Rh3DG364900

Activating signal cointegrator 1 complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0017748
Physical Location & Seq
Forward (+)
45565353 .. 45596557
31205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG364900.1

Sequence Viewer

Length: 318 bp
ATGAGAGCACGTGTTTCTCCGCCTGTGGCTGCCCAATATCTATCCAATCCATTAAGAGGAAAACTACTGAAGAGAGTGCAAGAAAGGAGGGCAAGTGAGACCTCAGAGCATGAAAACCCATCTCCAGATACTGATCCGGAAAAATTCATTAGTTCCTTGAAGGACAATTTAAATGCAGAGGTGGCACTTGGAACTGTCATCGATGTCAAGAAAGTTTGTGCATGGCTTGGATATACAGACCTTTTTATAAGGATGAGGCTCAACCCTTTGGCATACGGTATCGCAAGGGAGGAGGTACTGTGTGTTGATTACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD Helicase_C Sec63

Protein Analysis

105

Amino Acids

11.85

Weight (kDa)

7.76

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_SNRNP200 PF23445 48 - 98 2.7e-10 Winged Helix-turn-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 89
AcvI CACGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 131
Aor13HI TCCGGA 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 92
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 79, 109, 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse8I GATNNNNATC 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 136
BseCI ATCGAT 1 cut(s) 201
BseGI GGATG 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 136
BspPI GGATC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 92
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 196, 278, 300
Bst6I CTCTTC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 258
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 131
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 296
CviAII CATG 2 cut(s) 110, 222
CviJI RGCY 3 cut(s) 29, 226, 259
CviKI_1 RGCY 3 cut(s) 29, 226, 259
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraI TTTAAA 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
EciI GGCGGA 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 89
Eco72I CACGTG 1 cut(s) 11
FaeI CATG 2 cut(s) 113, 225
FaiI YATR 5 cut(s) 111, 223, 234, 248, 274
FatI CATG 2 cut(s) 109, 221
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 265
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 137
Hin1II CATG 2 cut(s) 113, 225
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 3 cut(s) 125, 137, 208
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 3 cut(s) 196, 278, 300
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 79, 176, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 2 cut(s) 113, 225
Kpn2I TCCGGA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 3 cut(s) 36, 138, 150
Lsp1109I GCAGC 1 cut(s) 16
MaeII ACGT 1 cut(s) 10
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 2 cut(s) 143, 166
MnlI CCTC 7 cut(s) 50, 81, 112, 172, 249, 283, 286
MroI TCCGGA 1 cut(s) 136
MseI TTAA 3 cut(s) 53, 170, 316
MspI CCGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 113, 225
PkrI GCNGC 1 cut(s) 31
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
Ppu21I YACGTR 1 cut(s) 11
PsiI TTATAA 1 cut(s) 248
PspCI CACGTG 1 cut(s) 11
PstNI CAGNNNCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 53, 170, 316
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 10
SetI ASST 5 cut(s) 13, 104, 183, 243, 297
SmiI ATTTAAAT 1 cut(s) 171
Sse9I AATT 2 cut(s) 143, 166
SsiI CCGC 1 cut(s) 20
SwaI ATTTAAAT 1 cut(s) 171
TaaI ACNGT 3 cut(s) 196, 278, 300
TaiI ACGT 1 cut(s) 13
TaqI TCGA 1 cut(s) 201
TasI AATT 2 cut(s) 143, 166
Tru1I TTAA 3 cut(s) 53, 170, 316
Tru9I TTAA 3 cut(s) 53, 170, 316
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 126, 136
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.