 |
| BisI | GCNGC | 8 cut(s) | 12, 177, 360, 549, 552, 1140, 1152, 1543 |
| BlsI | GCNGC | 8 cut(s) | 13, 178, 361, 550, 553, 1141, 1153, 1544 |
| Bme1390I | CCNGG | 2 cut(s) | 1416, 1607 |
| Bme18I | GGWCC | 3 cut(s) | 26, 1418, 1603 |
| BmgT120I | GGNCC | 3 cut(s) | 26, 1418, 1603 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmrFI | CCNGG | 2 cut(s) | 1416, 1607 |
| BpmI | CTGGAG | 1 cut(s) | 711 |
| Bpu10I | CCTNAGC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 1 cut(s) | 1253 |
| Bsa29I | ATCGAT | 2 cut(s) | 42, 1458 |
| BsaBI | GATNNNNATC | 2 cut(s) | 326, 699 |
| BsaJI | CCNNGG | 2 cut(s) | 1053, 1219 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 35 |
| Bse1I | ACTGG | 1 cut(s) | 773 |
| Bse3DI | GCAATG | 1 cut(s) | 790 |
| Bse8I | GATNNNNATC | 2 cut(s) | 326, 699 |
| BseBI | CCWGG | 2 cut(s) | 1416, 1607 |
| BseCI | ATCGAT | 2 cut(s) | 42, 1458 |
| BseDI | CCNNGG | 2 cut(s) | 1053, 1219 |
| BseGI | GGATG | 1 cut(s) | 994 |
| BseJI | GATNNNNATC | 2 cut(s) | 326, 699 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 35 |
| BseMI | GCAATG | 1 cut(s) | 790 |
| BseMII | CTCAG | 3 cut(s) | 354, 488, 791 |
| BseNI | ACTGG | 1 cut(s) | 773 |
| BseRI | GAGGAG | 1 cut(s) | 380 |
| BseSI | GKGCMC | 1 cut(s) | 738 |
| BseXI | GCAGC | 4 cut(s) | 163, 563, 1126, 1138 |
| BseYI | CCCAGC | 1 cut(s) | 497 |
| BsgI | GTGCAG | 1 cut(s) | 1202 |
| Bsh1236I | CGCG | 1 cut(s) | 90 |
| Bsh1285I | CGRYCG | 1 cut(s) | 88 |
| BshFI | GGCC | 5 cut(s) | 159, 286, 413, 1301, 1631 |
| BshVI | ATCGAT | 2 cut(s) | 42, 1458 |
| BsiEI | CGRYCG | 1 cut(s) | 88 |
| BsiHKAI | GWGCWC | 3 cut(s) | 738, 936, 1401 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 35 |
| BsmAI | GTCTC | 3 cut(s) | 959, 1229, 1486 |
| BsnI | GGCC | 5 cut(s) | 159, 286, 413, 1301, 1631 |
| Bsp1286I | GDGCHC | 3 cut(s) | 738, 936, 1401 |
| BspACI | CCGC | 5 cut(s) | 11, 360, 549, 1485, 1542 |
| BspANI | GGCC | 5 cut(s) | 159, 286, 413, 1301, 1631 |
| BspCNI | CTCAG | 3 cut(s) | 355, 487, 792 |
| BspDI | ATCGAT | 2 cut(s) | 42, 1458 |
| BspFNI | CGCG | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspMAI | CTGCAG | 1 cut(s) | 1156 |
| BspPI | GGATC | 2 cut(s) | 951, 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 924 |
| BspTI | CTTAAG | 1 cut(s) | 1508 |
| BsrDI | GCAATG | 1 cut(s) | 790 |
| BsrI | ACTGG | 1 cut(s) | 773 |
| BssECI | CCNNGG | 2 cut(s) | 1053, 1219 |
| BssT1I | CCWWGG | 2 cut(s) | 1053, 1219 |
| Bst2UI | CCWGG | 2 cut(s) | 1416, 1607 |
| Bst4CI | ACNGT | 3 cut(s) | 214, 451, 970 |
| Bst6I | CTCTTC | 1 cut(s) | 924 |
| BstAFI | CTTAAG | 1 cut(s) | 1508 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 557, 1136, 1396 |
| BstC8I | GCNNGC | 1 cut(s) | 511 |
| BstDEI | CTNAG | 3 cut(s) | 363, 474, 800 |
| BstF5I | GGATG | 1 cut(s) | 994 |
| BstFNI | CGCG | 1 cut(s) | 90 |
| BstMAI | GTCTC | 3 cut(s) | 959, 1229, 1486 |
| BstMCI | CGRYCG | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 11, 557, 1136, 1148, 1396, 1637 |
| BstNI | CCWGG | 2 cut(s) | 1416, 1607 |
| BstNSI | RCATGY | 2 cut(s) | 261, 397 |
| BstSCI | CCNGG | 2 cut(s) | 1414, 1605 |
| BstSFI | CTRYAG | 1 cut(s) | 1152 |
| BstSLI | GKGCMC | 1 cut(s) | 738 |
| BstUI | CGCG | 1 cut(s) | 90 |
| BstV1I | GCAGC | 4 cut(s) | 163, 563, 1126, 1138 |
| BstX2I | RGATCY | 3 cut(s) | 943, 1037, 1075 |
| BstYI | RGATCY | 3 cut(s) | 943, 1037, 1075 |
| Bsu15I | ATCGAT | 2 cut(s) | 42, 1458 |
| BsuRI | GGCC | 5 cut(s) | 159, 286, 413, 1301, 1631 |
| BsuTUI | ATCGAT | 2 cut(s) | 42, 1458 |
| BtsCI | GGATG | 1 cut(s) | 994 |
| BtsIMutI | CAGTG | 2 cut(s) | 766, 797 |
| Cac8I | GCNNGC | 1 cut(s) | 511 |
| Cfr13I | GGNCC | 3 cut(s) | 26, 1418, 1603 |
| ClaI | ATCGAT | 2 cut(s) | 42, 1458 |
| Csp6I | GTAC | 6 cut(s) | 452, 630, 1058, 1145, 1313, 1591 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 280, 315 |
| CviAII | CATG | 4 cut(s) | 258, 394, 514, 940 |
| CviQI | GTAC | 6 cut(s) | 452, 630, 1058, 1145, 1313, 1591 |
| DdeI | CTNAG | 3 cut(s) | 363, 474, 800 |
| EaeI | YGGCCR | 2 cut(s) | 157, 1299 |
| Eam1104I | CTCTTC | 1 cut(s) | 924 |
| EarI | CTCTTC | 1 cut(s) | 924 |
| Ecl136II | GAGCTC | 1 cut(s) | 934 |
| Eco130I | CCWWGG | 2 cut(s) | 1053, 1219 |
| Eco147I | AGGCCT | 1 cut(s) | 413 |
| Eco24I | GRGCYC | 1 cut(s) | 936 |
| Eco32I | GATATC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 3 cut(s) | 26, 1418, 1603 |
| Eco53kI | GAGCTC | 1 cut(s) | 934 |
| EcoICRI | GAGCTC | 1 cut(s) | 934 |
| EcoRI | GAATTC | 1 cut(s) | 1047 |
| EcoRII | CCWGG | 2 cut(s) | 1414, 1605 |
| EcoRV | GATATC | 1 cut(s) | 372 |
| EcoT14I | CCWWGG | 2 cut(s) | 1053, 1219 |
| EcoT22I | ATGCAT | 1 cut(s) | 259 |
| EcoT38I | GRGCYC | 1 cut(s) | 936 |
| ErhI | CCWWGG | 2 cut(s) | 1053, 1219 |
| FaeI | CATG | 4 cut(s) | 261, 397, 517, 943 |
| FatI | CATG | 4 cut(s) | 257, 393, 513, 939 |
| FauNDI | CATATG | 2 cut(s) | 562, 1132 |
| FbaI | TGATCA | 2 cut(s) | 109, 327 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 177, 360, 549, 552, 1140, 1152, 1543 |
| FokI | GGATG | 1 cut(s) | 1001 |
| FriOI | GRGCYC | 1 cut(s) | 936 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 177, 360, 549, 552, 1140, 1152, 1543 |
| FspBI | CTAG | 1 cut(s) | 1044 |
| GluI | GCNGC | 8 cut(s) | 12, 177, 360, 549, 552, 1140, 1152, 1543 |
| GsaI | CCCAGC | 1 cut(s) | 501 |
| GsuI | CTGGAG | 1 cut(s) | 711 |
| HaeIII | GGCC | 5 cut(s) | 159, 286, 413, 1301, 1631 |
| Hin1II | CATG | 4 cut(s) | 261, 397, 517, 943 |
| HinfI | GANTC | 5 cut(s) | 295, 470, 838, 875, 1407 |
| HphI | GGTGA | 4 cut(s) | 182, 320, 514, 722 |
| Hpy166II | GTNNAC | 1 cut(s) | 736 |
| Hpy188I | TCNGA | 1 cut(s) | 50 |
| Hpy188III | TCNNGA | 5 cut(s) | 292, 569, 757, 1115, 1453 |
| Hpy8I | GTNNAC | 1 cut(s) | 736 |
| HpyAV | CCTTC | 5 cut(s) | 656, 766, 1397, 1570, 1621 |
| HpyCH4III | ACNGT | 3 cut(s) | 214, 451, 970 |
| HpyCH4IV | ACGT | 1 cut(s) | 1523 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 11, 557, 1136, 1148, 1396, 1637 |
| HpyF3I | CTNAG | 3 cut(s) | 363, 474, 800 |
| HpySE526I | ACGT | 1 cut(s) | 1523 |
| Hsp92II | CATG | 4 cut(s) | 261, 397, 517, 943 |
| Ksp22I | TGATCA | 2 cut(s) | 109, 327 |
| LguI | GCTCTTC | 1 cut(s) | 924 |
| LmnI | GCTCC | 1 cut(s) | 1093 |
| Lsp1109I | GCAGC | 4 cut(s) | 163, 563, 1126, 1138 |
| MaeI | CTAG | 1 cut(s) | 1044 |
| MaeII | ACGT | 1 cut(s) | 1523 |
| MaeIII | GTNAC | 2 cut(s) | 308, 1204 |
| MboII | GAAGA | 9 cut(s) | 366, 671, 725, 772, 816, 837, 941, 1367, 1579 |
| MflI | RGATCY | 3 cut(s) | 943, 1037, 1075 |
| MhlI | GDGCHC | 3 cut(s) | 738, 936, 1401 |
| MlsI | TGGCCA | 1 cut(s) | 1301 |
| MluNI | TGGCCA | 1 cut(s) | 1301 |
| MlyI | GAGTC | 2 cut(s) | 464, 832 |
| Mox20I | TGGCCA | 1 cut(s) | 1301 |
| Mph1103I | ATGCAT | 1 cut(s) | 259 |
| MscI | TGGCCA | 1 cut(s) | 1301 |
| MseI | TTAA | 6 cut(s) | 264, 534, 651, 1083, 1293, 1509 |
| MslI | CAYNNNNRTG | 2 cut(s) | 518, 705 |
| Msp20I | TGGCCA | 1 cut(s) | 1301 |
| MspA1I | CMGCKG | 2 cut(s) | 362, 1487 |
| MspCI | CTTAAG | 1 cut(s) | 1508 |
| MspR9I | CCNGG | 2 cut(s) | 1416, 1607 |
| MvaI | CCWGG | 2 cut(s) | 1416, 1607 |
| MvnI | CGCG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 11, 557, 1136, 1148, 1396, 1637 |
| NdeI | CATATG | 2 cut(s) | 562, 1132 |
| NlaIII | CATG | 4 cut(s) | 261, 397, 517, 943 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| NmeAIII | GCCGAG | 1 cut(s) | 1393 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NsiI | ATGCAT | 1 cut(s) | 259 |
| NspI | RCATGY | 2 cut(s) | 261, 397 |
| PceI | AGGCCT | 1 cut(s) | 413 |
| PciSI | GCTCTTC | 1 cut(s) | 924 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 131, 891 |
| PfeI | GAWTC | 3 cut(s) | 295, 875, 1407 |
| PkrI | GCNGC | 8 cut(s) | 13, 178, 361, 550, 553, 1141, 1153, 1544 |
| Ple19I | CGATCG | 1 cut(s) | 88 |
| PleI | GAGTC | 2 cut(s) | 464, 832 |
| PpsI | GAGTC | 2 cut(s) | 464, 832 |
| PsiI | TTATAA | 1 cut(s) | 446 |
| Psp124BI | GAGCTC | 1 cut(s) | 936 |
| Psp6I | CCWGG | 2 cut(s) | 1414, 1605 |
| PspFI | CCCAGC | 1 cut(s) | 497 |
| PspGI | CCWGG | 2 cut(s) | 1414, 1605 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| PspPI | GGNCC | 3 cut(s) | 26, 1418, 1603 |
| PstI | CTGCAG | 1 cut(s) | 1156 |
| PsuI | RGATCY | 3 cut(s) | 943, 1037, 1075 |
| PvuI | CGATCG | 1 cut(s) | 88 |
| RsaI | GTAC | 6 cut(s) | 453, 631, 1059, 1146, 1314, 1592 |
| RsaNI | GTAC | 6 cut(s) | 452, 630, 1058, 1145, 1313, 1591 |
| RseI | CAYNNNNRTG | 2 cut(s) | 518, 705 |
| SacI | GAGCTC | 1 cut(s) | 936 |
| SapI | GCTCTTC | 1 cut(s) | 924 |
| SaqAI | TTAA | 6 cut(s) | 264, 534, 651, 1083, 1293, 1509 |
| SatI | GCNGC | 8 cut(s) | 12, 177, 360, 549, 552, 1140, 1152, 1543 |
| Sau96I | GGNCC | 3 cut(s) | 26, 1418, 1603 |
| SchI | GAGTC | 2 cut(s) | 464, 832 |
| ScrFI | CCNGG | 2 cut(s) | 1416, 1607 |
| SduI | GDGCHC | 3 cut(s) | 738, 936, 1401 |
| SfcI | CTRYAG | 1 cut(s) | 1152 |
| SinI | GGWCC | 3 cut(s) | 26, 1418, 1603 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 518, 705 |
| SmlI | CTYRAG | 2 cut(s) | 1232, 1508 |
| SmoI | CTYRAG | 2 cut(s) | 1232, 1508 |
| SseBI | AGGCCT | 1 cut(s) | 413 |
| SsiI | CCGC | 5 cut(s) | 11, 360, 549, 1485, 1542 |
| SspI | AATATT | 1 cut(s) | 154 |
| SspMI | CTAG | 1 cut(s) | 1044 |
| SstI | GAGCTC | 1 cut(s) | 936 |
| StuI | AGGCCT | 1 cut(s) | 413 |
| StyD4I | CCNGG | 2 cut(s) | 1414, 1605 |
| StyI | CCWWGG | 2 cut(s) | 1053, 1219 |
| TaaI | ACNGT | 3 cut(s) | 214, 451, 970 |
| TaiI | ACGT | 1 cut(s) | 1526 |
| TaqI | TCGA | 8 cut(s) | 42, 615, 756, 885, 894, 1401, 1452, 1458 |
| TatI | WGTACW | 1 cut(s) | 1590 |
| TauI | GCSGC | 4 cut(s) | 14, 362, 551, 1545 |
| TfiI | GAWTC | 3 cut(s) | 295, 875, 1407 |
| Tru1I | TTAA | 6 cut(s) | 264, 534, 651, 1083, 1293, 1509 |
| Tru9I | TTAA | 6 cut(s) | 264, 534, 651, 1083, 1293, 1509 |
| TscAI | CASTG | 2 cut(s) | 773, 804 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| TseI | GCWGC | 4 cut(s) | 176, 551, 1139, 1151 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 7 cut(s) | 290, 357, 449, 530, 1134, 1506, 1589 |
| TspRI | CASTG | 2 cut(s) | 773, 804 |
| Vha464I | CTTAAG | 1 cut(s) | 1508 |
| VneI | GTGCAC | 1 cut(s) | 734 |
| VpaK11BI | GGWCC | 3 cut(s) | 26, 1418, 1603 |
| XapI | RAATTY | 3 cut(s) | 245, 923, 1047 |
| XceI | RCATGY | 2 cut(s) | 261, 397 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1639 |
| XspI | CTAG | 1 cut(s) | 1044 |
| Zsp2I | ATGCAT | 1 cut(s) | 259 |