Rroxscaffold_6G00401080

pentatricopeptide repeat-containing protein At3g13770

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0016038
Physical Location & Seq
Reverse (-)
23316496 .. 23319294
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401080.1

Sequence Viewer

Length: 1911 bp
ATGCAGAGAAGACTACCGTTCTTAGTTTGCAACCGTCATGTACTCGCTACCCCATTTTTCCGCCAACTATCCCTTTCATCCTTCCCGCCAAATTCACCGGCTTTAACATCTCTATGCTGCAACGGTCAACTAAGAGAAGCCCTGGTCGAAATGACCGTTCAAGGCCTTGACATGAAGTTCGAAGGCTACTACACGCTCTTGAACGAGTGTGTGAGCAGAAGGGCCTTGAGAGAAGGTCAAAGAGTCCATGCCCACATGATCAAAACCTGTTATCTTCCGCCGGTGCACCTCCGGACCCGGCTCATTGTTTTCTATAACAACTGTGATTGTTTGGGCGATGCACGCCGTGTGCTCGATGAAATGCCTCTGAGAAATGTGGTGTCGTGGACGGCCATGATTTCGGCTTATTCTAAGAGAGGGTACGCCTCCGAAGCGACCGATCTTTTTCTACAGATGTTAAGATCAGATGAGGGACCTAATGAGTTCACGTTTGCAACAGTACTTACTTCATGTACTGGTTCTTGGGGGTTTGACTTGGGCAGGCAAATCCACTCTCTTATAATAAAAACAAAGTATGAATCGCATATATTTGTTGGCAGCTCGCTTCTTGACATGTATGCCAAAGCTGGTGGAATACTTGAAGCGAGACGAGTTTTTGACAGCTTGCCTGAAAGGGATGTTGTCTCTTGTACAGCTATAATCTCTGGCTATGCCCAGCAGGGTCTTGATGAAGAGGCTTTGGAGCTGTTCCGGCAGTTGCAGAGGGAAGGAATGACCGCGAATTATGTCACTTATGCCAGTGTTTTGACAGCATTATCAGGGCTTGCTGCTTTGGACCTTGGCAGGCAAGTTCACAACCATGTGCTTCGTTGTGAAGTGCCTTCATATGTGGTTCTTCAGAACTCCCTGATTGATATGTACTCAAAATGTGGAAGGCTAAGTTACTCAAGACGAGTTTTTGATACCATGCCCGAGAGAACTGTTATCTCATGGAATGCAATGCTCGTAGGGTATAGTAAACATGGAATGGGTGAAGAGGTGGTTAAGCTTTTCAAGCTAATGAGAGAAGAAAATAAAATCAGACCAGACAGCGTCACTTTTTTGGCTGTTTTATCTGGTTGCAGTCATGGAGGAATGGAAGATAGAGGGATGGAATTCTTTTATGAGATGGCGAGAGGGGACAATGGAATTGAGCCAGAGCTTGAGCATTATGGATGTGTTGTTGATCTGCTTGGCCGTTCTGGTCGAGTTGAAGAAGCCTTTGAATTCATTAAAAAGATGCCTTCTGAGCCAACTGCTGCTATATGGGGTTCCCTTTTAGGTGCTTGTAGAGTTCACTCCAATGTTAAAATCGGTGAAGTTGTGGGTTTTCGGCTTCTAGAAATTGAACCTGAAAATGCTGGGAATTACGTCATTCTTTCTAATTTATTTGCTTCTGCAGGGAGATGGGAAGATGTAAGAACTGTAAGGGAATTAATGACACAGAAGGCTGTGATAAAGGAGCCAGGAAGAAGTTGGATTGAGCTTGACCAAGTCCTTCATACTTTTCATGCAAGTGATCGCTCCCATCCCAGAAGGGAAGAGGTATCTGCAAAGGTGAGAGAGATATCAGCAAAGTTAAAGGAAGTTGGTTACTCTCCTGATATGGGTTGTGTTTTATATGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTAGGCCACAGTGAAAAGATGGCTTTGGCTTTTGGGCTTATTGCTACTCCTGAAGGTGTGCCAGTCCGTGTGATAAAAAATCTTCGCATTTGTGTTGATTGCCATAATTTTGGGAAACTTGTCTCGAAGATATATGGAAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCACATGGTTGGAGGGATTTGCTCTTGTGGAGATTACTGGTGA

Protein Analysis

636

Amino Acids

71.75

Weight (kDa)

6.84

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 124 - 171 1.3e-09 PPR repeat family
PPR PF01535 127 - 155 8.3e-07 PPR repeat
PPR_2 PF13041 225 - 272 1.3e-08 PPR repeat family
PPR PF01535 228 - 257 6.3e-06 PPR repeat
PPR_2 PF13041 327 - 375 7e-10 PPR repeat family
PPR PF01535 329 - 357 1.2e-07 PPR repeat
E_motif PF20431 446 - 508 3.7e-19 E motif
DYW_deaminase PF14432 544 - 636 2e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13770 AT3G13770
fragaria_vesca FvH4_6g22980 FvH4_6g22980
malus_domestica MD14G1064300.v1.1
prunus_persica Prupe.7G069900_v2.0.a1
pyrus_communis pycom14g05200
rosa_chinensis RchiOBHm_Chr3g0480771
rosa_laevigata RLG00000023453
rosa_multiflora Rmu_sc0003902.1_g000010 Rmu_sc0007944.1_g000002
rosa_roxburghii Rroxscaffold_6G00401080
rosa_rugosa Rorug03G0186300
rosa_samantha Rh3DG263400
rosa_wichuraiana Rw3G021300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccII CGCG 1 cut(s) 779
AccIII TCCGGA 1 cut(s) 291
AciI CCGC 4 cut(s) 61, 86, 278, 777
AcoI YGGCCR 2 cut(s) 390, 1234
AcsI RAATTY 3 cut(s) 91, 1154, 1265
AcuI CTGAAG 2 cut(s) 881, 1767
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 6 cut(s) 42, 422, 501, 514, 691, 920
AfiI CCNNNNNNNGG 1 cut(s) 1646
AflIII ACRYGT 1 cut(s) 612
AgeI ACCGGT 1 cut(s) 1860
AgsI TTSAA 7 cut(s) 161, 202, 641, 1054, 1253, 1265, 1388
AjnI CCWGG 2 cut(s) 141, 1504
AluBI AGCT 9 cut(s) 600, 626, 663, 695, 745, 1048, 1057, 1201, 1525
AluI AGCT 9 cut(s) 600, 626, 663, 695, 745, 1048, 1057, 1201, 1525
Alw21I GWGCWC 2 cut(s) 288, 354
Alw26I GTCTC 3 cut(s) 640, 688, 1822
Alw44I GTGCAC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 291
AoxI GGCC 5 cut(s) 163, 222, 390, 1234, 1699
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 117, 597, 827, 1298
ApoI RAATTY 3 cut(s) 91, 1154, 1265
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AseI ATTAAT 1 cut(s) 1475
AsiGI ACCGGT 1 cut(s) 1860
AspS9I GGNCC 4 cut(s) 222, 294, 473, 835
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 4 cut(s) 87, 1043, 1367, 1609
AsuII TTCGAA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 971
AvaII GGWCC 3 cut(s) 294, 473, 835
BaeGI GKGCMC 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 288, 354
BbvI GCAGC 4 cut(s) 104, 609, 814, 1285
BccI CCATC 5 cut(s) 1144, 1162, 1440, 1575, 1708
BceAI ACGGC 3 cut(s) 330, 405, 1221
BciT130I CCWGG 2 cut(s) 143, 1506
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 1 cut(s) 298
BcoDI GTCTC 3 cut(s) 640, 688, 1822
BfaI CTAG 2 cut(s) 1379, 1697
BfmI CTRYAG 2 cut(s) 449, 1437
BisI GCNGC 4 cut(s) 118, 598, 828, 1299
BlsI GCNGC 4 cut(s) 119, 599, 829, 1300
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 3 cut(s) 143, 298, 1506
Bme18I GGWCC 3 cut(s) 294, 473, 835
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 4 cut(s) 222, 294, 473, 835
BmiI GGNNCC 4 cut(s) 296, 474, 1312, 1503
BmrFI CCNGG 3 cut(s) 143, 298, 1506
BmsI GCATC 2 cut(s) 328, 1269
BpiI GAAGAC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 3 cut(s) 247, 931, 1223
BpuMI CCSGG 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 141, 838
BsaWI WCCGGW 2 cut(s) 291, 1860
Bsc4I CCNNNNNNNGG 1 cut(s) 1646
Bse118I RCCGGY 3 cut(s) 97, 280, 1860
Bse1I ACTGG 4 cut(s) 520, 798, 1757, 1910
Bse3DI GCAATG 1 cut(s) 1005
BseAI TCCGGA 1 cut(s) 291
BseBI CCWGG 2 cut(s) 143, 1506
BseDI CCNNGG 2 cut(s) 141, 838
BseGI GGATG 6 cut(s) 77, 682, 1155, 1220, 1567, 1675
BseLI CCNNNNNNNGG 1 cut(s) 1646
BseMI GCAATG 1 cut(s) 1005
BseMII CTCAG 2 cut(s) 359, 1278
BseNI ACTGG 4 cut(s) 520, 798, 1757, 1910
BseRI GAGGAG 1 cut(s) 1688
BseSI GKGCMC 1 cut(s) 288
BseXI GCAGC 4 cut(s) 104, 609, 814, 1285
BseYI CCCAGC 2 cut(s) 714, 1400
Bsh1236I CGCG 1 cut(s) 779
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 5 cut(s) 165, 224, 392, 1236, 1701
BshTI ACCGGT 1 cut(s) 1860
BsiEI CGRYCG 1 cut(s) 438
BsiHKAI GWGCWC 2 cut(s) 288, 354
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 6 cut(s) 98, 281, 292, 298, 751, 1861
BslFI GGGAC 2 cut(s) 486, 1193
BslI CCNNNNNNNGG 1 cut(s) 1646
BsmAI GTCTC 3 cut(s) 640, 688, 1822
BsmBI CGTCTC 1 cut(s) 640
BsmFI GGGAC 2 cut(s) 486, 1193
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 5 cut(s) 165, 224, 392, 1236, 1701
BsoBI CYCGRG 1 cut(s) 971
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 2 cut(s) 288, 354
Bsp13I TCCGGA 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 689
Bsp143I GATC 5 cut(s) 258, 439, 461, 1225, 1558
BspACI CCGC 4 cut(s) 61, 86, 278, 777
BspANI GGCC 5 cut(s) 165, 224, 392, 1236, 1701
BspCNI CTCAG 2 cut(s) 360, 1279
BspEI TCCGGA 1 cut(s) 291
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 4 cut(s) 296, 474, 1312, 1503
BspMAI CTGCAG 1 cut(s) 1441
BspT104I TTCGAA 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 1005
BsrFI RCCGGY 3 cut(s) 97, 280, 1860
BsrGI TGTACA 1 cut(s) 689
BsrI ACTGG 4 cut(s) 520, 798, 1757, 1910
BssAI RCCGGY 3 cut(s) 97, 280, 1860
BssECI CCNNGG 2 cut(s) 141, 838
BssMI GATC 5 cut(s) 258, 439, 461, 1225, 1558
BssT1I CCWWGG 1 cut(s) 838
Bst2UI CCWGG 2 cut(s) 143, 1506
Bst4CI ACNGT 9 cut(s) 18, 35, 125, 157, 323, 499, 982, 1465, 1706
Bst6I CTCTTC 4 cut(s) 726, 1029, 1575, 1828
BstAUI TGTACA 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 6 cut(s) 343, 542, 602, 665, 825, 845
BstDEI CTNAG 6 cut(s) 22, 131, 368, 411, 938, 1287
BstF5I GGATG 6 cut(s) 77, 682, 1155, 1220, 1567, 1675
BstFNI CGCG 1 cut(s) 779
BstKTI GATC 5 cut(s) 261, 442, 464, 1228, 1561
BstMAI GTCTC 3 cut(s) 640, 688, 1822
BstMBI GATC 5 cut(s) 258, 439, 461, 1225, 1558
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 342, 431, 751, 1054, 1288
BstNI CCWGG 2 cut(s) 143, 1506
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 3 cut(s) 141, 296, 1504
BstSFI CTRYAG 2 cut(s) 449, 1437
BstSLI GKGCMC 1 cut(s) 288
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 4 cut(s) 104, 609, 814, 1285
BstV2I GAAGAC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 1805
BsuRI GGCC 5 cut(s) 165, 224, 392, 1236, 1701
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 6 cut(s) 77, 682, 1155, 1220, 1567, 1675
BtsIMutI CAGTG 2 cut(s) 805, 1711
Cac8I GCNNGC 6 cut(s) 343, 542, 602, 665, 825, 845
Cfr10I RCCGGY 3 cut(s) 97, 280, 1860
Cfr13I GGNCC 4 cut(s) 222, 294, 473, 835
CseI GACGC 1 cut(s) 1081
Csp6I GTAC 6 cut(s) 41, 421, 500, 513, 690, 919
CspAI ACCGGT 1 cut(s) 1860
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviQI GTAC 6 cut(s) 41, 421, 500, 513, 690, 919
DdeI CTNAG 6 cut(s) 22, 131, 368, 411, 938, 1287
DpnI GATC 5 cut(s) 260, 441, 463, 1227, 1560
DpnII GATC 5 cut(s) 258, 439, 461, 1225, 1558
DraIII CACNNNGTG 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 390, 1234
Eam1104I CTCTTC 4 cut(s) 726, 1029, 1575, 1828
EarI CTCTTC 4 cut(s) 726, 1029, 1575, 1828
EciI GGCGGA 2 cut(s) 50, 267
Eco130I CCWWGG 1 cut(s) 838
Eco147I AGGCCT 1 cut(s) 165
Eco32I GATATC 1 cut(s) 1608
Eco47I GGWCC 3 cut(s) 294, 473, 835
Eco57I CTGAAG 2 cut(s) 881, 1767
Eco88I CYCGRG 1 cut(s) 971
EcoO109I RGGNCCY 2 cut(s) 222, 473
EcoRI GAATTC 2 cut(s) 1154, 1265
EcoRII CCWGG 2 cut(s) 141, 1504
EcoRV GATATC 1 cut(s) 1608
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
Esp3I CGTCTC 1 cut(s) 640
FaqI GGGAC 2 cut(s) 486, 1193
FauI CCCGC 1 cut(s) 93
FauNDI CATATG 1 cut(s) 886
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 118, 598, 828, 1299
FokI GGATG 6 cut(s) 64, 689, 1162, 1227, 1554, 1682
Fsp4HI GCNGC 4 cut(s) 118, 598, 828, 1299
FspBI CTAG 2 cut(s) 1379, 1697
GluI GCNGC 4 cut(s) 118, 598, 828, 1299
GsaI CCCAGC 2 cut(s) 718, 1404
HaeIII GGCC 5 cut(s) 165, 224, 392, 1236, 1701
HapII CCGG 6 cut(s) 98, 281, 292, 298, 751, 1861
HgaI GACGC 1 cut(s) 1081
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 1046
HinfI GANTC 2 cut(s) 243, 578
HpaII CCGG 6 cut(s) 98, 281, 292, 298, 751, 1861
HphI GGTGA 4 cut(s) 87, 1043, 1367, 1609
Hpy166II GTNNAC 7 cut(s) 128, 286, 387, 486, 853, 1019, 1336
Hpy188I TCNGA 6 cut(s) 369, 430, 466, 900, 1082, 1288
Hpy188III TCNNGA 9 cut(s) 199, 292, 608, 725, 948, 1379, 1640, 1745, 1819
Hpy8I GTNNAC 7 cut(s) 128, 286, 387, 486, 853, 1019, 1336
HpyCH4III ACNGT 9 cut(s) 18, 35, 125, 157, 323, 499, 982, 1465, 1706
HpyCH4IV ACGT 2 cut(s) 488, 1410
HpyF10VI GCNNNNNNNGC 5 cut(s) 342, 431, 751, 1054, 1288
HpyF3I CTNAG 6 cut(s) 22, 131, 368, 411, 938, 1287
HpySE526I ACGT 2 cut(s) 488, 1410
Kpn2I TCCGGA 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 5 cut(s) 258, 439, 461, 1225, 1558
LmnI GCTCC 4 cut(s) 742, 1501, 1568, 1675
Lsp1109I GCAGC 4 cut(s) 104, 609, 814, 1285
LweI GCATC 2 cut(s) 328, 1269
MaeI CTAG 2 cut(s) 1379, 1697
MaeII ACGT 2 cut(s) 488, 1410
MaeIII GTNAC 4 cut(s) 787, 941, 1093, 1631
MalI GATC 5 cut(s) 260, 441, 463, 1227, 1560
MboI GATC 5 cut(s) 258, 439, 461, 1225, 1558
MhlI GDGCHC 2 cut(s) 288, 354
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 2 cut(s) 1496, 1858
MroI TCCGGA 1 cut(s) 291
MseI TTAA 7 cut(s) 104, 458, 1044, 1272, 1347, 1475, 1619
MslI CAYNNNNRTG 4 cut(s) 112, 858, 1341, 1554
MspI CCGG 6 cut(s) 98, 281, 292, 298, 751, 1861
MspR9I CCNGG 3 cut(s) 143, 298, 1506
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 2 cut(s) 143, 1506
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 5 cut(s) 342, 431, 751, 1054, 1288
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 886
NdeII GATC 5 cut(s) 258, 439, 461, 1225, 1558
NlaIV GGNNCC 4 cut(s) 296, 474, 1312, 1503
NmuCI GTSAC 2 cut(s) 787, 1093
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 180
PceI AGGCCT 1 cut(s) 165
PciI ACATGT 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 1000
PfeI GAWTC 1 cut(s) 578
PflFI GACNNNGTC 2 cut(s) 1091, 1532
PinAI ACCGGT 1 cut(s) 1860
PkrI GCNGC 4 cut(s) 119, 599, 829, 1300
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PpuMI RGGWCCY 1 cut(s) 473
PscI ACATGT 1 cut(s) 612
PshBI ATTAAT 1 cut(s) 1475
PsiI TTATAA 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 141, 1504
PspFI CCCAGC 2 cut(s) 714, 1400
PspGI CCWGG 2 cut(s) 141, 1504
PspN4I GGNNCC 4 cut(s) 296, 474, 1312, 1503
PspPI GGNCC 4 cut(s) 222, 294, 473, 835
PspPPI RGGWCCY 1 cut(s) 473
PstI CTGCAG 1 cut(s) 1441
PsyI GACNNNGTC 2 cut(s) 1091, 1532
RsaI GTAC 6 cut(s) 42, 422, 501, 514, 691, 920
RsaNI GTAC 6 cut(s) 41, 421, 500, 513, 690, 919
RseI CAYNNNNRTG 4 cut(s) 112, 858, 1341, 1554
SaqAI TTAA 7 cut(s) 104, 458, 1044, 1272, 1347, 1475, 1619
SatI GCNGC 4 cut(s) 118, 598, 828, 1299
Sau3AI GATC 5 cut(s) 258, 439, 461, 1225, 1558
Sau96I GGNCC 4 cut(s) 222, 294, 473, 835
ScaI AGTACT 1 cut(s) 501
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 3 cut(s) 143, 298, 1506
SduI GDGCHC 2 cut(s) 288, 354
SfaNI GCATC 2 cut(s) 328, 1269
SfcI CTRYAG 2 cut(s) 449, 1437
SfuI TTCGAA 1 cut(s) 180
SgrAI CRCCGGYG 1 cut(s) 280
SinI GGWCC 3 cut(s) 294, 473, 835
SmiMI CAYNNNNRTG 4 cut(s) 112, 858, 1341, 1554
SmlI CTYRAG 3 cut(s) 226, 946, 1202
SmoI CTYRAG 3 cut(s) 226, 946, 1202
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 4 cut(s) 61, 86, 278, 777
SspMI CTAG 2 cut(s) 1379, 1697
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 141, 296, 1504
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 9 cut(s) 18, 35, 125, 157, 323, 499, 982, 1465, 1706
TaiI ACGT 2 cut(s) 491, 1413
TaqI TCGA 5 cut(s) 147, 180, 354, 1246, 1820
TaqII GACCGA 1 cut(s) 452
TatI WGTACW 5 cut(s) 40, 499, 512, 689, 918
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 7 cut(s) 104, 458, 1044, 1272, 1347, 1475, 1619
Tru9I TTAA 7 cut(s) 104, 458, 1044, 1272, 1347, 1475, 1619
TscAI CASTG 2 cut(s) 805, 1711
TseFI GTSAC 2 cut(s) 787, 1093
TseI GCWGC 4 cut(s) 117, 597, 827, 1298
Tsp45I GTSAC 2 cut(s) 787, 1093
TspGWI ACGGA 1 cut(s) 1751
TspRI CASTG 2 cut(s) 805, 1711
Tth111I GACNNNGTC 2 cut(s) 1091, 1532
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 294, 473, 835
VspI ATTAAT 1 cut(s) 1475
XapI RAATTY 3 cut(s) 91, 1154, 1265
XbaI TCTAGA 1 cut(s) 1378
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 1512
XspI CTAG 2 cut(s) 1379, 1697
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.