Prupe.3G038200_v2.0.a1

U6 snRNA-associated Sm-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0011858
Physical Location & Seq
Reverse (-)
2753508 .. 2756304
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G038200.1

Sequence Viewer

Length: 387 bp
ATGTCTTGGGCGGGCCCCGAAGATGTCTACCTCTCCACTTCTCTTGCCAGCTATCTTGACAAAAAACTTCTTGTGCTGCTTAGAGATGGTCGGAAGCTTTTGGGGATTCTTCGTTCTTTTGATCAATTTGCCAATGCTGTTCTCGAGGGTGCATGTGAGCGAGTCATTGTCGGTGAACTTTACTGTGACATCCCTTTAGGTCTTTATGTAATCCGTGGGGAGAATGTTGTTCTAATTGGCGAGCTGGATTCGGAGAGAGAGGAACTTCCACCACACATGACTCGTGTTTCGGCTGCAGAAATCAAAAGTGCACAGAAAGCAGAACGAGAAGCGTCTGATCTTAAAGGTACCATGAGAAAAAGAATGGAGTTCCTTGACATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
LSM

Protein Analysis

129

Amino Acids

14.38

Weight (kDa)

4.99

Isoelectric Point (pI)

29.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca FvH4_6g35080
malus_domestica MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica Prupe.3G038200_v2.0.a1
pyrus_communis pycom09g09730 pycom17g15780
rosa_chinensis RchiOBHm_Chr2g0146261
rosa_laevigata RLG00000020190
rosa_multiflora Rmu_sc0002054.1_g000018
rosa_roxburghii Rroxscaffold_2G00100200
rosa_rugosa Rorug02G0394000
rosa_samantha Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana Rw2G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 11
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 97, 129
AluBI AGCT 3 cut(s) 51, 97, 244
AluI AGCT 3 cut(s) 51, 97, 244
Alw21I GWGCWC 1 cut(s) 313
Alw44I GTGCAC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 13
ApaI GGGCCC 1 cut(s) 17
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 76, 293
ArsI GACNNNNNNTTYG 2 cut(s) 271, 303
Asp718I GGTACC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 13, 14
AsuHPI GGTGA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 2 cut(s) 17, 313
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 17
BauI CACGAG 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 63, 280
BccI CCATC 1 cut(s) 80
BclI TGATCA 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 77, 294
BlsI GCNGC 2 cut(s) 78, 295
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 2 cut(s) 13, 14
BmiI GGNNCC 3 cut(s) 15, 16, 349
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 379
BseSI GKGCMC 2 cut(s) 17, 313
BseXI GCAGC 2 cut(s) 63, 280
BshFI GGCC 1 cut(s) 15
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 379
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 143
Bsp120I GGGCCC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 17, 313
Bsp143I GATC 2 cut(s) 121, 337
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 15
BspLI GGNNCC 3 cut(s) 15, 16, 349
BspMAI CTGCAG 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 121, 337
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 13, 49, 242
BstDEI CTNAG 1 cut(s) 80
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 2 cut(s) 124, 340
BstMBI GATC 2 cut(s) 121, 337
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 2 cut(s) 17, 313
BstV1I GCAGC 2 cut(s) 63, 280
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 3 cut(s) 13, 49, 242
Cfr13I GGNCC 2 cut(s) 13, 14
CseI GACGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 4 cut(s) 153, 277, 352, 379
CviJI RGCY 5 cut(s) 15, 51, 97, 244, 293
CviKI_1 RGCY 5 cut(s) 15, 51, 97, 244, 293
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 123, 339
DpnII GATC 2 cut(s) 121, 337
Eco24I GRGCYC 1 cut(s) 17
Eco88I CYCGRG 1 cut(s) 143
EcoO109I RGGNCCY 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 17
FaeI CATG 4 cut(s) 156, 280, 355, 382
FaiI YATR 5 cut(s) 154, 207, 278, 353, 380
FatI CATG 4 cut(s) 152, 276, 351, 378
FauI CCCGC 1 cut(s) 4
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 77, 294
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 77, 294
GluI GCNGC 2 cut(s) 77, 294
HaeIII GGCC 1 cut(s) 15
HgaI GACGC 1 cut(s) 321
Hin1II CATG 4 cut(s) 156, 280, 355, 382
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 4 cut(s) 106, 162, 248, 280
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 3 cut(s) 28, 176, 311
Hpy188I TCNGA 3 cut(s) 93, 253, 337
Hpy188III TCNNGA 2 cut(s) 56, 143
Hpy8I GTNNAC 3 cut(s) 28, 176, 311
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 152, 296, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 1 cut(s) 80
Hsp92II CATG 4 cut(s) 156, 280, 355, 382
KpnI GGTACC 1 cut(s) 351
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 2 cut(s) 121, 337
LpnPI CCDG 2 cut(s) 61, 230
Lsp1109I GCAGC 2 cut(s) 63, 280
MaeIII GTNAC 1 cut(s) 185
MalI GATC 2 cut(s) 123, 339
MboI GATC 2 cut(s) 121, 337
MboII GAAGA 2 cut(s) 32, 101
MhlI GDGCHC 2 cut(s) 17, 313
MluCI AATT 2 cut(s) 125, 234
MlyI GAGTC 2 cut(s) 171, 274
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 3 cut(s) 41, 139, 253
MseI TTAA 2 cut(s) 342, 385
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 2 cut(s) 121, 337
NlaIII CATG 4 cut(s) 156, 280, 355, 382
NlaIV GGNNCC 3 cut(s) 15, 16, 349
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 143
PfeI GAWTC 2 cut(s) 106, 248
PkrI GCNGC 2 cut(s) 78, 295
PleI GAGTC 2 cut(s) 170, 274
PpsI GAGTC 2 cut(s) 170, 274
PspN4I GGNNCC 3 cut(s) 15, 16, 349
PspOMI GGGCCC 1 cut(s) 13
PspPI GGNCC 2 cut(s) 13, 14
PstI CTGCAG 1 cut(s) 298
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 342, 385
SatI GCNGC 2 cut(s) 77, 294
Sau3AI GATC 2 cut(s) 121, 337
Sau96I GGNCC 2 cut(s) 13, 14
SchI GAGTC 2 cut(s) 171, 274
SduI GDGCHC 2 cut(s) 17, 313
SetI ASST 6 cut(s) 33, 53, 99, 202, 246, 349
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 2 cut(s) 125, 234
SsiI CCGC 1 cut(s) 11
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 125, 234
TfiI GAWTC 2 cut(s) 106, 248
Tru1I TTAA 2 cut(s) 342, 385
Tru9I TTAA 2 cut(s) 342, 385
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 76, 293
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 203
VneI GTGCAC 1 cut(s) 309
XceI RCATGY 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.