Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011858

Physical Location & Seq

Genomic Coordinates Forward (+)

4667308 .. 4669194

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G14080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTGGGCTGGTCCTGAAGAAATTTATCTTTCAACATCACTCGCTAGTTATCTCGATAGAAAACTACTTGTGCTTCTTAGAGATGGTAGAAAGCTAATGGGAACACTCCGTTCCTTTGATCAATTCGCCAATGCGGTTCTAGAAGGTGCGTGTGAGAGGGTAATTGTTGGTGAACAATACTGTGACATTCCTTTAGGCCTCTATGTAATCCGTGGAGAGAATGTTGTTTTGATTGGTGAGCTGGACACGGAGAGAGAAGAGCTTCCTCCACATATGATTCGCGTCTCAGAGGCAGAGATTAAAAGGGCACAAAAGGTGGAGAGGGAAGCGAGTGAGCTGAGAGGAACAATGAGGAAGAGAATGGAGTTTCTTGACTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000339 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009892 GO:0009987 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034518 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

5.05

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	14 - 80	1.1e-19	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca	FvH4_6g35080
malus_domestica	MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica	Prupe.3G038200_v2.0.a1
pyrus_communis	pycom09g09730 pycom17g15780
rosa_chinensis	RchiOBHm_Chr2g0146261
rosa_laevigata	RLG00000020190
rosa_multiflora	Rmu_sc0002054.1_g000018
rosa_roxburghii	Rroxscaffold_2G00100200
rosa_rugosa	Rorug02G0394000
rosa_samantha	Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana	Rw2G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	36
AluBI	AGCT	4 cut(s)	97, 244, 265, 340
AluI	AGCT	4 cut(s)	97, 244, 265, 340
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	2 cut(s)	185, 251
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	313
BccI	CCATC	1 cut(s)	80
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	48, 143
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
BseDI	CCNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	303, 332
BseSI	GKGCMC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	302, 333
BspFNI	CGCG	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	255, 353
BstDEI	CTNAG	3 cut(s)	80, 289, 341
BstDSI	CCRYGG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	313
BstUI	CGCG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	274
CviJI	RGCY	6 cut(s)	11, 97, 201, 244, 265, 340
CviKI_1	RGCY	6 cut(s)	11, 97, 201, 244, 265, 340
DdeI	CTNAG	3 cut(s)	80, 289, 341
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	255, 353
EarI	CTCTTC	2 cut(s)	255, 353
Eco147I	AGGCCT	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	39
Esp3I	CGTCTC	1 cut(s)	292
FaiI	YATR	3 cut(s)	207, 276, 278
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	121
FspBI	CTAG	2 cut(s)	48, 143
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	274
HinfI	GANTC	1 cut(s)	280
HphI	GGTGA	2 cut(s)	185, 251
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	17, 56, 143, 374
Hpy8I	GTNNAC	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	185
HpyF3I	CTNAG	3 cut(s)	80, 289, 341
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	255
LpnPI	CCDG	2 cut(s)	30, 230
MaeI	CTAG	2 cut(s)	48, 143
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	3 cut(s)	32, 272, 370
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	24, 125, 165
MnlI	CCTC	7 cut(s)	153, 212, 279, 286, 318, 338, 348
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	2 cut(s)	303, 385
MvnI	CGCG	1 cut(s)	285
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	185
PceI	AGGCCT	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	14
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	303, 385
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	6 cut(s)	99, 151, 246, 267, 321, 342
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	3 cut(s)	24, 125, 165
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	48, 143
StuI	AGGCCT	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	24, 125, 165
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	303, 385
Tru9I	TTAA	2 cut(s)	303, 385
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	3 cut(s)	101, 203, 266
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	2 cut(s)	48, 143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.