Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017087

Physical Location & Seq

Genomic Coordinates Forward (+)

8367586 .. 8370059

Gene Structure 2474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCGTGGGCAGGCCCAGAAGACTCTCTCCTCTCCACTTCTCTGGCGAGCTATCTTGACAGGAGAGAAAAGCTTCTTGTCTTATTGCGAGATGGGCGAAAGCTCTTGGGGTTACTACGGTCTTTTGACCAGTTTGCTAATGTTGTGCTTGAAGGTGCATGTGAACGAGTTATTGTCGGTGATCTTTATTGTGACATCCCATTAGGTCTGTATGTAATCCGTGGGGAGAATGTAGTCTTAATTGGAGAACTGGAATTGAATAAAGAGGAGCTCCCCCCGCATATGACTCTGGTACCCGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAGGGATGCTTCAGACTTAAAAGGCTCCATGAGAAAAAGAATGGAGTTCCTTGATTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000339 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009892 GO:0009987 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034518 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

5.0

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	22 - 82	3e-17	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14080
fragaria_vesca	FvH4_1g09010
malus_domestica	MD02G1095300.v1.1 MD15G1220100.v1.1
prunus_persica	Prupe.7G195800_v2.0.a1
pyrus_communis	pycom02g07540 pycom15g19520
rosa_chinensis	RchiOBHm_Chr2g0095431
rosa_roxburghii	Rroxscaffold_2G00146380
rosa_rugosa	Rorug02G0050900
rosa_samantha	Rh2BG100400 Rh2DG099900
rosa_wichuraiana	Rw2G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	152, 259
AluBI	AGCT	4 cut(s)	51, 73, 103, 271
AluI	AGCT	4 cut(s)	51, 73, 103, 271
Alw21I	GWGCWC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	72
Asp718I	GGTACC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	191
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	273, 319
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	294, 355
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	130, 255
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	2 cut(s)	195, 340
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	130, 255
BseRI	GAGGAG	2 cut(s)	20, 281
BshFI	GGCC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	273, 319
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	294, 355
BspT107I	GGYRCC	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	130, 255
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	13, 49
BstDEI	CTNAG	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	195, 340
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 277, 323
BstNSI	RCATGY	1 cut(s)	162
BstV2I	GAAGAC	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	195, 340
Cac8I	GCNNGC	2 cut(s)	13, 49
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	2 cut(s)	159, 358
CviJI	RGCY	7 cut(s)	15, 51, 73, 103, 271, 317, 354
CviKI_1	RGCY	7 cut(s)	15, 51, 73, 103, 271, 317, 354
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	273, 319
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	273, 319
FaeI	CATG	2 cut(s)	162, 361
FaiI	YATR	5 cut(s)	160, 213, 282, 284, 359
FatI	CATG	2 cut(s)	158, 357
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	282
FokI	GGATG	2 cut(s)	182, 347
FriOI	GRGCYC	2 cut(s)	273, 319
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	162, 361
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	23, 286
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	321, 343
Hpy188III	TCNNGA	1 cut(s)	56
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 277, 323
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	162, 361
KpnI	GGTACC	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	3 cut(s)	268, 276, 359
LpnPI	CCDG	6 cut(s)	29, 30, 46, 143, 236, 275
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	111, 191
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	2 cut(s)	273, 319
MluCI	AATT	2 cut(s)	240, 254
MlyI	GAGTC	2 cut(s)	17, 280
MnlI	CCTC	3 cut(s)	41, 259, 324
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	3 cut(s)	239, 347, 391
MwoI	GCNNNNNNNGC	3 cut(s)	94, 277, 323
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	162, 361
NlaIV	GGNNCC	2 cut(s)	294, 355
NmuCI	GTSAC	1 cut(s)	191
NspI	RCATGY	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	72
PleI	GAGTC	2 cut(s)	17, 280
PpsI	GAGTC	2 cut(s)	17, 280
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	294, 355
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	239, 347, 391
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	17, 280
SduI	GDGCHC	2 cut(s)	273, 319
SetI	ASST	6 cut(s)	53, 75, 105, 157, 208, 273
SfaNI	GCATC	1 cut(s)	325
Sse9I	AATT	2 cut(s)	240, 254
SsiI	CCGC	1 cut(s)	278
SstI	GAGCTC	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	387
TasI	AATT	2 cut(s)	240, 254
Tru1I	TTAA	3 cut(s)	239, 347, 391
Tru9I	TTAA	3 cut(s)	239, 347, 391
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	162
XmnI	GAANNNNTTC	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.