Rorug06G0022000

Transcription elongation factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
2783151 .. 2785235
2085 bp
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UTR
Exon/CDS
Intron
Rorug06G0022000.1

Sequence Viewer

Length: 1659 bp
ATGGCATTAGCGGCGAAAGGCGAGGGTCCAGCTATCGGCATCGATCTCGGAACAACTTACTCTTGCGTTGCCGTTTGGCAACACGATCGCGTTGAGATCATAGCCAATGATCAGGGCAACAGAACGACACCATCGTATGTTGCTTTTACCAATATTGGCCGTTTGATCGGTGATGCTGCCAAGAACCAAGCCACCATCAACCCTACCAATACTGTTTTTGATGCAAAGCGATTGATTGGCAGGAAATTTAGTGATGCATGTGTTAAGAGTGATATGAAATTATGGCCTTTCAAGATTCGTGGGGTGGGTGACAAGCCTATGATTGTGATCAACTACAAGAATGAAAAGAAACAATTTGCCGCTGAGGAGATATCTTCAATGGTTCTCAATAACATGCGTGAAATTGCAGAGGCCTATCTTGGACTTACAATAATGAATGTTGTTATAACTGTACCAGCATACTTCAATGACTCTCAGCGACAGGCTACAAAAGATGCTGGGGTGATTGCAGGCATGAATGTGATGCGTATTCTTAATGAGCCAACAGCCGCAGCTATTGCATATGGTCTTGACAAAAAGGCTACGGCTATTGGTGGTAAAAATGTTCTCATTTTCGATCTTGGTGGTGGTACTTTTGATGTTTCCCTTCTTAAAATTGAAGATGAGATTTTTGAGGTAAAAGCTACTGCTGGAGATACACATCTTGGTGGTGAAGATTTTGACAATAGAATGGTGCACCATTTTGTGCAAGAGTTCGAGAAGAAACACTGGAAGGACATTAGCAATGACCCCAAAGCACTGAGAAGATTGAGAACATCTTGTGAGAGAGCGAAAAGGACTCTTTCTTCAACTGCTGAAACCACCATTGAGATTGATTCTTTATTCGAGGGTATCGACTTCCACTCTAAAATAACAAGAGCAAAATTTGAAGAGCTCAACATGGATCTCTTTAGAAAATGTATGGAGACTGTGGAAAATTGTGTGAGGGATGCTAAAATTGATAGGGAAATTGTTGATGATATTGTTCTTGTTGGTGGATCTACTAGAATTCCCAAGGTACAACAGCTATTGCAAGATCTCTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGATGAAGCAGTTGCATATGGTGCTGCCGTACAAGCTGCAGTTTTGCGTGGTGGAGTTGAGAAAGTGCAGGACTTACTCTTGTTAGATGTAACTCCACTTTCCCTTGGTCGTATGCTTGAGACAGGAGAGTTTGATGTTTTTATCCCAAGAAACACTACCATTCCCACCAAAAAAATTAAAATGGCCACAACTATCGTACAAAACCAAATCGGTTTGATAGTTGATGTGTATGAGGGCGAAGAAACAAGAGCCGAGAAAAACAAATCGTTGGGGCAATTTGTGCTCGAAGGAATCCCTCCTGGTCCAAAAGGAAAACCTCAAATCACAATTTGCTTCGAGATCGATGCCAATGGAGTTTTGATTGTCTCCGCTGATGAAAAACGACTGCATCTTAAGAAAAAGATTACGTTCTCCAATTATAGAGGCGGCTTATCTAAAGTGGAAATTGAGAAGATGATGAAGGAAGCAGAGAAGTACAAGTTAGAGGACCAGGAATATAACGAGAAAGTGAAGGCCAAGTCTGCATTGGCAGACTGCATATAA

Protein Analysis

552

Amino Acids

61.19

Weight (kDa)

6.28

Isoelectric Point (pI)

25.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 11 - 549 7.1e-219 Hsp70 protein
MreB_Mbl PF06723 127 - 381 5.7e-14 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AccII CGCG 1 cut(s) 90
AciI CCGC 5 cut(s) 11, 360, 549, 1485, 1542
AclWI GGATC 2 cut(s) 951, 1045
AcoI YGGCCR 2 cut(s) 157, 1299
AcsI RAATTY 3 cut(s) 245, 923, 1047
AfaI GTAC 6 cut(s) 453, 631, 1059, 1146, 1314, 1592
AfiI CCNNNNNNNGG 1 cut(s) 35
AflII CTTAAG 1 cut(s) 1508
AgsI TTSAA 6 cut(s) 292, 378, 466, 659, 849, 929
AjnI CCWGG 2 cut(s) 1414, 1605
AluBI AGCT 7 cut(s) 32, 554, 683, 934, 1066, 1096, 1151
AluI AGCT 7 cut(s) 32, 554, 683, 934, 1066, 1096, 1151
Alw21I GWGCWC 3 cut(s) 738, 936, 1401
Alw26I GTCTC 3 cut(s) 959, 1229, 1486
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 2 cut(s) 951, 1045
AoxI GGCC 5 cut(s) 157, 284, 411, 1299, 1629
ApaLI GTGCAC 1 cut(s) 734
ApeKI GCWGC 4 cut(s) 176, 551, 1139, 1151
ApoI RAATTY 3 cut(s) 245, 923, 1047
AspS9I GGNCC 3 cut(s) 26, 1418, 1603
AsuHPI GGTGA 4 cut(s) 182, 320, 514, 722
AvaII GGWCC 3 cut(s) 26, 1418, 1603
BaeGI GKGCMC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 1301
BanII GRGCYC 1 cut(s) 936
Bbv12I GWGCWC 3 cut(s) 738, 936, 1401
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 4 cut(s) 163, 563, 1126, 1138
BccI CCATC 2 cut(s) 139, 203
BceAI ACGGC 4 cut(s) 56, 144, 600, 1127
BcgI CGANNNNNNTGC 6 cut(s) 28, 62, 68, 102, 1442, 1476
BciT130I CCWGG 2 cut(s) 1416, 1607
BclI TGATCA 2 cut(s) 109, 327
BcoDI GTCTC 3 cut(s) 959, 1229, 1486
BfaI CTAG 1 cut(s) 1044
BfmI CTRYAG 1 cut(s) 1152
BfrI CTTAAG 1 cut(s) 1508
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 8 cut(s) 12, 177, 360, 549, 552, 1140, 1152, 1543
BlsI GCNGC 8 cut(s) 13, 178, 361, 550, 553, 1141, 1153, 1544
Bme1390I CCNGG 2 cut(s) 1416, 1607
Bme18I GGWCC 3 cut(s) 26, 1418, 1603
BmgT120I GGNCC 3 cut(s) 26, 1418, 1603
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 1416, 1607
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 1253
Bsa29I ATCGAT 2 cut(s) 42, 1458
BsaBI GATNNNNATC 2 cut(s) 326, 699
BsaJI CCNNGG 2 cut(s) 1053, 1219
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 773
Bse3DI GCAATG 1 cut(s) 790
Bse8I GATNNNNATC 2 cut(s) 326, 699
BseBI CCWGG 2 cut(s) 1416, 1607
BseCI ATCGAT 2 cut(s) 42, 1458
BseDI CCNNGG 2 cut(s) 1053, 1219
BseGI GGATG 1 cut(s) 994
BseJI GATNNNNATC 2 cut(s) 326, 699
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 790
BseMII CTCAG 3 cut(s) 354, 488, 791
BseNI ACTGG 1 cut(s) 773
BseRI GAGGAG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 738
BseXI GCAGC 4 cut(s) 163, 563, 1126, 1138
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 1202
Bsh1236I CGCG 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 5 cut(s) 159, 286, 413, 1301, 1631
BshVI ATCGAT 2 cut(s) 42, 1458
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 3 cut(s) 738, 936, 1401
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 3 cut(s) 959, 1229, 1486
BsnI GGCC 5 cut(s) 159, 286, 413, 1301, 1631
Bsp1286I GDGCHC 3 cut(s) 738, 936, 1401
BspACI CCGC 5 cut(s) 11, 360, 549, 1485, 1542
BspANI GGCC 5 cut(s) 159, 286, 413, 1301, 1631
BspCNI CTCAG 3 cut(s) 355, 487, 792
BspDI ATCGAT 2 cut(s) 42, 1458
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 1156
BspPI GGATC 2 cut(s) 951, 1045
BspQI GCTCTTC 1 cut(s) 924
BspTI CTTAAG 1 cut(s) 1508
BsrDI GCAATG 1 cut(s) 790
BsrI ACTGG 1 cut(s) 773
BssECI CCNNGG 2 cut(s) 1053, 1219
BssT1I CCWWGG 2 cut(s) 1053, 1219
Bst2UI CCWGG 2 cut(s) 1416, 1607
Bst4CI ACNGT 3 cut(s) 214, 451, 970
Bst6I CTCTTC 1 cut(s) 924
BstAFI CTTAAG 1 cut(s) 1508
BstAPI GCANNNNNTGC 3 cut(s) 557, 1136, 1396
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 3 cut(s) 363, 474, 800
BstF5I GGATG 1 cut(s) 994
BstFNI CGCG 1 cut(s) 90
BstMAI GTCTC 3 cut(s) 959, 1229, 1486
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 11, 557, 1136, 1148, 1396, 1637
BstNI CCWGG 2 cut(s) 1416, 1607
BstNSI RCATGY 2 cut(s) 261, 397
BstSCI CCNGG 2 cut(s) 1414, 1605
BstSFI CTRYAG 1 cut(s) 1152
BstSLI GKGCMC 1 cut(s) 738
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 163, 563, 1126, 1138
BstX2I RGATCY 3 cut(s) 943, 1037, 1075
BstYI RGATCY 3 cut(s) 943, 1037, 1075
Bsu15I ATCGAT 2 cut(s) 42, 1458
BsuRI GGCC 5 cut(s) 159, 286, 413, 1301, 1631
BsuTUI ATCGAT 2 cut(s) 42, 1458
BtsCI GGATG 1 cut(s) 994
BtsIMutI CAGTG 2 cut(s) 766, 797
Cac8I GCNNGC 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 26, 1418, 1603
ClaI ATCGAT 2 cut(s) 42, 1458
Csp6I GTAC 6 cut(s) 452, 630, 1058, 1145, 1313, 1591
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 4 cut(s) 258, 394, 514, 940
CviQI GTAC 6 cut(s) 452, 630, 1058, 1145, 1313, 1591
DdeI CTNAG 3 cut(s) 363, 474, 800
EaeI YGGCCR 2 cut(s) 157, 1299
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Ecl136II GAGCTC 1 cut(s) 934
Eco130I CCWWGG 2 cut(s) 1053, 1219
Eco147I AGGCCT 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 936
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 3 cut(s) 26, 1418, 1603
Eco53kI GAGCTC 1 cut(s) 934
EcoICRI GAGCTC 1 cut(s) 934
EcoRI GAATTC 1 cut(s) 1047
EcoRII CCWGG 2 cut(s) 1414, 1605
EcoRV GATATC 1 cut(s) 372
EcoT14I CCWWGG 2 cut(s) 1053, 1219
EcoT22I ATGCAT 1 cut(s) 259
EcoT38I GRGCYC 1 cut(s) 936
ErhI CCWWGG 2 cut(s) 1053, 1219
FaeI CATG 4 cut(s) 261, 397, 517, 943
FatI CATG 4 cut(s) 257, 393, 513, 939
FauNDI CATATG 2 cut(s) 562, 1132
FbaI TGATCA 2 cut(s) 109, 327
Fnu4HI GCNGC 8 cut(s) 12, 177, 360, 549, 552, 1140, 1152, 1543
FokI GGATG 1 cut(s) 1001
FriOI GRGCYC 1 cut(s) 936
Fsp4HI GCNGC 8 cut(s) 12, 177, 360, 549, 552, 1140, 1152, 1543
FspBI CTAG 1 cut(s) 1044
GluI GCNGC 8 cut(s) 12, 177, 360, 549, 552, 1140, 1152, 1543
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 5 cut(s) 159, 286, 413, 1301, 1631
Hin1II CATG 4 cut(s) 261, 397, 517, 943
HinfI GANTC 5 cut(s) 295, 470, 838, 875, 1407
HphI GGTGA 4 cut(s) 182, 320, 514, 722
Hpy166II GTNNAC 1 cut(s) 736
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 5 cut(s) 292, 569, 757, 1115, 1453
Hpy8I GTNNAC 1 cut(s) 736
HpyAV CCTTC 5 cut(s) 656, 766, 1397, 1570, 1621
HpyCH4III ACNGT 3 cut(s) 214, 451, 970
HpyCH4IV ACGT 1 cut(s) 1523
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 557, 1136, 1148, 1396, 1637
HpyF3I CTNAG 3 cut(s) 363, 474, 800
HpySE526I ACGT 1 cut(s) 1523
Hsp92II CATG 4 cut(s) 261, 397, 517, 943
Ksp22I TGATCA 2 cut(s) 109, 327
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 1 cut(s) 1093
Lsp1109I GCAGC 4 cut(s) 163, 563, 1126, 1138
MaeI CTAG 1 cut(s) 1044
MaeII ACGT 1 cut(s) 1523
MaeIII GTNAC 2 cut(s) 308, 1204
MboII GAAGA 9 cut(s) 366, 671, 725, 772, 816, 837, 941, 1367, 1579
MflI RGATCY 3 cut(s) 943, 1037, 1075
MhlI GDGCHC 3 cut(s) 738, 936, 1401
MlsI TGGCCA 1 cut(s) 1301
MluNI TGGCCA 1 cut(s) 1301
MlyI GAGTC 2 cut(s) 464, 832
Mox20I TGGCCA 1 cut(s) 1301
Mph1103I ATGCAT 1 cut(s) 259
MscI TGGCCA 1 cut(s) 1301
MseI TTAA 6 cut(s) 264, 534, 651, 1083, 1293, 1509
MslI CAYNNNNRTG 2 cut(s) 518, 705
Msp20I TGGCCA 1 cut(s) 1301
MspA1I CMGCKG 2 cut(s) 362, 1487
MspCI CTTAAG 1 cut(s) 1508
MspR9I CCNGG 2 cut(s) 1416, 1607
MvaI CCWGG 2 cut(s) 1416, 1607
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 6 cut(s) 11, 557, 1136, 1148, 1396, 1637
NdeI CATATG 2 cut(s) 562, 1132
NlaIII CATG 4 cut(s) 261, 397, 517, 943
NlaIV GGNNCC 1 cut(s) 27
NmeAIII GCCGAG 1 cut(s) 1393
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 2 cut(s) 261, 397
PceI AGGCCT 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 924
PcsI WCGNNNNNNNCGW 2 cut(s) 131, 891
PfeI GAWTC 3 cut(s) 295, 875, 1407
PkrI GCNGC 8 cut(s) 13, 178, 361, 550, 553, 1141, 1153, 1544
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 2 cut(s) 464, 832
PpsI GAGTC 2 cut(s) 464, 832
PsiI TTATAA 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 1414, 1605
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 2 cut(s) 1414, 1605
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 3 cut(s) 26, 1418, 1603
PstI CTGCAG 1 cut(s) 1156
PsuI RGATCY 3 cut(s) 943, 1037, 1075
PvuI CGATCG 1 cut(s) 88
RsaI GTAC 6 cut(s) 453, 631, 1059, 1146, 1314, 1592
RsaNI GTAC 6 cut(s) 452, 630, 1058, 1145, 1313, 1591
RseI CAYNNNNRTG 2 cut(s) 518, 705
SacI GAGCTC 1 cut(s) 936
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 6 cut(s) 264, 534, 651, 1083, 1293, 1509
SatI GCNGC 8 cut(s) 12, 177, 360, 549, 552, 1140, 1152, 1543
Sau96I GGNCC 3 cut(s) 26, 1418, 1603
SchI GAGTC 2 cut(s) 464, 832
ScrFI CCNGG 2 cut(s) 1416, 1607
SduI GDGCHC 3 cut(s) 738, 936, 1401
SfcI CTRYAG 1 cut(s) 1152
SinI GGWCC 3 cut(s) 26, 1418, 1603
SmiMI CAYNNNNRTG 2 cut(s) 518, 705
SmlI CTYRAG 2 cut(s) 1232, 1508
SmoI CTYRAG 2 cut(s) 1232, 1508
SseBI AGGCCT 1 cut(s) 413
SsiI CCGC 5 cut(s) 11, 360, 549, 1485, 1542
SspI AATATT 1 cut(s) 154
SspMI CTAG 1 cut(s) 1044
SstI GAGCTC 1 cut(s) 936
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 1414, 1605
StyI CCWWGG 2 cut(s) 1053, 1219
TaaI ACNGT 3 cut(s) 214, 451, 970
TaiI ACGT 1 cut(s) 1526
TaqI TCGA 8 cut(s) 42, 615, 756, 885, 894, 1401, 1452, 1458
TatI WGTACW 1 cut(s) 1590
TauI GCSGC 4 cut(s) 14, 362, 551, 1545
TfiI GAWTC 3 cut(s) 295, 875, 1407
Tru1I TTAA 6 cut(s) 264, 534, 651, 1083, 1293, 1509
Tru9I TTAA 6 cut(s) 264, 534, 651, 1083, 1293, 1509
TscAI CASTG 2 cut(s) 773, 804
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 4 cut(s) 176, 551, 1139, 1151
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 7 cut(s) 290, 357, 449, 530, 1134, 1506, 1589
TspRI CASTG 2 cut(s) 773, 804
Vha464I CTTAAG 1 cut(s) 1508
VneI GTGCAC 1 cut(s) 734
VpaK11BI GGWCC 3 cut(s) 26, 1418, 1603
XapI RAATTY 3 cut(s) 245, 923, 1047
XceI RCATGY 2 cut(s) 261, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 1639
XspI CTAG 1 cut(s) 1044
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.