Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011858

Physical Location & Seq

Genomic Coordinates Reverse (-)

7838274 .. 7840157

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTTGGGCAGGCCCAGAAGATGTCTACCTTTCCACATCTCTTGCAAGCTACCTTGACAAGAAGCTTCTTGTGCTGCTCCGTGATGGTCGAAAACTTTTGGGGATACTTCGGTCTTTTGATCAATTCGCCAATGCCGTTCTCGAGGGTGCATGTGAGAGAGTCATTGTTGGGGATCTTTACTGTGACATCCCCTTGGGTCTTTACGTCATCCGTGGGGAGAATGTTGTTCTAATTGGCGAGCTGGATTCGGAAAGGGAGGAACTTCCACCACACATGACTCGTGTTTCAGCTGCAGAAATTAAAAGGGCACAGAAAGCAGAAAGAGAAGCTTCTGATCTTAAAGGTACAATGAGAAAAAGAATGGAGTTCCTTGATATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

5.12

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca	FvH4_6g35080
malus_domestica	MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica	Prupe.3G038200_v2.0.a1
pyrus_communis	pycom09g09730 pycom17g15780
rosa_chinensis	RchiOBHm_Chr2g0146261
rosa_laevigata	RLG00000020190
rosa_multiflora	Rmu_sc0002054.1_g000018
rosa_roxburghii	Rroxscaffold_2G00100200
rosa_rugosa	Rorug02G0394000
rosa_samantha	Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana	Rw2G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	379
AluBI	AGCT	5 cut(s)	51, 67, 244, 293, 332
AluI	AGCT	5 cut(s)	51, 67, 244, 293, 332
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	2 cut(s)	76, 293
AspS9I	GGNCC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	313
BaeI	ACNNNNGTAYC	2 cut(s)	98, 131
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	63, 280
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	121
BfmI	CTRYAG	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	99
BisI	GCNGC	2 cut(s)	77, 294
BlsI	GCNGC	2 cut(s)	78, 295
BmeT110I	CYCGRG	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	195, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
BseDI	CCNNGG	2 cut(s)	195, 214
BseGI	GGATG	2 cut(s)	189, 210
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	63, 280
BshFI	GGCC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	379
BsnI	GGCC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	121, 175, 337
BspANI	GGCC	1 cut(s)	15
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	183
BssECI	CCNNGG	2 cut(s)	195, 214
BssMI	GATC	3 cut(s)	121, 175, 337
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	13, 49, 242
BstDSI	CCRYGG	1 cut(s)	214
BstF5I	GGATG	2 cut(s)	189, 210
BstKTI	GATC	3 cut(s)	124, 178, 340
BstMBI	GATC	3 cut(s)	121, 175, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 317
BstNSI	RCATGY	1 cut(s)	156
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	2 cut(s)	63, 280
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	189, 210
Cac8I	GCNNGC	3 cut(s)	13, 49, 242
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	2 cut(s)	153, 277
CviJI	RGCY	6 cut(s)	15, 51, 67, 244, 293, 332
CviKI_1	RGCY	6 cut(s)	15, 51, 67, 244, 293, 332
CviQI	GTAC	1 cut(s)	348
DpnI	GATC	3 cut(s)	123, 177, 339
DpnII	GATC	3 cut(s)	121, 175, 337
Eco130I	CCWWGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	156, 280
FaiI	YATR	3 cut(s)	154, 278, 380
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FatI	CATG	2 cut(s)	152, 276
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	77, 294
FokI	GGATG	2 cut(s)	176, 197
Fsp4HI	GCNGC	2 cut(s)	77, 294
GluI	GCNGC	2 cut(s)	77, 294
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	156, 280
HindIII	AAGCTT	2 cut(s)	65, 330
HinfI	GANTC	3 cut(s)	162, 248, 280
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	253, 337
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	47, 152, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 317
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	156, 280
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 175, 337
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	2 cut(s)	30, 230
Lsp1109I	GCAGC	2 cut(s)	63, 280
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	123, 177, 339
MboI	GATC	3 cut(s)	121, 175, 337
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	3 cut(s)	125, 234, 300
MlyI	GAGTC	2 cut(s)	171, 274
MnlI	CCTC	2 cut(s)	139, 253
MseI	TTAA	3 cut(s)	303, 342, 385
MspA1I	CMGCKG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	73, 317
NdeII	GATC	3 cut(s)	121, 175, 337
NlaIII	CATG	2 cut(s)	156, 280
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	156
PaeR7I	CTCGAG	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	78, 295
PleI	GAGTC	2 cut(s)	170, 274
PpsI	GAGTC	2 cut(s)	170, 274
PspPI	GGNCC	1 cut(s)	14
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	303, 342, 385
SatI	GCNGC	2 cut(s)	77, 294
Sau3AI	GATC	3 cut(s)	121, 175, 337
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	171, 274
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	9 cut(s)	33, 53, 57, 69, 210, 246, 295, 334, 349
SfcI	CTRYAG	1 cut(s)	294
Sfr274I	CTCGAG	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	3 cut(s)	125, 234, 300
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	2 cut(s)	91, 144
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	3 cut(s)	125, 234, 300
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	303, 342, 385
Tru9I	TTAA	3 cut(s)	303, 342, 385
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	76, 293
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	2 cut(s)	71, 203
XceI	RCATGY	1 cut(s)	156
XhoI	CTCGAG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.