Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0017087

Physical Location & Seq

Genomic Coordinates Forward (+)

5271482 .. 5273209

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07540.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTGGGCTGGGCCAGAAGATACTTTCCTTTCCACTTCTCTTGCTACCTATCTTGACAAAAAGCTTCTTGTCTTGCTGCGAGATGGACGAAAGCTGTTGGGATTGCTACGGTCTTTTGATCAGTTTGCTAATGTTGTTCTTGAAGGCGCATGTGAAAGAGTAATTGTGGGTGACCTTTATTGTGACATCCCATTAGGTCTATATGTAATCCGTGGGGAGAATGTCGTCTTAATTGGAGAGCTGGAATTGGATAAGGAGGAGCTTCCCCCTCATATGACTTTGGTACCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAGGGATGCGACAGATTTAAAAGGCTCCATGAGAAAAAGAATGGAGTTCCTCGATTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000339 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009892 GO:0009987 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034518 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

129

Amino Acids

14.48

Weight (kDa)

4.87

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14080
fragaria_vesca	FvH4_1g09010
malus_domestica	MD02G1095300.v1.1 MD15G1220100.v1.1
prunus_persica	Prupe.7G195800_v2.0.a1
pyrus_communis	pycom02g07540 pycom15g19520
rosa_chinensis	RchiOBHm_Chr2g0095431
rosa_roxburghii	Rroxscaffold_2G00146380
rosa_rugosa	Rorug02G0050900
rosa_samantha	Rh2BG100400 Rh2DG099900
rosa_wichuraiana	Rw2G007490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AfaI	GTAC	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	4 cut(s)	67, 97, 244, 265
AluI	AGCT	4 cut(s)	67, 97, 244, 265
AoxI	GGCC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	79
Asp718I	GGTACC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	185
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	121
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	288, 349
BmsI	GCATC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	2 cut(s)	189, 334
BseMII	CTCAG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	286
BsnI	GGCC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	288, 349
BspT107I	GGYRCC	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	214
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	189, 334
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	156
BstPI	GGTNACC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	189, 334
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	287
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	2 cut(s)	153, 352
CviJI	RGCY	8 cut(s)	11, 16, 67, 97, 244, 265, 311, 348
CviKI_1	RGCY	8 cut(s)	11, 16, 67, 97, 244, 265, 311, 348
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraI	TTTAAA	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	313
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	2 cut(s)	156, 355
FaiI	YATR	6 cut(s)	154, 205, 207, 276, 278, 353
FatI	CATG	2 cut(s)	152, 351
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	176, 341
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	80
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	156, 355
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	65
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	56, 143
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	114
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	156, 355
HspAI	GCGC	1 cut(s)	150
KpnI	GGTACC	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	262, 353
LpnPI	CCDG	3 cut(s)	30, 230, 303
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	173, 185
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	165, 234, 248
MnlI	CCTC	4 cut(s)	253, 282, 318, 383
MseI	TTAA	3 cut(s)	233, 341, 385
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	156, 355
NlaIV	GGNNCC	2 cut(s)	288, 349
NmuCI	GTSAC	2 cut(s)	173, 185
NspI	RCATGY	1 cut(s)	156
PkrI	GCNGC	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	288, 349
PspPI	GGNCC	1 cut(s)	14
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	233, 341, 385
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	7 cut(s)	53, 69, 99, 180, 202, 246, 267
SfaNI	GCATC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	165, 234, 248
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	1 cut(s)	375
TasI	AATT	3 cut(s)	165, 234, 248
Tru1I	TTAA	3 cut(s)	233, 341, 385
Tru9I	TTAA	3 cut(s)	233, 341, 385
TseFI	GTSAC	2 cut(s)	173, 185
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	2 cut(s)	173, 185
TspGWI	ACGGA	1 cut(s)	203
XceI	RCATGY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.