Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040399.1

Orthogroup ID

OG0017748

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 249

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040399.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 163 bp

atgtatggcttagaaggtgatgttctgacagaagatagtaagctggaggagaggcgagctgatttgatccattccgctgcaaccatcttggagaagaacaacatgatcaagtatgatagaaaaagtggatactttcatgttacagacttgggtcgcattgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

54

Amino Acids

6.18

Weight (kDa)

5.53

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017748)

Species	Orthologous Gene IDs
prunus_persica	Prupe.3G238700_v2.0.a1 Prupe.6G357800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0335081 RchiOBHm_Chr7g0224331
rosa_laevigata	RLG00000022526
rosa_multiflora	Rmu_sc0040399.1_g000001
rosa_rugosa	Rorug05G0380500 Rorug06G0022000 Rorug07G0325000
rosa_samantha	Rh3CG362000 Rh3DG364900 Rh7DG366200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	61
AluBI	AGCT	2 cut(s)	43, 59
AluI	AGCT	2 cut(s)	43, 59
AlwI	GGATC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	122
BclI	TGATCA	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	122
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	66, 105
BspACI	CCGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	2 cut(s)	66, 105
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	69, 108
BstMBI	GATC	2 cut(s)	66, 105
BstPAI	GACNNNNGTC	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	57
CviAII	CATG	2 cut(s)	103, 137
CviJI	RGCY	3 cut(s)	9, 43, 59
CviKI_1	RGCY	3 cut(s)	9, 43, 59
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	2 cut(s)	68, 107
DpnII	GATC	2 cut(s)	66, 105
FaeI	CATG	2 cut(s)	106, 140
FaiI	YATR	4 cut(s)	6, 104, 114, 138
FatI	CATG	2 cut(s)	102, 136
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	65
Hin1II	CATG	2 cut(s)	106, 140
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	106, 140
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	66, 105
LpnPI	CCDG	1 cut(s)	29
Lsp1109I	GCAGC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	68, 107
MboI	GATC	2 cut(s)	66, 105
MboII	GAAGA	2 cut(s)	44, 106
MnlI	CCTC	2 cut(s)	40, 45
MspA1I	CMGCKG	1 cut(s)	77
NdeII	GATC	2 cut(s)	66, 105
NlaIII	CATG	2 cut(s)	106, 140
PkrI	GCNGC	1 cut(s)	79
PshAI	GACNNNNGTC	1 cut(s)	150
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	66, 105
SetI	ASST	3 cut(s)	19, 45, 61
SgeI	CNNG	6 cut(s)	56, 68, 100, 115, 121, 149
SsiI	CCGC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.