Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017087

Physical Location & Seq

Genomic Coordinates Forward (+)

8023843 .. 8026378

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTCGTGGGCAGGCCCAGAAGACTCTCTCCTCTCCACTTCTCTGGCGAGCTATCTTGACAAAAAGCTTCTTGTCTTATTGCGAGATGGGCGAAAGCTCTTGGGGTTACTACGGTCTTTTGACCAGTTTGCTAATGTTGTGCTTGAAGGTGCATGTGAACGAGTTATTGTCGGTGATCTTTATTGTGACATCCCATTAGGTCTGTATGTAATCCGTGGGGAGAATGTAGTCTTAATTGGAGAACTGGTATATTGCATTATCTTTCAATCTATCAGACTTGTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000339 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009892 GO:0009987 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034518 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

4.92

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	14 - 80	5.8e-20	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14080
fragaria_vesca	FvH4_1g09010
malus_domestica	MD02G1095300.v1.1 MD15G1220100.v1.1
prunus_persica	Prupe.7G195800_v2.0.a1
pyrus_communis	pycom02g07540 pycom15g19520
rosa_chinensis	RchiOBHm_Chr2g0095431
rosa_roxburghii	Rroxscaffold_2G00146380
rosa_rugosa	Rorug02G0050900
rosa_samantha	Rh2BG100400 Rh2DG099900
rosa_wichuraiana	Rw2G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	2 cut(s)	146, 266
AluBI	AGCT	3 cut(s)	51, 67, 97
AluI	AGCT	3 cut(s)	51, 67, 97
AoxI	GGCC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	27
BccI	CCATC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bse1I	ACTGG	2 cut(s)	124, 249
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	124, 249
BseRI	GAGGAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	124, 249
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	13, 49
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	13, 49
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	15, 51, 67, 97
CviKI_1	RGCY	4 cut(s)	15, 51, 67, 97
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
FaeI	CATG	1 cut(s)	156
FaiI	YATR	4 cut(s)	154, 207, 250, 286
FatI	CATG	1 cut(s)	152
FokI	GGATG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	156
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	152, 255
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	29, 30, 137, 230
MaeIII	GTNAC	2 cut(s)	105, 185
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	41
MseI	TTAA	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	156
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	156
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	17
SetI	ASST	5 cut(s)	53, 69, 99, 151, 202
Sse9I	AATT	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	114
TasI	AATT	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.