Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0016038

Physical Location & Seq

Genomic Coordinates Forward (+)

26178772 .. 26182264

Gene Structure 3493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGCAGAGAAGACTACCGTTCTTAGTTTGCAACCGTTACCATGTACTCCCTACCCCATTTTTCTGCCAACTATCCCTTTCATCCTTCCCGCCAAATTCACCGGCTTTAACATCTCTATGCTCCAACGGTCAACTGAAAGAAGCCCTGGTCGAAATGACCGTTCAAGGCCTTGACATGAAGTTCGAAGGCTACTACACGCTCTTGAACGAGTGTGTAACCAGAAGGGCCTTGAGAGAAGGTCAAAGAGTCCATGCCCACATGATCAAAACCTGTTATCTTCCGCCGGTGCACCTCCGGACCCGGCTCATTGTTTTCTATAACAACTGTGATTGTCTGGGCGACGCACGCCGTGTGCTCGATGAAATGCCTCTGAGAAATGTGGTGTCGTGGACGGCCATGATTTCGGCTTATTCTAAGAGAGGGTACGCCTCCAAAGCCACCGATCTTTTTCTACAGATGTTAAGATCAGATGAGGGACCTAATGAGTTCACGTTTGCAACGGTACTTACTTCATGTACTGGTTCTTGGGGGTTTGACTTGGGCAGGCAAATCCACTCTCTTATAATAAAAACAAAGTATGAATCGCATATATTTGTTGGCAGCTCGCTTCTTGACATGTATGCCAAAGCTGGTAGAATGCTTGAAGCGAGACGAGTTTTTGACAGCTTGCCTGAAAGGGATGTTGTCTCTTGTACGGCTATAATCTCTGGCTATGCCCAGCAGGGTCTTGATGAAGAGGCTTTGGAGCTGTTCCGGCAGTTGCAGAGGGAAGGAATGACTGCGAACTATGTCACTTATGCCAGTGTTTTGACGGCATTATCAGGGCTTGCTGCTTTGGACCTTGGCAGGCAAGTTCACAACCATGTGCTTCGTTGTGAAGTGCCTTCATATGTGGTTCTTCAGAACTCCCTGATTGATATGTACTCAAAATGTGGAAAGCTAAGTTACTCAAGACGAGTTTTTGATACCATGCCCGAGAGAACTGTTATCTCATGGAATGCAATGCTCGTAGGCTATAGTAAACATGGAATGGGAGAAGAGGTGGTTAAGCTTTTCAAGCTAATGAGAGAAGAAAATAAAATCAGACCAGACAGCATCACTTTTTTGGCTGTTTTATCTGGTTGCAGTCATGGAGGAATGGAAGATAGAGGGATGGAATTCTTTTATGAGATGGCGAGAGGGGACAATGGAATTGAGCCAGAGCTTGAGCATTATGGATGTGTTGTTGATCTGCTTGGCCGTTCTGGTCGAGTTGAAGAAGCCTTTGAATTCATTAAAAAGATGCCTTCTGAGCCAACTGCTGCTATATGGGGTTCCCTTTTAGGTGCTTGTAGAGTTCACTCCAATGTTAAAATCGGTGAATTTGTGGGTTTTCGGCTTCTAGAAATTGAACCTGAAAATGCTGGGAATTACGTCATTCTTTCTAATTTATTTGCTTCTGCAGGGAGATGGGAAGATGTAAGAACTGTAAGGGAATTAATGACAGAGAAAGCTGTGATAAAGGAGCCAGGAAGAAGTTGGATTGAGCTTGACCAAGTCCTTCATACTTTTCATGCAAGTGATCGCTCCCATCCCAGAAGGGAAGAGGTATCTGCAAAGGTGAGAGAGATATCAGCAAAGTTAAAGGAAGTTGGTTACTCTCCTGATATGGGTTGTGTTTTATATGATGTGGATGAGGAGCAGAAGGAGAAGATACTTCTAGGCCACAGTGAAAAGATGGCTTTGGCTTTTGGGCTTATTGCTACTCCTGAAGGTGTGCCAGTCCGTGTGATAAAAAATCTTCGCATTTGTGTTGATTGCCATAATTTTGGGAAACTTGTCTCGAAGGTATATGGAAGAGAAGTGTCTTTGAGAGATAAAAACCGGTTTCATCACATGGTTGGAGGGATTTGCTCTTGTGGAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

637

Amino Acids

72.0

Weight (kDa)

7.02

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	125 - 172	1.5e-09	PPR repeat family
PPR	PF01535	128 - 156	1.6e-06	PPR repeat
PPR_2	PF13041	226 - 273	1.3e-08	PPR repeat family
PPR	PF01535	229 - 258	6.3e-06	PPR repeat
PPR_2	PF13041	328 - 376	1.3e-09	PPR repeat family
PPR	PF01535	330 - 358	1.2e-07	PPR repeat
E_motif	PF20431	447 - 509	5.2e-19	E motif
DYW_deaminase	PF14432	545 - 637	2.6e-38	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13770 AT3G13770
fragaria_vesca	FvH4_6g22980 FvH4_6g22980
malus_domestica	MD14G1064300.v1.1
prunus_persica	Prupe.7G069900_v2.0.a1
pyrus_communis	pycom14g05200
rosa_chinensis	RchiOBHm_Chr3g0480771
rosa_laevigata	RLG00000023453
rosa_multiflora	Rmu_sc0003902.1_g000010 Rmu_sc0007944.1_g000002
rosa_roxburghii	Rroxscaffold_6G00401080
rosa_rugosa	Rorug03G0186300
rosa_samantha	Rh3DG263400
rosa_wichuraiana	Rw3G021300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	563
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	2 cut(s)	89, 281
AcoI	YGGCCR	2 cut(s)	393, 1237
AcsI	RAATTY	4 cut(s)	94, 1157, 1268, 1361
AcuI	CTGAAG	2 cut(s)	884, 1770
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	6 cut(s)	45, 425, 504, 517, 694, 923
AfiI	CCNNNNNNNGG	1 cut(s)	1649
AflIII	ACRYGT	1 cut(s)	615
AgeI	ACCGGT	1 cut(s)	1863
AgsI	TTSAA	7 cut(s)	164, 205, 644, 1057, 1256, 1268, 1391
AjnI	CCWGG	2 cut(s)	144, 1507
Alw21I	GWGCWC	2 cut(s)	291, 357
Alw26I	GTCTC	3 cut(s)	643, 691, 1825
Alw44I	GTGCAC	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	974
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	5 cut(s)	166, 225, 393, 1237, 1702
ApaLI	GTGCAC	1 cut(s)	287
ApeKI	GCWGC	3 cut(s)	600, 830, 1301
ApoI	RAATTY	4 cut(s)	94, 1157, 1268, 1361
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AseI	ATTAAT	1 cut(s)	1478
AsiGI	ACCGGT	1 cut(s)	1863
AspS9I	GGNCC	4 cut(s)	225, 297, 476, 838
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	90, 1370, 1612
AsuII	TTCGAA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	974
AvaII	GGWCC	3 cut(s)	297, 476, 838
BaeGI	GKGCMC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	291, 357
BbvI	GCAGC	3 cut(s)	612, 817, 1288
BccI	CCATC	5 cut(s)	1147, 1165, 1443, 1578, 1711
BceAI	ACGGC	5 cut(s)	333, 408, 711, 828, 1224
BciT130I	CCWGG	2 cut(s)	146, 1509
BclI	TGATCA	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	3 cut(s)	643, 691, 1825
BfaI	CTAG	2 cut(s)	1382, 1700
BfmI	CTRYAG	3 cut(s)	452, 1015, 1440
BisI	GCNGC	3 cut(s)	601, 831, 1302
BlsI	GCNGC	3 cut(s)	602, 832, 1303
Bme1390I	CCNGG	3 cut(s)	146, 301, 1509
Bme18I	GGWCC	3 cut(s)	297, 476, 838
BmeT110I	CYCGRG	1 cut(s)	974
BmgT120I	GGNCC	4 cut(s)	225, 297, 476, 838
BmiI	GGNNCC	4 cut(s)	299, 477, 1315, 1506
BmrFI	CCNGG	3 cut(s)	146, 301, 1509
BmsI	GCATC	2 cut(s)	1104, 1272
BpiI	GAAGAC	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	3 cut(s)	250, 934, 1226
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	144, 841
BsaWI	WCCGGW	2 cut(s)	294, 1863
BsaXI	ACNNNNNCTCC	2 cut(s)	1026, 1056
Bsc4I	CCNNNNNNNGG	1 cut(s)	1649
Bse118I	RCCGGY	3 cut(s)	100, 283, 1863
Bse1I	ACTGG	4 cut(s)	523, 801, 1760, 1913
Bse3DI	GCAATG	1 cut(s)	1008
BseAI	TCCGGA	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	146, 1509
BseDI	CCNNGG	2 cut(s)	144, 841
BseGI	GGATG	6 cut(s)	80, 685, 1158, 1223, 1570, 1678
BseLI	CCNNNNNNNGG	1 cut(s)	1649
BseMI	GCAATG	1 cut(s)	1008
BseMII	CTCAG	2 cut(s)	362, 1281
BseNI	ACTGG	4 cut(s)	523, 801, 1760, 1913
BseRI	GAGGAG	1 cut(s)	1691
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	612, 817, 1288
BseYI	CCCAGC	2 cut(s)	717, 1403
BshFI	GGCC	5 cut(s)	168, 227, 395, 1239, 1704
BshTI	ACCGGT	1 cut(s)	1863
BsiHKAI	GWGCWC	2 cut(s)	291, 357
BsiHKCI	CYCGRG	1 cut(s)	974
BsiSI	CCGG	6 cut(s)	101, 284, 295, 301, 754, 1864
BslFI	GGGAC	2 cut(s)	489, 1196
BslI	CCNNNNNNNGG	1 cut(s)	1649
BsmAI	GTCTC	3 cut(s)	643, 691, 1825
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	2 cut(s)	489, 1196
BsmI	GAATGC	2 cut(s)	642, 1003
BsnI	GGCC	5 cut(s)	168, 227, 395, 1239, 1704
BsoBI	CYCGRG	1 cut(s)	974
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	2 cut(s)	291, 357
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	261, 442, 464, 1228, 1561
BspACI	CCGC	2 cut(s)	89, 281
BspANI	GGCC	5 cut(s)	168, 227, 395, 1239, 1704
BspCNI	CTCAG	2 cut(s)	363, 1282
BspEI	TCCGGA	1 cut(s)	294
BspLI	GGNNCC	4 cut(s)	299, 477, 1315, 1506
BspMAI	CTGCAG	1 cut(s)	1444
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	1008
BsrFI	RCCGGY	3 cut(s)	100, 283, 1863
BsrI	ACTGG	4 cut(s)	523, 801, 1760, 1913
BssAI	RCCGGY	3 cut(s)	100, 283, 1863
BssECI	CCNNGG	2 cut(s)	144, 841
BssMI	GATC	5 cut(s)	261, 442, 464, 1228, 1561
BssT1I	CCWWGG	1 cut(s)	841
Bst2UI	CCWGG	2 cut(s)	146, 1509
Bst4CI	ACNGT	9 cut(s)	18, 35, 128, 160, 326, 502, 985, 1468, 1709
Bst6I	CTCTTC	4 cut(s)	729, 1032, 1578, 1831
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	6 cut(s)	346, 545, 605, 668, 828, 848
BstDEI	CTNAG	5 cut(s)	22, 371, 414, 941, 1290
BstF5I	GGATG	6 cut(s)	80, 685, 1158, 1223, 1570, 1678
BstKTI	GATC	5 cut(s)	264, 445, 467, 1231, 1564
BstMAI	GTCTC	3 cut(s)	643, 691, 1825
BstMBI	GATC	5 cut(s)	261, 442, 464, 1228, 1561
BstMWI	GCNNNNNNNGC	5 cut(s)	345, 434, 754, 1057, 1291
BstNI	CCWGG	2 cut(s)	146, 1509
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	3 cut(s)	144, 299, 1507
BstSFI	CTRYAG	3 cut(s)	452, 1015, 1440
BstSLI	GKGCMC	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	612, 817, 1288
BstV2I	GAAGAC	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	1808
BsuRI	GGCC	5 cut(s)	168, 227, 395, 1239, 1704
BtsCI	GGATG	6 cut(s)	80, 685, 1158, 1223, 1570, 1678
BtsIMutI	CAGTG	2 cut(s)	808, 1714
Cac8I	GCNNGC	6 cut(s)	346, 545, 605, 668, 828, 848
Cfr10I	RCCGGY	3 cut(s)	100, 283, 1863
Cfr13I	GGNCC	4 cut(s)	225, 297, 476, 838
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	6 cut(s)	44, 424, 503, 516, 693, 922
CspAI	ACCGGT	1 cut(s)	1863
CviQI	GTAC	6 cut(s)	44, 424, 503, 516, 693, 922
DdeI	CTNAG	5 cut(s)	22, 371, 414, 941, 1290
DpnI	GATC	5 cut(s)	263, 444, 466, 1230, 1563
DpnII	GATC	5 cut(s)	261, 442, 464, 1228, 1561
DraIII	CACNNNGTG	1 cut(s)	350
EaeI	YGGCCR	2 cut(s)	393, 1237
Eam1104I	CTCTTC	4 cut(s)	729, 1032, 1578, 1831
EarI	CTCTTC	4 cut(s)	729, 1032, 1578, 1831
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	841
Eco147I	AGGCCT	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	1611
Eco47I	GGWCC	3 cut(s)	297, 476, 838
Eco57I	CTGAAG	2 cut(s)	884, 1770
Eco88I	CYCGRG	1 cut(s)	974
EcoO109I	RGGNCCY	2 cut(s)	225, 476
EcoRI	GAATTC	2 cut(s)	1157, 1268
EcoRII	CCWGG	2 cut(s)	144, 1507
EcoRV	GATATC	1 cut(s)	1611
EcoT14I	CCWWGG	1 cut(s)	841
ErhI	CCWWGG	1 cut(s)	841
Esp3I	CGTCTC	1 cut(s)	643
FaqI	GGGAC	2 cut(s)	489, 1196
FauI	CCCGC	1 cut(s)	96
FauNDI	CATATG	1 cut(s)	889
FbaI	TGATCA	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	601, 831, 1302
FokI	GGATG	6 cut(s)	67, 692, 1165, 1230, 1557, 1685
Fsp4HI	GCNGC	3 cut(s)	601, 831, 1302
FspBI	CTAG	2 cut(s)	1382, 1700
GluI	GCNGC	3 cut(s)	601, 831, 1302
GsaI	CCCAGC	2 cut(s)	721, 1407
HaeIII	GGCC	5 cut(s)	168, 227, 395, 1239, 1704
HapII	CCGG	6 cut(s)	101, 284, 295, 301, 754, 1864
HgaI	GACGC	1 cut(s)	350
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	2 cut(s)	246, 581
HpaII	CCGG	6 cut(s)	101, 284, 295, 301, 754, 1864
HphI	GGTGA	3 cut(s)	90, 1370, 1612
Hpy166II	GTNNAC	7 cut(s)	131, 289, 390, 489, 856, 1022, 1339
Hpy188I	TCNGA	5 cut(s)	372, 469, 903, 1085, 1291
Hpy188III	TCNNGA	9 cut(s)	202, 295, 611, 728, 951, 1382, 1643, 1748, 1822
Hpy8I	GTNNAC	7 cut(s)	131, 289, 390, 489, 856, 1022, 1339
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	9 cut(s)	18, 35, 128, 160, 326, 502, 985, 1468, 1709
HpyCH4IV	ACGT	2 cut(s)	491, 1413
HpyF10VI	GCNNNNNNNGC	5 cut(s)	345, 434, 754, 1057, 1291
HpyF3I	CTNAG	5 cut(s)	22, 371, 414, 941, 1290
HpySE526I	ACGT	2 cut(s)	491, 1413
Kpn2I	TCCGGA	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	261
Kzo9I	GATC	5 cut(s)	261, 442, 464, 1228, 1561
LmnI	GCTCC	5 cut(s)	125, 745, 1504, 1571, 1678
Lsp1109I	GCAGC	3 cut(s)	612, 817, 1288
LweI	GCATC	2 cut(s)	1104, 1272
MaeI	CTAG	2 cut(s)	1382, 1700
MaeII	ACGT	2 cut(s)	491, 1413
MaeIII	GTNAC	5 cut(s)	35, 214, 790, 944, 1634
MalI	GATC	5 cut(s)	263, 444, 466, 1230, 1563
MboI	GATC	5 cut(s)	261, 442, 464, 1228, 1561
MhlI	GDGCHC	2 cut(s)	291, 357
MlyI	GAGTC	1 cut(s)	255
MmeI	TCCRAC	3 cut(s)	147, 1499, 1861
MroI	TCCGGA	1 cut(s)	294
MseI	TTAA	7 cut(s)	107, 461, 1047, 1275, 1350, 1478, 1622
MslI	CAYNNNNRTG	4 cut(s)	115, 861, 1344, 1557
MspI	CCGG	6 cut(s)	101, 284, 295, 301, 754, 1864
MspR9I	CCNGG	3 cut(s)	146, 301, 1509
Mva1269I	GAATGC	2 cut(s)	642, 1003
MvaI	CCWGG	2 cut(s)	146, 1509
MwoI	GCNNNNNNNGC	5 cut(s)	345, 434, 754, 1057, 1291
NciI	CCSGG	1 cut(s)	301
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	5 cut(s)	261, 442, 464, 1228, 1561
NlaIV	GGNNCC	4 cut(s)	299, 477, 1315, 1506
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	619
NspV	TTCGAA	1 cut(s)	183
PceI	AGGCCT	1 cut(s)	168
PciI	ACATGT	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PctI	GAATGC	2 cut(s)	642, 1003
PfeI	GAWTC	1 cut(s)	581
PflFI	GACNNNGTC	1 cut(s)	1535
PinAI	ACCGGT	1 cut(s)	1863
PkrI	GCNGC	3 cut(s)	602, 832, 1303
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	476
PscI	ACATGT	1 cut(s)	615
PshBI	ATTAAT	1 cut(s)	1478
PsiI	TTATAA	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	476
Psp6I	CCWGG	2 cut(s)	144, 1507
PspFI	CCCAGC	2 cut(s)	717, 1403
PspGI	CCWGG	2 cut(s)	144, 1507
PspN4I	GGNNCC	4 cut(s)	299, 477, 1315, 1506
PspPI	GGNCC	4 cut(s)	225, 297, 476, 838
PspPPI	RGGWCCY	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	1444
PsyI	GACNNNGTC	1 cut(s)	1535
RsaI	GTAC	6 cut(s)	45, 425, 504, 517, 694, 923
RsaNI	GTAC	6 cut(s)	44, 424, 503, 516, 693, 922
RseI	CAYNNNNRTG	4 cut(s)	115, 861, 1344, 1557
SaqAI	TTAA	7 cut(s)	107, 461, 1047, 1275, 1350, 1478, 1622
SatI	GCNGC	3 cut(s)	601, 831, 1302
Sau3AI	GATC	5 cut(s)	261, 442, 464, 1228, 1561
Sau96I	GGNCC	4 cut(s)	225, 297, 476, 838
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	3 cut(s)	146, 301, 1509
SduI	GDGCHC	2 cut(s)	291, 357
SfaNI	GCATC	2 cut(s)	1104, 1272
SfcI	CTRYAG	3 cut(s)	452, 1015, 1440
SfuI	TTCGAA	1 cut(s)	183
SgrAI	CRCCGGYG	1 cut(s)	283
SinI	GGWCC	3 cut(s)	297, 476, 838
SmiMI	CAYNNNNRTG	4 cut(s)	115, 861, 1344, 1557
SmlI	CTYRAG	3 cut(s)	229, 949, 1205
SmoI	CTYRAG	3 cut(s)	229, 949, 1205
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	2 cut(s)	89, 281
SspMI	CTAG	2 cut(s)	1382, 1700
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	144, 299, 1507
StyI	CCWWGG	1 cut(s)	841
TaaI	ACNGT	9 cut(s)	18, 35, 128, 160, 326, 502, 985, 1468, 1709
TaiI	ACGT	2 cut(s)	494, 1416
TaqI	TCGA	5 cut(s)	150, 183, 357, 1249, 1823
TatI	WGTACW	3 cut(s)	43, 515, 921
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	7 cut(s)	107, 461, 1047, 1275, 1350, 1478, 1622
Tru9I	TTAA	7 cut(s)	107, 461, 1047, 1275, 1350, 1478, 1622
TscAI	CASTG	2 cut(s)	808, 1714
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	3 cut(s)	600, 830, 1301
Tsp45I	GTSAC	1 cut(s)	790
TspGWI	ACGGA	1 cut(s)	1754
TspRI	CASTG	2 cut(s)	808, 1714
Tth111I	GACNNNGTC	1 cut(s)	1535
VneI	GTGCAC	1 cut(s)	287
VpaK11BI	GGWCC	3 cut(s)	297, 476, 838
VspI	ATTAAT	1 cut(s)	1478
XapI	RAATTY	4 cut(s)	94, 1157, 1268, 1361
XbaI	TCTAGA	1 cut(s)	1381
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1515
XspI	CTAG	2 cut(s)	1382, 1700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.