Rorug05G0380500

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017748
Physical Location & Seq
Forward (+)
51648492 .. 51655964
7473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0380500.1

Sequence Viewer

Length: 1410 bp
ATGTCCTTGGGTTATGCAGAGAAGCTTTCCTACATTGAAGATGTGGGCAGCGTGGGAATGTCTGAACATTTCGACGCCCCTGAAGTTCTGCAACAAAAGATTGAACAGCTTGCCCTGCTGGTACAGAAGAGTAAGCATCTAGTGGTGTTTACAGGTGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCAAAGGGAATTTGGACTCTTCAGCGTGAAGGCAAAGCCTTGCCAGAAGCATCGTTGCCATTTCATCGTGCAATGCCGAGCTTGACTCATATGGCTTTGGTTGCGCTGGAGAGGGCTGGCATACTGAAGTTTGTTATTAGCCAGAATGTTGATGGACTCCATCTTCGATCTGGAATACCAAGAAAGAAACTTGCGGAGTTGCATGGTAACTCCTTTATGGAAGTCTGCCCTTCTTGTGGCATTGAGTATATGCGGGATTTTGAGGTAGAAACTATTGGCCTAAAGGAGACTTCCAGAAGGTGCTCAGATAAAAAGTGTGGAGCAAGGCTTAAGGATACAGTTCTTGACTGGGAGGATGCATTGCCCTCAAAGGAGATGAATCAGGCTGAAAAGCACTGCAGAATGGCTGATGTTGTTTTATGTTTGGGAACAAGTTTGCAGATCACACCAGCATGCAACCTACCTCTGAGATCACTCCGTGGTGGGGGAAAGATTGTAATTGTTAATCTTCAGAAAACTCCAAAGGACAAGAAGGCAACTTTACTGCTCCATGGGCTTGTAGATAAGGTTATTTCAGGTGTCTTGGACAGTCTAAATCTTCAGATTCCTCCATTTGTTCGGATAGATCTTTTTCAGATCATTCTAACTCAAGCATTGAGTATAGATGAAAAGTATGTGAACTGGAACCTCCGGGTAGCAAGTGTACATGGACTTAAAGCTCCATTGCCATTCATCAAATCTATTGAGATATCCTTCGTAGACAACCAAGATTATAAAGCAGCTATTCTACAGAACGAGCCATTTCAACTGAAAAGGAGAACCTCACAGTCAAAATCAATTGAAATGGTTTTGAAATTCAACTTCATTGATGGTTGTGGTTGTCCATTCACAGAGATTAACGTGTCTCTCAATTGGGAGGTTTCAACAGACCATTCTAAGCTTGATAAAGATGCCATATTGCAAAAGCTCAGAGACACAGCTACTGATGAATCATGCTGCGGCAAGAATGCTGTTGTTGAGAGAAATTTCATCCCTAGCCCAAAAACTGAGGTTCTTACGTATGCCATTGTAACCAACGTTGTCACGTATAAGAAGACCACTGAAGCTGTGCAAGCTGACACTCTAAGTAATGGGGTTAAAAGGCGGAAGAACGATGGTCCTGCAACATCTAAGAAACGATCTAAAGTGCAAAGGCGCAAATCTAGGCTTTAG

Protein Analysis

469

Amino Acids

52.16

Weight (kDa)

9.15

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIR2 PF02146 87 - 216 4.9e-21 Sir2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 972
AccI GTMKAC 2 cut(s) 181, 957
AciI CCGC 4 cut(s) 392, 451, 1197, 1342
AclI AACGTT 1 cut(s) 1275
AcsI RAATTY 3 cut(s) 207, 1052, 1222
AcuI CTGAAG 6 cut(s) 102, 203, 344, 692, 782, 1320
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 2 cut(s) 123, 903
AfiI CCNNNNNNNGG 2 cut(s) 434, 682
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 1098
AgsI TTSAA 7 cut(s) 38, 104, 1004, 1040, 1051, 1057, 1122
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 479, 1107, 1164
AlwNI CAGNNNCTG 1 cut(s) 1181
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 3 cut(s) 48, 977, 1194
ApoI RAATTY 3 cut(s) 207, 1052, 1222
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AspLEI GCGC 2 cut(s) 304, 1395
AspS9I GGNCC 2 cut(s) 197, 1355
AsuC2I CCSGG 1 cut(s) 890
AvaII GGWCC 2 cut(s) 197, 1355
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BbsI GAAGAC 1 cut(s) 1298
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 3 cut(s) 60, 989, 1181
BccI CCATC 4 cut(s) 344, 366, 1061, 1346
BcgI CGANNNNNNTGC 2 cut(s) 1340, 1374
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 1 cut(s) 890
BcoDI GTCTC 3 cut(s) 479, 1107, 1164
BfaI CTAG 3 cut(s) 140, 1233, 1401
BfmI CTRYAG 2 cut(s) 595, 986
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 526
BglII AGATCT 1 cut(s) 823
BisI GCNGC 4 cut(s) 49, 978, 1195, 1198
BlsI GCNGC 4 cut(s) 50, 979, 1196, 1199
Bme1390I CCNGG 1 cut(s) 890
Bme18I GGWCC 2 cut(s) 197, 1355
BmgT120I GGNCC 2 cut(s) 197, 1355
BmiI GGNNCC 1 cut(s) 884
BmrFI CCNGG 1 cut(s) 890
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 4 cut(s) 145, 257, 544, 1138
BmuI ACTGGG 1 cut(s) 556
BpiI GAAGAC 1 cut(s) 1298
BplI GAGNNNNNCTC 2 cut(s) 268, 300
BpmI CTGGAG 1 cut(s) 326
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 1 cut(s) 890
BsaAI YACGTR 2 cut(s) 1257, 1284
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 6, 676, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 434, 682
Bse1I ACTGG 2 cut(s) 551, 884
Bse3DI GCAATG 3 cut(s) 276, 557, 920
BseDI CCNNGG 3 cut(s) 6, 676, 748
BseGI GGATG 2 cut(s) 559, 1227
BseLI CCNNNNNNNGG 2 cut(s) 434, 682
BseMI GCAATG 3 cut(s) 276, 557, 920
BseMII CTCAG 4 cut(s) 516, 656, 1180, 1236
BseNI ACTGG 2 cut(s) 551, 884
BseXI GCAGC 3 cut(s) 60, 989, 1181
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 2 cut(s) 434, 682
BsmAI GTCTC 3 cut(s) 479, 1107, 1164
BsmI GAATGC 1 cut(s) 1210
BsnI GGCC 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 503
Bsp1407I TGTACA 1 cut(s) 901
Bsp143I GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
Bsp19I CCATGG 1 cut(s) 748
BspACI CCGC 4 cut(s) 392, 451, 1197, 1342
BspANI GGCC 1 cut(s) 477
BspCNI CTCAG 4 cut(s) 515, 657, 1179, 1237
BspLI GGNNCC 1 cut(s) 884
BspMAI CTGCAG 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 527
BsrDI GCAATG 3 cut(s) 276, 557, 920
BsrGI TGTACA 1 cut(s) 901
BsrI ACTGG 2 cut(s) 551, 884
BssECI CCNNGG 3 cut(s) 6, 676, 748
BssMI GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
BssNAI GTATAC 1 cut(s) 182
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 6, 748
Bst1107I GTATAC 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 538, 788, 1026
Bst6I CTCTTC 2 cut(s) 122, 222
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 901
BstBAI YACGTR 2 cut(s) 1257, 1284
BstC8I GCNNGC 4 cut(s) 111, 316, 652, 1311
BstDEI CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1322, 1368
BstDSI CCRYGG 2 cut(s) 676, 748
BstF5I GGATG 2 cut(s) 559, 1227
BstHHI GCGC 2 cut(s) 304, 1395
BstKTI GATC 6 cut(s) 368, 642, 671, 826, 837, 1379
BstMAI GTCTC 3 cut(s) 479, 1107, 1164
BstMBI GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
BstMWI GCNNNNNNNGC 4 cut(s) 115, 299, 751, 1310
BstNSI RCATGY 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 888
BstSFI CTRYAG 2 cut(s) 595, 986
BstSNI TACGTA 1 cut(s) 1257
BstV1I GCAGC 3 cut(s) 60, 989, 1181
BstV2I GAAGAC 1 cut(s) 1298
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 1 cut(s) 477
BtgI CCRYGG 2 cut(s) 676, 748
BtsCI GGATG 2 cut(s) 559, 1227
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 592, 1296
Cac8I GCNNGC 4 cut(s) 111, 316, 652, 1311
CaiI CAGNNNCTG 1 cut(s) 1181
CfoI GCGC 2 cut(s) 304, 1395
Cfr13I GGNCC 2 cut(s) 197, 1355
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 122, 902
CviAII CATG 5 cut(s) 401, 651, 749, 905, 1191
CviQI GTAC 2 cut(s) 122, 902
DdeI CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1322, 1368
DpnI GATC 6 cut(s) 367, 641, 670, 825, 836, 1378
DpnII GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
DraIII CACNNNGTG 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 122, 222
EarI CTCTTC 2 cut(s) 122, 222
EciI GGCGGA 1 cut(s) 1357
Eco105I TACGTA 1 cut(s) 1257
Eco130I CCWWGG 2 cut(s) 6, 748
Eco32I GATATC 1 cut(s) 948
Eco47I GGWCC 2 cut(s) 197, 1355
Eco57I CTGAAG 6 cut(s) 102, 203, 344, 692, 782, 1320
EcoRV GATATC 1 cut(s) 948
EcoT14I CCWWGG 2 cut(s) 6, 748
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 6, 748
FaeI CATG 5 cut(s) 404, 654, 752, 908, 1194
FatI CATG 5 cut(s) 400, 650, 748, 904, 1190
FauI CCCGC 1 cut(s) 444
FauNDI CATATG 1 cut(s) 288
FblI GTMKAC 2 cut(s) 181, 957
Fnu4HI GCNGC 4 cut(s) 49, 978, 1195, 1198
FokI GGATG 2 cut(s) 566, 1214
Fsp4HI GCNGC 4 cut(s) 49, 978, 1195, 1198
FspBI CTAG 3 cut(s) 140, 1233, 1401
GlaI GCGC 2 cut(s) 303, 1394
GluI GCNGC 4 cut(s) 49, 978, 1195, 1198
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 1 cut(s) 477
HapII CCGG 1 cut(s) 889
HgaI GACGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 304, 1395
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 5 cut(s) 404, 654, 752, 908, 1194
Hin6I GCGC 2 cut(s) 302, 1393
HinP1I GCGC 2 cut(s) 302, 1393
HindIII AAGCTT 2 cut(s) 23, 1136
HinfI GANTC 6 cut(s) 214, 283, 354, 577, 802, 1187
HpaII CCGG 1 cut(s) 889
Hpy166II GTNNAC 5 cut(s) 150, 182, 877, 902, 958
Hpy188I TCNGA 8 cut(s) 64, 505, 666, 711, 801, 819, 834, 1169
Hpy188III TCNNGA 3 cut(s) 369, 492, 542
Hpy8I GTNNAC 5 cut(s) 150, 182, 877, 902, 958
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 5 cut(s) 221, 438, 489, 724, 961
HpyCH4III ACNGT 3 cut(s) 538, 788, 1026
HpyCH4IV ACGT 4 cut(s) 1098, 1256, 1275, 1283
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 299, 751, 1310
HpyF3I CTNAG 7 cut(s) 502, 665, 1134, 1166, 1245, 1322, 1368
HpySE526I ACGT 4 cut(s) 1098, 1256, 1275, 1283
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 5 cut(s) 404, 654, 752, 908, 1194
HspAI GCGC 2 cut(s) 302, 1393
Kzo9I GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
LmnI GCTCC 3 cut(s) 518, 750, 922
Lsp1109I GCAGC 3 cut(s) 60, 989, 1181
LweI GCATC 4 cut(s) 145, 257, 544, 1138
MaeI CTAG 3 cut(s) 140, 1233, 1401
MaeII ACGT 4 cut(s) 1098, 1256, 1275, 1283
MaeIII GTNAC 3 cut(s) 404, 1267, 1279
MalI GATC 6 cut(s) 367, 641, 670, 825, 836, 1378
MboI GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
MboII GAAGA 8 cut(s) 50, 139, 209, 353, 698, 788, 1303, 1357
MfeI CAATTG 2 cut(s) 1035, 1108
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 1 cut(s) 503
MluCI AATT 6 cut(s) 207, 696, 1035, 1052, 1108, 1222
MlyI GAGTC 3 cut(s) 208, 277, 348
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 5 cut(s) 528, 702, 912, 1095, 1335
MslI CAYNNNNRTG 1 cut(s) 649
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 1 cut(s) 890
MunI CAATTG 2 cut(s) 1035, 1108
Mva1269I GAATGC 1 cut(s) 1210
MwoI GCNNNNNNNGC 4 cut(s) 115, 299, 751, 1310
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 748
NdeI CATATG 1 cut(s) 288
NdeII GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
NlaIII CATG 5 cut(s) 404, 654, 752, 908, 1194
NlaIV GGNNCC 1 cut(s) 884
NmeAIII GCCGAG 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 1279
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 654
PaeI GCATGC 1 cut(s) 654
PctI GAATGC 1 cut(s) 1210
PfeI GAWTC 3 cut(s) 577, 802, 1187
PkrI GCNGC 4 cut(s) 50, 979, 1196, 1199
PleI GAGTC 3 cut(s) 208, 277, 348
PpsI GAGTC 3 cut(s) 208, 277, 348
Ppu21I YACGTR 2 cut(s) 1257, 1284
PsiI TTATAA 1 cut(s) 972
Psp1406I AACGTT 1 cut(s) 1275
PspN4I GGNNCC 1 cut(s) 884
PspPI GGNCC 2 cut(s) 197, 1355
PstI CTGCAG 1 cut(s) 599
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 2 cut(s) 123, 903
RsaNI GTAC 2 cut(s) 122, 902
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 5 cut(s) 528, 702, 912, 1095, 1335
SatI GCNGC 4 cut(s) 49, 978, 1195, 1198
Sau3AI GATC 6 cut(s) 365, 639, 668, 823, 834, 1376
Sau96I GGNCC 2 cut(s) 197, 1355
SchI GAGTC 3 cut(s) 208, 277, 348
ScrFI CCNGG 1 cut(s) 890
SduI GDGCHC 1 cut(s) 503
SfaNI GCATC 4 cut(s) 145, 257, 544, 1138
SfcI CTRYAG 2 cut(s) 595, 986
SinI GGWCC 2 cut(s) 197, 1355
SmiMI CAYNNNNRTG 1 cut(s) 649
SmlI CTYRAG 2 cut(s) 527, 846
SmoI CTYRAG 2 cut(s) 527, 846
SnaBI TACGTA 1 cut(s) 1257
SphI GCATGC 1 cut(s) 654
Sse9I AATT 6 cut(s) 207, 696, 1035, 1052, 1108, 1222
SsiI CCGC 4 cut(s) 392, 451, 1197, 1342
SspMI CTAG 3 cut(s) 140, 1233, 1401
StyD4I CCNGG 1 cut(s) 888
StyI CCWWGG 2 cut(s) 6, 748
TaaI ACNGT 3 cut(s) 538, 788, 1026
TaiI ACGT 4 cut(s) 1101, 1259, 1278, 1286
TaqI TCGA 3 cut(s) 72, 193, 364
TasI AATT 6 cut(s) 207, 696, 1035, 1052, 1108, 1222
TatI WGTACW 1 cut(s) 901
TauI GCSGC 1 cut(s) 1200
TfiI GAWTC 3 cut(s) 577, 802, 1187
Tru1I TTAA 5 cut(s) 528, 702, 912, 1095, 1335
Tru9I TTAA 5 cut(s) 528, 702, 912, 1095, 1335
TscAI CASTG 2 cut(s) 599, 1303
TseFI GTSAC 1 cut(s) 1279
TseI GCWGC 3 cut(s) 48, 977, 1194
Tsp45I GTSAC 1 cut(s) 1279
TspDTI ATGAA 7 cut(s) 251, 590, 879, 919, 1051, 1200, 1216
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 2 cut(s) 599, 1303
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 197, 1355
XapI RAATTY 3 cut(s) 207, 1052, 1222
XceI RCATGY 1 cut(s) 654
XcmI CCANNNNNNNNNTGG 3 cut(s) 207, 347, 365
XmiI GTMKAC 2 cut(s) 181, 957
XspI CTAG 3 cut(s) 140, 1233, 1401
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.