MD17G1164700.v1.1

U6 snRNA-associated Sm-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011858
Physical Location & Seq
Reverse (-)
16327515 .. 16333483
5969 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1164700.v1.1.491

Sequence Viewer

Length: 387 bp
ATGTCTTGGGCAGGCCCAGAAGATGTCTACCTTTCCACTTCTCTGGCCAGCTATCTTGACAAGAAACTTCTTGTGCTGCTCCGAGATGGTCGAAAACTTTTGGGGATACTTCGATCGTTTGATCAATTCGCCAATGCTGTTCTTGAGGGTGCTTGTGAGAGAGTCATTGTTGGCGATCTTTACTGTGATATCCCTTTGGGTCTGTACGTAATCCGTGGGGAGAATGTTGTTCTAATCGGCGAGCTGGATTCAGAGAGGGAGGAACTTCCACCGCACATGACTCGTGTTTCAGCTGCAGAAATTAAAAGGGCACAGAAAGCAGAAAGGGAAGCTTCTGATCTTAAAGGTACAATGAGAAAAAGAATGGAGTTCCTTGATATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
LSM

Protein Analysis

129

Amino Acids

14.43

Weight (kDa)

5.12

Isoelectric Point (pI)

32.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 14 - 80 2.1e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca FvH4_6g35080
malus_domestica MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica Prupe.3G038200_v2.0.a1
pyrus_communis pycom09g09730 pycom17g15780
rosa_chinensis RchiOBHm_Chr2g0146261
rosa_laevigata RLG00000020190
rosa_multiflora Rmu_sc0002054.1_g000018
rosa_roxburghii Rroxscaffold_2G00100200
rosa_rugosa Rorug02G0394000
rosa_samantha Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana Rw2G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 2 cut(s) 206, 349
AfiI CCNNNNNNNGG 1 cut(s) 379
AluBI AGCT 4 cut(s) 51, 244, 293, 332
AluI AGCT 4 cut(s) 51, 244, 293, 332
AoxI GGCC 2 cut(s) 13, 45
ApeKI GCWGC 2 cut(s) 76, 293
AspS9I GGNCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 313
BalI TGGCCA 1 cut(s) 47
BauI CACGAG 1 cut(s) 282
BbvI GCAGC 2 cut(s) 63, 280
BccI CCATC 1 cut(s) 80
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciVI GTATCC 1 cut(s) 99
BclI TGATCA 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 99
BisI GCNGC 2 cut(s) 77, 294
BlsI GCNGC 2 cut(s) 78, 295
BmgT120I GGNCC 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 379
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 63, 280
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 2 cut(s) 15, 47
BsiEI CGRYCG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 379
BsnI GGCC 2 cut(s) 15, 47
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 4 cut(s) 113, 121, 175, 337
BspACI CCGC 1 cut(s) 272
BspANI GGCC 2 cut(s) 15, 47
BspMAI CTGCAG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 4 cut(s) 113, 121, 175, 337
BssSI CACGAG 1 cut(s) 282
Bst2BI CACGAG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 13, 49, 242
BstDSI CCRYGG 1 cut(s) 214
BstKTI GATC 4 cut(s) 116, 124, 178, 340
BstMBI GATC 4 cut(s) 113, 121, 175, 337
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 313
BstSNI TACGTA 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 63, 280
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuI GTATCC 1 cut(s) 99
BsuRI GGCC 2 cut(s) 15, 47
BtgI CCRYGG 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 13, 49, 242
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 205, 348
CviAII CATG 1 cut(s) 277
CviJI RGCY 6 cut(s) 15, 47, 51, 244, 293, 332
CviKI_1 RGCY 6 cut(s) 15, 47, 51, 244, 293, 332
CviQI GTAC 2 cut(s) 205, 348
DpnI GATC 4 cut(s) 115, 123, 177, 339
DpnII GATC 4 cut(s) 113, 121, 175, 337
EaeI YGGCCR 1 cut(s) 45
Eco105I TACGTA 1 cut(s) 208
Eco32I GATATC 1 cut(s) 190
EcoRV GATATC 1 cut(s) 190
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 278, 380
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 77, 294
Fsp4HI GCNGC 2 cut(s) 77, 294
GluI GCNGC 2 cut(s) 77, 294
HaeIII GGCC 2 cut(s) 15, 47
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 3 cut(s) 162, 248, 280
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 83, 253, 337
Hpy188III TCNNGA 2 cut(s) 56, 143
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 4 cut(s) 113, 121, 175, 337
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 4 cut(s) 29, 30, 61, 230
Lsp1109I GCAGC 2 cut(s) 63, 280
MaeII ACGT 1 cut(s) 207
MalI GATC 4 cut(s) 115, 123, 177, 339
MboI GATC 4 cut(s) 113, 121, 175, 337
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 313
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 2 cut(s) 125, 300
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 2 cut(s) 171, 274
MnlI CCTC 3 cut(s) 139, 249, 253
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 3 cut(s) 303, 342, 385
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 4 cut(s) 113, 121, 175, 337
NlaIII CATG 1 cut(s) 280
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 2 cut(s) 78, 295
Ple19I CGATCG 1 cut(s) 116
PleI GAGTC 2 cut(s) 170, 274
PpsI GAGTC 2 cut(s) 170, 274
Ppu21I YACGTR 1 cut(s) 208
PspPI GGNCC 1 cut(s) 14
PstI CTGCAG 1 cut(s) 298
PvuI CGATCG 1 cut(s) 116
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 2 cut(s) 206, 349
RsaNI GTAC 2 cut(s) 205, 348
SaqAI TTAA 3 cut(s) 303, 342, 385
SatI GCNGC 2 cut(s) 77, 294
Sau3AI GATC 4 cut(s) 113, 121, 175, 337
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 2 cut(s) 171, 274
SduI GDGCHC 1 cut(s) 313
SetI ASST 7 cut(s) 33, 53, 210, 246, 295, 334, 349
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 208
Sse9I AATT 2 cut(s) 125, 300
SsiI CCGC 1 cut(s) 272
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 210
TaqI TCGA 2 cut(s) 91, 112
TasI AATT 2 cut(s) 125, 300
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 303, 342, 385
Tru9I TTAA 3 cut(s) 303, 342, 385
TseI GCWGC 2 cut(s) 76, 293
TspGWI ACGGA 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.