Prupe.7G069900_v2.0.a1

pentatricopeptide repeat-containing protein At3g13770

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
10785425 .. 10787390
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G069900.1

Sequence Viewer

Length: 1716 bp
ATGGCCGTTCAAGGCCTTGAGATGAAGTTTGAAGGCTACTACACGCTGTTAAACGAGTGTGTAAACCGAAGGGCCTTCAGGGAAGGCCAAAGAGTCCATGCCCACATGACCAAAACCTGTTACCTTCCGCCTATGCACCTCAGGACACGGTTGATCGTTTTCTATAATAACTGTGAATGTTTGAATGATGCACAGCGGGTGCTCGATGAAATGCCTGTACGAAATGTGGTGTCATGGACGGCAATGATTTCGGCTTATTCTAAGAGGGGGTGTGCCTCCGAAGCCTTGAATCTTTTTCTACAGATGTTAAGATCAGGTACGGAGCCTAATGAGTTCACTTTTGCAACAGTACTTACTTCATGTGCTGGTGGTGCGTGGGGGTTTGACTTAGGAAGGCAAATCCACTCTCTCATAATAAAAACAAAGTTTGAATCACATATATTTGTTGGAAGCTCACTTCTTGACATGTATGCCAAAGCTGGTAGAATCTATGAAGCCCGAGGAGTTTTCGAGTGCTTGCCAGAGAGGGATGTTGTTTCTTGTACTGCTATAATCTCTGGCTATGCCCAGCTGGGCCTTGATGAAGAGGCCTTGGAGCTATTCCGTCAGTTGCAGAGGGAAGGAATGACTTCAAACTATGTCACTTATGCTAGTGTGTTAACAGCATTATCAGGGCTTGCTGCATTGGACCTTGGCAGGCAAGTTCACAACCACGTCCTTCGTCGTGAACTGCCCTCATATGTGGTTCTTCAGAACTCGCTGATTGATATGTACTCTAAATGTGGAAACCTAAGTTACTCACGAAGGATCTTTGATAGCATGCCAGAGAGAACCGTTATATCATGGAATGCAATGCTTGTAGGGTATAGTAAGCATGGAATGGGAAAAGAGGTGGTTAAGCTTTTCAAACTAATGAAAGAAGAAAATAAAGTCAGACCAGACAGTGTCACTTTTTTGGCTGTTTTATCTGGTTGCAGTCACGGAGGAATGGAAGATAGAGGGCTAGAATATTTTTATGAGATGGCAGAAGGGGAAAATGGTACTGAGCCAGAGCTTGAGCACTATGGGTGTGTTGTTGATCTTCTCGGGCGTGCTGGTCGAGTTGAAGAGGCATTTGAGTTTATCAAAAAAATGCGTTTTGAACCAACTGCTGCTATATGGGGTTCACTTTTAGGTGCTTGTAGGGTTCACTCAAATGTTGAGATCGGTGAATTTGTGGGTTTTCGGCTTTTACAAATTGAACCTGAAAATGCTGGGAATTACGTAATTCTTTCTAATTTATATGCTTCTGTGGGGAGATGGGAAGGTGTAAGAAATGTAAGGGAATTGATGGTAGAGAAGGCCGTGATAAAGGAGCCAGGAAGAAGTTGGATTGAGCTTGACCAAATCCTTCATACTTTTCATGCAAAATTGTCAGTCAAACTACAGGTAGCTGGTTATGTTCCTGATTTGGGTTGCGTTTTATATGATGTGGATGAGGAGCAGAAGGAAAAAGTACTCCTAGGCCACAGTGAAAAGATGGCTTTGGCTTTTGGGCTGATTGCAACACCTGAAGGAGTGCCTGTACGTGTGATAAAAAACCTTCGAATTTGTGTCGATTGCCATAATTTTGCAAAACTTGTCTCAAAGATTTATGGAAGAGAAGTGTCTTTGAGAGATAAAAACCGATTTCATCACATTGTCGGAGGAACCTGTTCTTGTGGAGATTACTGGTGA

Protein Analysis

572

Amino Acids

64.38

Weight (kDa)

6.52

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13770 AT3G13770
fragaria_vesca FvH4_6g22980 FvH4_6g22980
malus_domestica MD14G1064300.v1.1
prunus_persica Prupe.7G069900_v2.0.a1
pyrus_communis pycom14g05200
rosa_chinensis RchiOBHm_Chr3g0480771
rosa_laevigata RLG00000023453
rosa_multiflora Rmu_sc0003902.1_g000010 Rmu_sc0007944.1_g000002
rosa_roxburghii Rroxscaffold_6G00401080
rosa_rugosa Rorug03G0186300
rosa_samantha Rh3DG263400
rosa_wichuraiana Rw3G021300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 128, 196
AclWI GGATC 1 cut(s) 815
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 1211, 1587
AcuI CTGAAG 3 cut(s) 61, 734, 1572
AfaI GTAC 8 cut(s) 219, 319, 351, 544, 773, 1042, 1497, 1566
AfiI CCNNNNNNNGG 1 cut(s) 1451
AflIII ACRYGT 2 cut(s) 465, 1567
AjiI CACGTC 1 cut(s) 715
AjnI CCWGG 1 cut(s) 1357
AluBI AGCT 8 cut(s) 453, 479, 571, 598, 901, 1054, 1378, 1433
AluI AGCT 8 cut(s) 453, 479, 571, 598, 901, 1054, 1378, 1433
Alw21I GWGCWC 2 cut(s) 204, 1062
Alw26I GTCTC 1 cut(s) 1627
AlwI GGATC 1 cut(s) 815
Ama87I CYCGRG 2 cut(s) 498, 1085
AoxI GGCC 8 cut(s) 3, 13, 72, 85, 574, 588, 1341, 1504
ApeKI GCWGC 2 cut(s) 680, 1151
ApoI RAATTY 2 cut(s) 1211, 1587
Asp700I GAANNNNTTC 2 cut(s) 628, 1693
AspA2I CCTAGG 1 cut(s) 1501
AspS9I GGNCC 3 cut(s) 72, 574, 688
AsuHPI GGTGA 1 cut(s) 1220
AsuII TTCGAA 1 cut(s) 1585
AvaI CYCGRG 2 cut(s) 498, 1085
AvaII GGWCC 1 cut(s) 688
AvrII CCTAGG 1 cut(s) 1501
AxyI CCTNAGG 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 204, 1062
BbvI GCAGC 2 cut(s) 667, 1138
BccI CCATC 4 cut(s) 1015, 1293, 1324, 1513
BceAI ACGGC 2 cut(s) 255, 1328
BcgI CGANNNNNNTGC 2 cut(s) 231, 265
BciT130I CCWGG 1 cut(s) 1359
BcoDI GTCTC 1 cut(s) 1627
BfaI CTAG 3 cut(s) 651, 1004, 1502
BfmI CTRYAG 2 cut(s) 299, 1424
BisI GCNGC 2 cut(s) 681, 1152
BlnI CCTAGG 1 cut(s) 1501
BlsI GCNGC 2 cut(s) 682, 1153
BmcAI AGTACT 2 cut(s) 351, 1497
Bme1390I CCNGG 1 cut(s) 1359
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 498, 1085
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 3 cut(s) 72, 574, 688
BmiI GGNNCC 3 cut(s) 324, 1356, 1690
BmrFI CCNGG 1 cut(s) 1359
BmsI GCATC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 1585
BpuEI CTTGAG 2 cut(s) 38, 1076
BsaAI YACGTR 2 cut(s) 1264, 1568
BsaJI CCNNGG 4 cut(s) 499, 591, 691, 1501
BsaXI ACNNNNNCTCC 2 cut(s) 1548, 1578
Bsc4I CCNNNNNNNGG 1 cut(s) 1451
Bse1I ACTGG 1 cut(s) 1715
Bse21I CCTNAGG 1 cut(s) 140
Bse3DI GCAATG 2 cut(s) 249, 858
BseBI CCWGG 1 cut(s) 1359
BseDI CCNNGG 4 cut(s) 499, 591, 691, 1501
BseGI GGATG 2 cut(s) 535, 1480
BseLI CCNNNNNNNGG 1 cut(s) 1451
BseMI GCAATG 2 cut(s) 249, 858
BseMII CTCAG 2 cut(s) 154, 1035
BseNI ACTGG 1 cut(s) 1715
BseRI GAGGAG 2 cut(s) 516, 1493
BseXI GCAGC 2 cut(s) 667, 1138
BseYI CCCAGC 3 cut(s) 567, 571, 1253
BshFI GGCC 8 cut(s) 5, 15, 74, 87, 576, 590, 1343, 1506
BsiHKAI GWGCWC 2 cut(s) 204, 1062
BsiHKCI CYCGRG 2 cut(s) 498, 1085
BslI CCNNNNNNNGG 1 cut(s) 1451
BsmAI GTCTC 1 cut(s) 1627
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 8 cut(s) 5, 15, 74, 87, 576, 590, 1343, 1506
BsoBI CYCGRG 2 cut(s) 498, 1085
Bsp119I TTCGAA 1 cut(s) 1585
Bsp1286I GDGCHC 2 cut(s) 204, 1062
Bsp143I GATC 5 cut(s) 153, 311, 807, 1078, 1203
BspACI CCGC 2 cut(s) 128, 196
BspANI GGCC 8 cut(s) 5, 15, 74, 87, 576, 590, 1343, 1506
BspCNI CTCAG 2 cut(s) 153, 1036
BspLI GGNNCC 3 cut(s) 324, 1356, 1690
BspPI GGATC 1 cut(s) 815
BspT104I TTCGAA 1 cut(s) 1585
BsrDI GCAATG 2 cut(s) 249, 858
BsrI ACTGG 1 cut(s) 1715
BssECI CCNNGG 4 cut(s) 499, 591, 691, 1501
BssMI GATC 5 cut(s) 153, 311, 807, 1078, 1203
BssT1I CCWWGG 3 cut(s) 591, 691, 1501
Bst2UI CCWGG 1 cut(s) 1359
Bst4CI ACNGT 6 cut(s) 150, 173, 349, 835, 944, 1511
Bst6I CTCTTC 3 cut(s) 579, 1101, 1633
BstBAI YACGTR 2 cut(s) 1264, 1568
BstBI TTCGAA 1 cut(s) 1585
BstC8I GCNNGC 5 cut(s) 518, 678, 698, 821, 1092
BstDEI CTNAG 5 cut(s) 140, 261, 388, 791, 1044
BstF5I GGATG 2 cut(s) 535, 1480
BstKTI GATC 5 cut(s) 156, 314, 810, 1081, 1206
BstMAI GTCTC 1 cut(s) 1627
BstMBI GATC 5 cut(s) 153, 311, 807, 1078, 1203
BstMWI GCNNNNNNNGC 2 cut(s) 281, 371
BstNI CCWGG 1 cut(s) 1359
BstNSI RCATGY 2 cut(s) 469, 823
BstSCI CCNGG 1 cut(s) 1357
BstSFI CTRYAG 2 cut(s) 299, 1424
BstSNI TACGTA 1 cut(s) 1264
BstV1I GCAGC 2 cut(s) 667, 1138
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 140
BsuRI GGCC 8 cut(s) 5, 15, 74, 87, 576, 590, 1343, 1506
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 2 cut(s) 535, 1480
BtsIMutI CAGTG 2 cut(s) 949, 1516
Cac8I GCNNGC 5 cut(s) 518, 678, 698, 821, 1092
Cfr13I GGNCC 3 cut(s) 72, 574, 688
Csp6I GTAC 8 cut(s) 218, 318, 350, 543, 772, 1041, 1496, 1565
CviAII CATG 9 cut(s) 98, 106, 234, 360, 466, 820, 843, 875, 1403
CviQI GTAC 8 cut(s) 218, 318, 350, 543, 772, 1041, 1496, 1565
DdeI CTNAG 5 cut(s) 140, 261, 388, 791, 1044
DpnI GATC 5 cut(s) 155, 313, 809, 1080, 1205
DpnII GATC 5 cut(s) 153, 311, 807, 1078, 1203
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 579, 1101, 1633
EarI CTCTTC 3 cut(s) 579, 1101, 1633
EciI GGCGGA 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 1264
Eco130I CCWWGG 3 cut(s) 591, 691, 1501
Eco147I AGGCCT 2 cut(s) 15, 590
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 3 cut(s) 61, 734, 1572
Eco81I CCTNAGG 1 cut(s) 140
Eco88I CYCGRG 2 cut(s) 498, 1085
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 1357
EcoT14I CCWWGG 3 cut(s) 591, 691, 1501
ErhI CCWWGG 3 cut(s) 591, 691, 1501
FaeI CATG 9 cut(s) 101, 109, 237, 363, 469, 823, 846, 878, 1406
FatI CATG 9 cut(s) 97, 105, 233, 359, 465, 819, 842, 874, 1402
FauI CCCGC 1 cut(s) 189
FauNDI CATATG 1 cut(s) 739
Fnu4HI GCNGC 2 cut(s) 681, 1152
FokI GGATG 2 cut(s) 542, 1487
Fsp4HI GCNGC 2 cut(s) 681, 1152
FspBI CTAG 3 cut(s) 651, 1004, 1502
GluI GCNGC 2 cut(s) 681, 1152
GsaI CCCAGC 3 cut(s) 571, 575, 1257
HaeIII GGCC 8 cut(s) 5, 15, 74, 87, 576, 590, 1343, 1506
Hin1II CATG 9 cut(s) 101, 109, 237, 363, 469, 823, 846, 878, 1406
HincII GTYRAC 1 cut(s) 660
HindII GTYRAC 1 cut(s) 660
HindIII AAGCTT 1 cut(s) 899
HinfI GANTC 4 cut(s) 93, 289, 431, 486
HpaI GTTAAC 1 cut(s) 660
HphI GGTGA 1 cut(s) 1220
Hpy166II GTNNAC 7 cut(s) 64, 336, 660, 706, 728, 1166, 1189
Hpy188I TCNGA 4 cut(s) 280, 753, 935, 1685
Hpy188III TCNNGA 5 cut(s) 142, 461, 725, 801, 1445
Hpy8I GTNNAC 7 cut(s) 64, 336, 660, 706, 728, 1166, 1189
Hpy99I CGWCG 1 cut(s) 726
HpyCH4III ACNGT 6 cut(s) 150, 173, 349, 835, 944, 1511
HpyCH4IV ACGT 3 cut(s) 714, 1263, 1567
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 371
HpyF3I CTNAG 5 cut(s) 140, 261, 388, 791, 1044
HpySE526I ACGT 3 cut(s) 714, 1263, 1567
Hsp92II CATG 9 cut(s) 101, 109, 237, 363, 469, 823, 846, 878, 1406
KspAI GTTAAC 1 cut(s) 660
Kzo9I GATC 5 cut(s) 153, 311, 807, 1078, 1203
LmnI GCTCC 4 cut(s) 322, 595, 1354, 1480
Lsp1109I GCAGC 2 cut(s) 667, 1138
LweI GCATC 1 cut(s) 178
MaeI CTAG 3 cut(s) 651, 1004, 1502
MaeII ACGT 3 cut(s) 714, 1263, 1567
MaeIII GTNAC 5 cut(s) 119, 640, 794, 946, 977
MalI GATC 5 cut(s) 155, 313, 809, 1080, 1205
MboI GATC 5 cut(s) 153, 311, 807, 1078, 1203
MboII GAAGA 8 cut(s) 596, 740, 932, 1004, 1073, 1118, 1374, 1650
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 2 cut(s) 204, 1062
MluCI AATT 9 cut(s) 1211, 1236, 1258, 1266, 1276, 1325, 1409, 1587, 1606
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 3 cut(s) 427, 1349, 1663
MroXI GAANNNNTTC 2 cut(s) 628, 1693
MseI TTAA 4 cut(s) 50, 308, 659, 897
MslI CAYNNNNRTG 1 cut(s) 1194
MspA1I CMGCKG 2 cut(s) 196, 571
MspR9I CCNGG 1 cut(s) 1359
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 1 cut(s) 1359
MwoI GCNNNNNNNGC 2 cut(s) 281, 371
NdeI CATATG 1 cut(s) 739
NdeII GATC 5 cut(s) 153, 311, 807, 1078, 1203
NlaIII CATG 9 cut(s) 101, 109, 237, 363, 469, 823, 846, 878, 1406
NlaIV GGNNCC 3 cut(s) 324, 1356, 1690
NmuCI GTSAC 3 cut(s) 640, 946, 977
NspI RCATGY 2 cut(s) 469, 823
NspV TTCGAA 1 cut(s) 1585
PaeI GCATGC 1 cut(s) 823
PceI AGGCCT 2 cut(s) 15, 590
PciI ACATGT 1 cut(s) 465
PctI GAATGC 1 cut(s) 853
PdmI GAANNNNTTC 2 cut(s) 628, 1693
PfeI GAWTC 3 cut(s) 289, 431, 486
PflFI GACNNNGTC 1 cut(s) 944
PkrI GCNGC 2 cut(s) 682, 1153
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Ppu21I YACGTR 2 cut(s) 1264, 1568
PscI ACATGT 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 1357
PspFI CCCAGC 3 cut(s) 567, 571, 1253
PspGI CCWGG 1 cut(s) 1357
PspN4I GGNNCC 3 cut(s) 324, 1356, 1690
PspPI GGNCC 3 cut(s) 72, 574, 688
PsuI RGATCY 1 cut(s) 807
PsyI GACNNNGTC 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 571
RsaI GTAC 8 cut(s) 219, 319, 351, 544, 773, 1042, 1497, 1566
RsaNI GTAC 8 cut(s) 218, 318, 350, 543, 772, 1041, 1496, 1565
RseI CAYNNNNRTG 1 cut(s) 1194
SaqAI TTAA 4 cut(s) 50, 308, 659, 897
SatI GCNGC 2 cut(s) 681, 1152
Sau3AI GATC 5 cut(s) 153, 311, 807, 1078, 1203
Sau96I GGNCC 3 cut(s) 72, 574, 688
ScaI AGTACT 2 cut(s) 351, 1497
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 1 cut(s) 1359
SduI GDGCHC 2 cut(s) 204, 1062
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 2 cut(s) 299, 1424
SfuI TTCGAA 1 cut(s) 1585
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 1 cut(s) 1194
SmlI CTYRAG 2 cut(s) 17, 1055
SmoI CTYRAG 2 cut(s) 17, 1055
SnaBI TACGTA 1 cut(s) 1264
SphI GCATGC 1 cut(s) 823
Sse9I AATT 9 cut(s) 1211, 1236, 1258, 1266, 1276, 1325, 1409, 1587, 1606
SseBI AGGCCT 2 cut(s) 15, 590
SsiI CCGC 2 cut(s) 128, 196
SspI AATATT 1 cut(s) 1010
SspMI CTAG 3 cut(s) 651, 1004, 1502
StuI AGGCCT 2 cut(s) 15, 590
StyD4I CCNGG 1 cut(s) 1357
StyI CCWWGG 3 cut(s) 591, 691, 1501
TaaI ACNGT 6 cut(s) 150, 173, 349, 835, 944, 1511
TaiI ACGT 3 cut(s) 717, 1266, 1570
TaqI TCGA 5 cut(s) 204, 510, 1099, 1585, 1596
TasI AATT 9 cut(s) 1211, 1236, 1258, 1266, 1276, 1325, 1409, 1587, 1606
TatI WGTACW 4 cut(s) 349, 542, 771, 1495
TfiI GAWTC 3 cut(s) 289, 431, 486
Tru1I TTAA 4 cut(s) 50, 308, 659, 897
Tru9I TTAA 4 cut(s) 50, 308, 659, 897
TscAI CASTG 2 cut(s) 949, 1516
TseFI GTSAC 3 cut(s) 640, 946, 977
TseI GCWGC 2 cut(s) 680, 1151
Tsp45I GTSAC 3 cut(s) 640, 946, 977
TspDTI ATGAA 9 cut(s) 38, 222, 348, 507, 597, 929, 1382, 1391, 1661
TspGWI ACGGA 3 cut(s) 335, 593, 996
TspRI CASTG 2 cut(s) 949, 1516
Tth111I GACNNNGTC 1 cut(s) 944
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 2 cut(s) 1211, 1587
XceI RCATGY 2 cut(s) 469, 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 1365
XmaJI CCTAGG 1 cut(s) 1501
XmnI GAANNNNTTC 2 cut(s) 628, 1693
XspI CTAG 3 cut(s) 651, 1004, 1502
ZrmI AGTACT 2 cut(s) 351, 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.