Prupe.7G197800_v2.0.a1

lipid catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0021221
Physical Location & Seq
Reverse (-)
18617136 .. 18618636
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G197800.1

Sequence Viewer

Length: 816 bp
ATGGAGAAAACAAAATCATCCCTTCATGGTCACGCTAACGGAGGTCTCACCACTGTTCTTTCTATTGATGGAGGCGGAATAAGAGGGATTATTCCAGGAGTTATGCTTGCATTCCTAGAGTCTTTGCTTCAGAAGATAGATGGTGATCATGTCAGGCTTGTAGATTATCTTGATTGGGTTGTAGGGATGAGCACAGGTGGCCTTATGGCGTCCATGCTTACTACCCCAAATAAAAATAATCGTCCTTTATATGCTGCTAAAGATATCGTCCCCTTTTATCGCCAACACTGCCTTAAGATTTTCCCCCAACCCAGATACGTATACAGCTCTCACGTCGGCAAAATCATATATTACTTGAAATGTTTAGTAGGGCCCAAATATAATAAGAAGTATTTACGTAAGCTGTTGAAGGAAACACTAGGAGACAAACATTTGCAAGACATGTTGACTAACATTGCAATCCCAACTACTGACATGTTGGCTGATCGGAAAAGATCGTTCGGCTCCACTGGTGGATCTTCTTATGAGAGTAAATACATGGAATTGGAAATGAATGATGATACACTAAGTGGAACATTGGCTTCTGTGGATATTGCCACAGAAGAAAGCTTGAATGATCTTGTAAAAGTTGGAGAGGCATTGTTGAAGAAACCGGTTTCGAGATTGAATTTTGGTATCGGTAAACTCGAGCCTGTTTATCCTGAGGTTACAAATGAAGAGGCTCTCGTGAGGTACAAATTTGCTCTTTTATTCTCATTATTAAGTTGTGTAAATTCAATAAATTATCATACTGATTACTTTTGTTTTGTCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Patatin

Protein Analysis

272

Amino Acids

30.24

Weight (kDa)

8.5

Isoelectric Point (pI)

31.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 3 cut(s) 667, 737, 772
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 209
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 1 cut(s) 734
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 2 cut(s) 441, 474
AgeI ACCGGT 1 cut(s) 652
AgsI TTSAA 6 cut(s) 358, 409, 613, 646, 667, 777
AjiI CACGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 3 cut(s) 327, 403, 609
AluI AGCT 3 cut(s) 327, 403, 609
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 2 cut(s) 50, 417
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 686
AoxI GGCC 2 cut(s) 199, 371
ApaI GGGCCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 3 cut(s) 667, 737, 772
AsiGI ACCGGT 1 cut(s) 652
AspS9I GGNCC 2 cut(s) 371, 372
AsuHPI GGTGA 2 cut(s) 40, 155
AvaI CYCGRG 1 cut(s) 686
AxyI CCTNAGG 1 cut(s) 702
BaeGI GKGCMC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 241
BccI CCATC 2 cut(s) 62, 134
BciT130I CCWGG 1 cut(s) 96
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 50, 417
BfaI CTAG 2 cut(s) 116, 419
BfrI CTTAAG 1 cut(s) 293
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 686
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 371, 372
BmiI GGNNCC 2 cut(s) 373, 505
BmrFI CCNGG 1 cut(s) 96
BsaAI YACGTR 2 cut(s) 319, 398
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 652
Bse1I ACTGG 1 cut(s) 514
Bse21I CCTNAGG 1 cut(s) 702
Bse3DI GCAATG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 17, 192
BseJI GATNNNNATC 1 cut(s) 144
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 1 cut(s) 693
BseNI ACTGG 1 cut(s) 514
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 201, 373
BshTI ACCGGT 1 cut(s) 652
BsiHKAI GWGCWC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 686
BsiSI CCGG 1 cut(s) 653
BslFI GGGAC 2 cut(s) 254, 794
BsmAI GTCTC 2 cut(s) 50, 417
BsmFI GGGAC 2 cut(s) 254, 794
BsmI GAATGC 1 cut(s) 110
BsnI GGCC 2 cut(s) 201, 373
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 686
Bsp120I GGGCCC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 194, 375
Bsp143I GATC 5 cut(s) 145, 484, 494, 515, 616
BspACI CCGC 1 cut(s) 75
BspANI GGCC 2 cut(s) 201, 373
BspCNI CTCAG 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 373, 505
BspPI GGATC 1 cut(s) 523
BspTI CTTAAG 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 652
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 652
BssMI GATC 5 cut(s) 145, 484, 494, 515, 616
BssNAI GTATAC 1 cut(s) 322
BssNI GRCGYC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 725
Bst1107I GTATAC 1 cut(s) 322
Bst2BI CACGAG 1 cut(s) 725
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 293
BstBAI YACGTR 2 cut(s) 319, 398
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 566, 702
BstF5I GGATG 2 cut(s) 17, 192
BstKTI GATC 5 cut(s) 148, 487, 497, 518, 619
BstMAI GTCTC 2 cut(s) 50, 417
BstMBI GATC 5 cut(s) 145, 484, 494, 515, 616
BstMWI GCNNNNNNNGC 2 cut(s) 198, 288
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 2 cut(s) 445, 478
BstSCI CCNGG 1 cut(s) 94
BstSLI GKGCMC 1 cut(s) 375
BstSNI TACGTA 2 cut(s) 319, 398
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BstZ17I GTATAC 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 702
BsuRI GGCC 2 cut(s) 201, 373
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 2 cut(s) 17, 192
BtsI GCAGTG 1 cut(s) 286
BtsIMutI CAGTG 3 cut(s) 51, 286, 507
Cac8I GCNNGC 1 cut(s) 108
Cfr10I RCCGGY 1 cut(s) 652
Cfr13I GGNCC 2 cut(s) 371, 372
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 733
CspAI ACCGGT 1 cut(s) 652
CviAII CATG 6 cut(s) 26, 149, 214, 442, 475, 538
CviQI GTAC 1 cut(s) 733
DdeI CTNAG 2 cut(s) 566, 702
DpnI GATC 5 cut(s) 147, 486, 496, 517, 618
DpnII GATC 5 cut(s) 145, 484, 494, 515, 616
DraIII CACNNNGTG 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 90
Eco105I TACGTA 2 cut(s) 319, 398
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 50
Eco32I GATATC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 94
EcoRV GATATC 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 375
FaeI CATG 6 cut(s) 29, 152, 217, 445, 478, 541
FaqI GGGAC 2 cut(s) 254, 794
FatI CATG 6 cut(s) 25, 148, 213, 441, 474, 537
FbaI TGATCA 1 cut(s) 145
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 4, 199
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 116, 419
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 2 cut(s) 201, 373
HapII CCGG 1 cut(s) 653
HgaI GACGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 209
Hin1II CATG 6 cut(s) 29, 152, 217, 445, 478, 541
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 1 cut(s) 119
HpaII CCGG 1 cut(s) 653
HphI GGTGA 2 cut(s) 40, 155
Hpy166II GTNNAC 3 cut(s) 322, 447, 683
Hpy188I TCNGA 2 cut(s) 132, 489
Hpy188III TCNNGA 4 cut(s) 170, 660, 701, 727
Hpy8I GTNNAC 3 cut(s) 322, 447, 683
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 32, 403
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4IV ACGT 3 cut(s) 318, 333, 397
HpyCH4V TGCA 3 cut(s) 110, 436, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 288
HpyF3I CTNAG 2 cut(s) 566, 702
HpySE526I ACGT 3 cut(s) 318, 333, 397
Hsp92I GRCGYC 1 cut(s) 209
Hsp92II CATG 6 cut(s) 29, 152, 217, 445, 478, 541
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 145, 484, 494, 515, 616
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 9 cut(s) 81, 108, 139, 180, 325, 495, 666, 705, 714
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 2 cut(s) 116, 419
MaeII ACGT 3 cut(s) 318, 333, 397
MaeIII GTNAC 2 cut(s) 29, 706
MalI GATC 5 cut(s) 147, 486, 496, 517, 618
MboI GATC 5 cut(s) 145, 484, 494, 515, 616
MboII GAAGA 5 cut(s) 145, 510, 614, 658, 728
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 2 cut(s) 194, 375
MluCI AATT 5 cut(s) 542, 667, 737, 772, 781
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 7 cut(s) 35, 65, 77, 628, 697, 712, 723
MseI TTAA 3 cut(s) 294, 761, 814
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 1 cut(s) 653
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 2 cut(s) 198, 288
NdeII GATC 5 cut(s) 145, 484, 494, 515, 616
NlaIII CATG 6 cut(s) 29, 152, 217, 445, 478, 541
NlaIV GGNNCC 2 cut(s) 373, 505
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 2 cut(s) 445, 478
PaeR7I CTCGAG 1 cut(s) 686
PciI ACATGT 2 cut(s) 441, 474
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 94
PinAI ACCGGT 1 cut(s) 652
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Ppu21I YACGTR 2 cut(s) 319, 398
PscI ACATGT 2 cut(s) 441, 474
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 373, 505
PspOMI GGGCCC 1 cut(s) 371
PspPI GGNCC 2 cut(s) 371, 372
PspXI VCTCGAGB 1 cut(s) 686
PsuI RGATCY 1 cut(s) 515
RsaI GTAC 1 cut(s) 734
RsaNI GTAC 1 cut(s) 733
SaqAI TTAA 3 cut(s) 294, 761, 814
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 5 cut(s) 145, 484, 494, 515, 616
Sau96I GGNCC 2 cut(s) 371, 372
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 194, 375
Sfr274I CTCGAG 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 686
SmlI CTYRAG 2 cut(s) 293, 686
SmoI CTYRAG 2 cut(s) 293, 686
SnaBI TACGTA 2 cut(s) 319, 398
Sse9I AATT 5 cut(s) 542, 667, 737, 772, 781
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 116, 419
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 55
TaiI ACGT 3 cut(s) 321, 336, 400
TaqI TCGA 2 cut(s) 659, 687
TasI AATT 5 cut(s) 542, 667, 737, 772, 781
Tru1I TTAA 3 cut(s) 294, 761, 814
Tru9I TTAA 3 cut(s) 294, 761, 814
TscAI CASTG 3 cut(s) 58, 293, 514
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 3 cut(s) 14, 566, 729
TspGWI ACGGA 1 cut(s) 54
TspRI CASTG 3 cut(s) 58, 293, 514
Vha464I CTTAAG 1 cut(s) 293
XapI RAATTY 3 cut(s) 667, 737, 772
XceI RCATGY 2 cut(s) 445, 478
XhoI CTCGAG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 2 cut(s) 116, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.