deadenylation-dependent decapping of nuclear-transcribed mRNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G14080 |
| fragaria_vesca | FvH4_1g09010 |
| malus_domestica | MD02G1095300.v1.1 MD15G1220100.v1.1 |
| prunus_persica | Prupe.7G195800_v2.0.a1 |
| pyrus_communis | pycom02g07540 pycom15g19520 |
| rosa_chinensis | RchiOBHm_Chr2g0095431 |
| rosa_roxburghii | Rroxscaffold_2G00146380 |
| rosa_rugosa | Rorug02G0050900 |
| rosa_samantha | Rh2BG100400 Rh2DG099900 |
| rosa_wichuraiana | Rw2G007490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 88 |
| AcuI | CTGAAG | 1 cut(s) | 312 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AgsI | TTSAA | 1 cut(s) | 146 |
| AluBI | AGCT | 5 cut(s) | 51, 67, 97, 244, 265 |
| AluI | AGCT | 5 cut(s) | 51, 67, 97, 244, 265 |
| AoxI | GGCC | 1 cut(s) | 88 |
| AspLEI | GCGC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 1 cut(s) | 185 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 270, 303 |
| BanII | GRGCYC | 1 cut(s) | 313 |
| BbsI | GAAGAC | 1 cut(s) | 27 |
| BccI | CCATC | 1 cut(s) | 80 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BfaI | CTAG | 1 cut(s) | 284 |
| BfmI | CTRYAG | 1 cut(s) | 333 |
| BmiI | GGNNCC | 1 cut(s) | 349 |
| BmsI | GCATC | 1 cut(s) | 319 |
| BpiI | GAAGAC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 1 cut(s) | 214 |
| BseDI | CCNNGG | 1 cut(s) | 214 |
| BseGI | GGATG | 2 cut(s) | 189, 334 |
| BseMII | CTCAG | 1 cut(s) | 326 |
| BseRI | GAGGAG | 1 cut(s) | 275 |
| BshFI | GGCC | 1 cut(s) | 90 |
| BsnI | GGCC | 1 cut(s) | 90 |
| Bsp1286I | GDGCHC | 1 cut(s) | 313 |
| Bsp143I | GATC | 2 cut(s) | 121, 175 |
| BspANI | GGCC | 1 cut(s) | 90 |
| BspCNI | CTCAG | 1 cut(s) | 325 |
| BspLI | GGNNCC | 1 cut(s) | 349 |
| BssECI | CCNNGG | 1 cut(s) | 214 |
| BssMI | GATC | 2 cut(s) | 121, 175 |
| Bst4CI | ACNGT | 2 cut(s) | 114, 185 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 49, 154 |
| BstDEI | CTNAG | 1 cut(s) | 312 |
| BstDSI | CCRYGG | 1 cut(s) | 214 |
| BstF5I | GGATG | 2 cut(s) | 189, 334 |
| BstHHI | GCGC | 1 cut(s) | 17 |
| BstKTI | GATC | 2 cut(s) | 124, 178 |
| BstMBI | GATC | 2 cut(s) | 121, 175 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 317 |
| BstNSI | RCATGY | 1 cut(s) | 156 |
| BstSFI | CTRYAG | 1 cut(s) | 333 |
| BstV2I | GAAGAC | 1 cut(s) | 27 |
| BsuRI | GGCC | 1 cut(s) | 90 |
| BtgI | CCRYGG | 1 cut(s) | 214 |
| BtsCI | GGATG | 2 cut(s) | 189, 334 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 49, 154 |
| CfoI | GCGC | 1 cut(s) | 17 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 25, 60 |
| CviAII | CATG | 2 cut(s) | 153, 352 |
| CviJI | RGCY | 9 cut(s) | 11, 51, 67, 90, 97, 244, 265, 311, 348 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 51, 67, 90, 97, 244, 265, 311, 348 |
| CviQI | GTAC | 1 cut(s) | 287 |
| DdeI | CTNAG | 1 cut(s) | 312 |
| DpnI | GATC | 2 cut(s) | 123, 177 |
| DpnII | GATC | 2 cut(s) | 121, 175 |
| DraI | TTTAAA | 1 cut(s) | 342 |
| EaeI | YGGCCR | 1 cut(s) | 88 |
| Eco24I | GRGCYC | 1 cut(s) | 313 |
| Eco57I | CTGAAG | 1 cut(s) | 312 |
| EcoT38I | GRGCYC | 1 cut(s) | 313 |
| FaeI | CATG | 2 cut(s) | 156, 355 |
| FaiI | YATR | 5 cut(s) | 154, 207, 276, 278, 353 |
| FatI | CATG | 2 cut(s) | 152, 351 |
| FauNDI | CATATG | 1 cut(s) | 276 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| FokI | GGATG | 2 cut(s) | 176, 341 |
| FriOI | GRGCYC | 1 cut(s) | 313 |
| FspBI | CTAG | 1 cut(s) | 284 |
| GlaI | GCGC | 1 cut(s) | 16 |
| HaeIII | GGCC | 1 cut(s) | 90 |
| HhaI | GCGC | 1 cut(s) | 17 |
| Hin1II | CATG | 2 cut(s) | 156, 355 |
| Hin6I | GCGC | 1 cut(s) | 15 |
| HinP1I | GCGC | 1 cut(s) | 15 |
| HindIII | AAGCTT | 1 cut(s) | 65 |
| HinfI | GANTC | 1 cut(s) | 280 |
| HphI | GGTGA | 1 cut(s) | 185 |
| Hpy188I | TCNGA | 1 cut(s) | 315 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 143 |
| HpyAV | CCTTC | 1 cut(s) | 140 |
| HpyCH4III | ACNGT | 2 cut(s) | 114, 185 |
| HpyCH4V | TGCA | 2 cut(s) | 47, 152 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 317 |
| HpyF3I | CTNAG | 1 cut(s) | 312 |
| Hsp92II | CATG | 2 cut(s) | 156, 355 |
| HspAI | GCGC | 1 cut(s) | 15 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 121, 175 |
| LmnI | GCTCC | 2 cut(s) | 262, 353 |
| LpnPI | CCDG | 2 cut(s) | 230, 303 |
| LweI | GCATC | 1 cut(s) | 319 |
| MaeI | CTAG | 1 cut(s) | 284 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MalI | GATC | 2 cut(s) | 123, 177 |
| MboI | GATC | 2 cut(s) | 121, 175 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MhlI | GDGCHC | 1 cut(s) | 313 |
| MluCI | AATT | 2 cut(s) | 234, 248 |
| MlyI | GAGTC | 1 cut(s) | 274 |
| MnlI | CCTC | 4 cut(s) | 253, 279, 318, 383 |
| MseI | TTAA | 3 cut(s) | 233, 341, 385 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 317 |
| NdeI | CATATG | 1 cut(s) | 276 |
| NdeII | GATC | 2 cut(s) | 121, 175 |
| NlaIII | CATG | 2 cut(s) | 156, 355 |
| NlaIV | GGNNCC | 1 cut(s) | 349 |
| NmuCI | GTSAC | 1 cut(s) | 185 |
| NspI | RCATGY | 1 cut(s) | 156 |
| PaeI | GCATGC | 1 cut(s) | 156 |
| PleI | GAGTC | 1 cut(s) | 274 |
| PpsI | GAGTC | 1 cut(s) | 274 |
| PspN4I | GGNNCC | 1 cut(s) | 349 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| SaqAI | TTAA | 3 cut(s) | 233, 341, 385 |
| Sau3AI | GATC | 2 cut(s) | 121, 175 |
| SchI | GAGTC | 1 cut(s) | 274 |
| SduI | GDGCHC | 1 cut(s) | 313 |
| SetI | ASST | 8 cut(s) | 53, 69, 99, 151, 202, 246, 267, 292 |
| SfaNI | GCATC | 1 cut(s) | 319 |
| SfcI | CTRYAG | 1 cut(s) | 333 |
| SphI | GCATGC | 1 cut(s) | 156 |
| Sse9I | AATT | 2 cut(s) | 234, 248 |
| SspMI | CTAG | 1 cut(s) | 284 |
| TaaI | ACNGT | 2 cut(s) | 114, 185 |
| TaqI | TCGA | 1 cut(s) | 375 |
| TasI | AATT | 2 cut(s) | 234, 248 |
| Tru1I | TTAA | 3 cut(s) | 233, 341, 385 |
| Tru9I | TTAA | 3 cut(s) | 233, 341, 385 |
| TseFI | GTSAC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 1 cut(s) | 185 |
| TspGWI | ACGGA | 1 cut(s) | 203 |
| XceI | RCATGY | 1 cut(s) | 156 |
| XspI | CTAG | 1 cut(s) | 284 |