Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011858

Physical Location & Seq

Genomic Coordinates Forward (+)

6608115 .. 6609369

Gene Structure 1255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G19120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCTTGGGCTGCTCCTGATGATATCTTCTTCTCCACTTCTCTTGCTGCTTACCTAGACAAGAAACTTCTTGTGTTGCTTCGTGATGGTAGGAAACTGATGGGTCTACTTCGGTCCTTTGATCAATTTGCTAATGCTGTTTTAGAAGAAGCTTATGAAAGAGTCATTGTGGGTGATCTCTACTGTGATATTCCCTTAGGTCTATACATTATCCGTGGAGAAAATGTTGTCTTGATTGGTGAATTGGACGTGGAAAAAGAAGAGCTTCCAGCTCATATGGTTCAGGTTCCAGAAGCAGAGATAAAAAGGGCTCAGAAAGCAGAGAAGGAAGAAATGCTTTTAAAGGGCACAATGCGGAAAAGAATGGAGTTCCTTGATCTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000290 GO:0000339 GO:0000932 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005845 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009651 GO:0009892 GO:0009987 GO:0010035 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034518 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042538 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0120114 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1990726 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

LSM

Protein Analysis

128

Amino Acids

14.66

Weight (kDa)

4.81

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	14 - 80	5.2e-19	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca	FvH4_6g35080
malus_domestica	MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica	Prupe.3G038200_v2.0.a1
pyrus_communis	pycom09g09730 pycom17g15780
rosa_chinensis	RchiOBHm_Chr2g0146261
rosa_laevigata	RLG00000020190
rosa_multiflora	Rmu_sc0002054.1_g000018
rosa_roxburghii	Rroxscaffold_2G00100200
rosa_rugosa	Rorug02G0394000
rosa_samantha	Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana	Rw2G036740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	106
AciI	CCGC	1 cut(s)	355
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	3 cut(s)	152, 265, 272
AluI	AGCT	3 cut(s)	152, 265, 272
ApeKI	GCWGC	2 cut(s)	11, 47
Asp700I	GAANNNNTTC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	185, 251
AvaII	GGWCC	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	80, 94
BclI	TGATCA	1 cut(s)	121
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	12, 48
BlsI	GCNGC	2 cut(s)	13, 49
Bme18I	GGWCC	1 cut(s)	114
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse21I	CCTNAGG	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	214
BseMII	CTCAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	313, 350
Bsp143I	GATC	3 cut(s)	121, 175, 376
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	3 cut(s)	121, 175, 376
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	196, 312
BstDSI	CCRYGG	1 cut(s)	214
BstKTI	GATC	3 cut(s)	124, 178, 379
BstMBI	GATC	3 cut(s)	121, 175, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	196
BtgI	CCRYGG	1 cut(s)	214
BtrI	CACGTC	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	114
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviJI	RGCY	5 cut(s)	11, 152, 265, 272, 311
CviKI_1	RGCY	5 cut(s)	11, 152, 265, 272, 311
DdeI	CTNAG	2 cut(s)	196, 312
DpnI	GATC	3 cut(s)	123, 177, 378
DpnII	GATC	3 cut(s)	121, 175, 376
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	313
FaiI	YATR	4 cut(s)	156, 205, 276, 278
FalI	AAGNNNNNCTT	4 cut(s)	249, 281, 321, 353
FauNDI	CATATG	1 cut(s)	276
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	12, 48
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	2 cut(s)	12, 48
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	12, 48
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	1 cut(s)	162
HphI	GGTGA	2 cut(s)	185, 251
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	5 cut(s)	17, 83, 232, 290, 380
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	196, 312
HpySE526I	ACGT	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 175, 376
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	30, 269, 282, 303
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	249
MalI	GATC	3 cut(s)	123, 177, 378
MboI	GATC	3 cut(s)	121, 175, 376
MboII	GAAGA	5 cut(s)	19, 22, 158, 272, 341
MhlI	GDGCHC	2 cut(s)	313, 350
MluCI	AATT	2 cut(s)	125, 242
MlyI	GAGTC	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	341
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	3 cut(s)	121, 175, 376
NlaIV	GGNNCC	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	255
PdmI	GAANNNNTTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	13, 49
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	2 cut(s)	12, 48
Sau3AI	GATC	3 cut(s)	121, 175, 376
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	313, 350
SetI	ASST	7 cut(s)	57, 154, 202, 252, 267, 274, 288
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	125, 242
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	381
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	2 cut(s)	125, 242
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TseI	GCWGC	2 cut(s)	11, 47
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.