MD09G1179100.v1.1

U6 snRNA-associated Sm-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0011858
Physical Location & Seq
Reverse (-)
15303760 .. 15306605
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1179100.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTCTTGGGCAGGCCCAGAAGATGTCTACCTTTCCACTTCTCTTGCTAGCTACCTTGACAAGAAGCTTCTTGTGCTGCTCCGTGATGGTCGAAAACTTTTGGGGATACTTCGGTCTTTTGATCAATTCGCCAATGCCGTTCTCGAGGGTGCATGTGAGAGAGTCATTGTTGGGGATCTTTACTGTGACATCCCCTTGGGTCTTTACGTCATCCGTGGGGAGAATGTTGTTCTAATTGGCGAGCTGGATTCAGAAAGGGAGGAACTTCCACCACACATGACTCGCGTTTCAGCTGCAGAAATTAAAAGGGCACAGAAAGCAGAAAGAGAAGCTTCTGATCTTAAAGGTACAATGAGAAAAAGAATGGAGTTCCTGGATATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
LSM

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

5.12

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 14 - 80 2.1e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca FvH4_6g35080
malus_domestica MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica Prupe.3G038200_v2.0.a1
pyrus_communis pycom09g09730 pycom17g15780
rosa_chinensis RchiOBHm_Chr2g0146261
rosa_laevigata RLG00000020190
rosa_multiflora Rmu_sc0002054.1_g000018
rosa_roxburghii Rroxscaffold_2G00100200
rosa_rugosa Rorug02G0394000
rosa_samantha Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana Rw2G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AccII CGCG 1 cut(s) 285
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 379
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 5 cut(s) 51, 67, 244, 293, 332
AluI AGCT 5 cut(s) 51, 67, 244, 293, 332
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 1 cut(s) 143
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 76, 293
AspS9I GGNCC 1 cut(s) 14
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 313
BaeI ACNNNNGTAYC 2 cut(s) 98, 131
BbvI GCAGC 2 cut(s) 63, 280
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 1 cut(s) 374
BciVI GTATCC 1 cut(s) 99
BclI TGATCA 1 cut(s) 121
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 2 cut(s) 77, 294
BlsI GCNGC 2 cut(s) 78, 295
Bme1390I CCNGG 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 374
BmtI GCTAGC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 195, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 2 cut(s) 195, 214
BseGI GGATG 2 cut(s) 189, 210
BseLI CCNNNNNNNGG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 63, 280
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 379
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 121, 175, 337
BspANI GGCC 1 cut(s) 15
BspFNI CGCG 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 195, 214
BssMI GATC 3 cut(s) 121, 175, 337
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 13, 49, 242
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 189, 210
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 3 cut(s) 124, 178, 340
BstMBI GATC 3 cut(s) 121, 175, 337
BstMWI GCNNNNNNNGC 2 cut(s) 73, 317
BstNI CCWGG 1 cut(s) 374
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 63, 280
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 2 cut(s) 189, 210
Cac8I GCNNGC 3 cut(s) 13, 49, 242
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 25, 60
CviAII CATG 2 cut(s) 153, 277
CviJI RGCY 6 cut(s) 15, 51, 67, 244, 293, 332
CviKI_1 RGCY 6 cut(s) 15, 51, 67, 244, 293, 332
CviQI GTAC 1 cut(s) 348
DpnI GATC 3 cut(s) 123, 177, 339
DpnII GATC 3 cut(s) 121, 175, 337
Eco130I CCWWGG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 156, 280
FaiI YATR 3 cut(s) 154, 278, 380
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 2 cut(s) 152, 276
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 77, 294
FokI GGATG 2 cut(s) 176, 197
Fsp4HI GCNGC 2 cut(s) 77, 294
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 77, 294
HaeIII GGCC 1 cut(s) 15
Hin1II CATG 2 cut(s) 156, 280
HindIII AAGCTT 2 cut(s) 65, 330
HinfI GANTC 3 cut(s) 162, 248, 280
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 253, 337
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 152, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 317
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 156, 280
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 175, 337
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 30, 230, 359
Lsp1109I GCAGC 2 cut(s) 63, 280
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 123, 177, 339
MboI GATC 3 cut(s) 121, 175, 337
MboII GAAGA 1 cut(s) 32
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 3 cut(s) 125, 234, 300
MlyI GAGTC 2 cut(s) 171, 274
MnlI CCTC 2 cut(s) 139, 253
MseI TTAA 3 cut(s) 303, 342, 385
MspA1I CMGCKG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 374
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 73, 317
NdeII GATC 3 cut(s) 121, 175, 337
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 156, 280
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 156
PaeR7I CTCGAG 1 cut(s) 143
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 1 cut(s) 248
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 2 cut(s) 78, 295
PleI GAGTC 2 cut(s) 170, 274
PpsI GAGTC 2 cut(s) 170, 274
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 303, 342, 385
SatI GCNGC 2 cut(s) 77, 294
Sau3AI GATC 3 cut(s) 121, 175, 337
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 171, 274
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 313
SetI ASST 9 cut(s) 33, 53, 57, 69, 210, 246, 295, 334, 349
SfcI CTRYAG 1 cut(s) 294
Sfr274I CTCGAG 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 3 cut(s) 125, 234, 300
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 372
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 91, 144
TaqII GACCGA 1 cut(s) 102
TasI AATT 3 cut(s) 125, 234, 300
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 303, 342, 385
Tru9I TTAA 3 cut(s) 303, 342, 385
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 2 cut(s) 76, 293
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 2 cut(s) 71, 203
XceI RCATGY 1 cut(s) 156
XhoI CTCGAG 1 cut(s) 143
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.