FvH4_6g35080

U6 snRNA-associated Sm-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011858
Physical Location & Seq
Forward (+)
27726834 .. 27728526
1693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35080.t1

Sequence Viewer

Length: 387 bp
ATGTCTTGGGCCGGCCCAGAAGATGTTTACCTCTCTACTTCTCTTGCGAGCTATCTTGACAAGAAAATTCTTGTGCTGCTCCGAGATGGTCGCAAGCTTTTAGGAATACTCCGTTCCTTTGATCAATTTGCCAATGCTGTTCTTGAGGGTGCTTGTGAAAGGGTCATTGTTGGCGAACTTTATTGTGATCTCCCTTTGGGTCTTTACGTAATTCGTGGGGAGAATGTTGTTCTAATTGGTGAACTGGACGCGGAGAGGGAGGAACTTCCCCCACATATGACCCGTGTTTCACCTGCAGAAATTAAAAGGGCACAGAAAGCAGAAAGAGAAGCTTCTGATCTCAAAGGCACCATGAGAAAAAGAATGGAGTTTCTTGACATGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
LSM

Protein Analysis

129

Amino Acids

14.46

Weight (kDa)

5.13

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 14 - 80 1.4e-19 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011858)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19120 AT3G14080 AT3G14080 AT3G14080
fragaria_vesca FvH4_6g35080
malus_domestica MD09G1179100.v1.1 MD17G1164700.v1.1
prunus_persica Prupe.3G038200_v2.0.a1
pyrus_communis pycom09g09730 pycom17g15780
rosa_chinensis RchiOBHm_Chr2g0146261
rosa_laevigata RLG00000020190
rosa_multiflora Rmu_sc0002054.1_g000018
rosa_roxburghii Rroxscaffold_2G00100200
rosa_rugosa Rorug02G0394000
rosa_samantha Rh2BG462400 Rh2CG437000 Rh2DG471600
rosa_wichuraiana Rw2G036740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 301
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 251
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 66
AluBI AGCT 3 cut(s) 51, 97, 332
AluI AGCT 3 cut(s) 51, 97, 332
AoxI GGCC 2 cut(s) 9, 13
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 9, 14
AsuHPI GGTGA 2 cut(s) 251, 282
BaeGI GKGCMC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 80
BclI TGATCA 1 cut(s) 121
BfmI CTRYAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 9, 14
BmiI GGNNCC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 164
BsaAI YACGTR 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 251
BshFI GGCC 2 cut(s) 11, 15
BshNI GGYRCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 11, 15
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 121, 187, 337
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 11, 15
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 298
BspMI ACCTGC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 11
BssMI GATC 3 cut(s) 121, 187, 337
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 13, 49, 95
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 3 cut(s) 124, 190, 340
BstMBI GATC 3 cut(s) 121, 187, 337
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 313
BstSNI TACGTA 1 cut(s) 208
BstUI CGCG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 2 cut(s) 11, 15
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 3 cut(s) 13, 49, 95
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 9, 14
CseI GACGC 1 cut(s) 257
CviAII CATG 2 cut(s) 352, 379
CviJI RGCY 5 cut(s) 11, 15, 51, 97, 332
CviKI_1 RGCY 5 cut(s) 11, 15, 51, 97, 332
DpnI GATC 3 cut(s) 123, 189, 339
DpnII GATC 3 cut(s) 121, 187, 337
Eco105I TACGTA 1 cut(s) 208
FaeI CATG 2 cut(s) 355, 382
FaiI YATR 4 cut(s) 276, 278, 353, 380
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FatI CATG 2 cut(s) 351, 378
FauNDI CATATG 1 cut(s) 276
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 77
FseI GGCCGGCC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
HaeIII GGCC 2 cut(s) 11, 15
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 257
Hin1II CATG 2 cut(s) 355, 382
HindIII AAGCTT 2 cut(s) 95, 330
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 251, 282
Hpy166II GTNNAC 2 cut(s) 28, 242
Hpy188I TCNGA 2 cut(s) 83, 337
Hpy188III TCNNGA 3 cut(s) 56, 143, 374
Hpy8I GTNNAC 2 cut(s) 28, 242
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 355, 382
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 3 cut(s) 121, 187, 337
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 4 cut(s) 25, 30, 230, 306
Lsp1109I GCAGC 1 cut(s) 63
MaeII ACGT 1 cut(s) 207
MalI GATC 3 cut(s) 123, 189, 339
MboI GATC 3 cut(s) 121, 187, 337
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 66, 125, 210, 234, 300
MnlI CCTC 4 cut(s) 41, 139, 249, 253
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 1 cut(s) 303
MspI CCGG 1 cut(s) 12
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 1 cut(s) 317
NaeI GCCGGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 276
NdeII GATC 3 cut(s) 121, 187, 337
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 355, 382
NlaIV GGNNCC 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 301
PdiI GCCGGC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 78
Ppu21I YACGTR 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 9, 14
PstI CTGCAG 1 cut(s) 298
RigI GGCCGGCC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 121, 187, 337
Sau96I GGNCC 2 cut(s) 9, 14
SduI GDGCHC 1 cut(s) 313
SetI ASST 6 cut(s) 33, 53, 99, 210, 295, 334
SfcI CTRYAG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SnaBI TACGTA 1 cut(s) 208
Sse9I AATT 5 cut(s) 66, 125, 210, 234, 300
SsiI CCGC 1 cut(s) 251
TaiI ACGT 1 cut(s) 210
TasI AATT 5 cut(s) 66, 125, 210, 234, 300
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseI GCWGC 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 101
XapI RAATTY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.