Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0013016

Physical Location & Seq

Genomic Coordinates Forward (+)

18764489 .. 18767245

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGCCACTGAAATGGGTTTTGCATTGGCAGCCCAATGCAGGGACGACAGTAAACAGCCAAATCATCAACGAAGTAACGCAGTGCGTTGAGAGCATCAATGGCGTTAAGGAAGGCAGGTGGAAAGCCACTATCACCTTCTACAAACCCATGATTCGAGAGCAGGCTTTAGCAGGGGACTTCCCGCGTGATTTTCTGGGGATTGCGCTGCCGGAACAACCGAACAAGTACTACCTGATAATCCGATTGCAGCGCATAGTTCTTGAGGCTGATTCATCTATTCAGATGATTATGGAGAAATTACAGTCTTACAAATCGAGGGTCTCTCTTAATTTTGAGGGATTTCAATATCAACTTGGGGACTTCCAATTAAGAGTGGGGAAAGTTCTTCCTACTCATTCTGAAAATTTGAGAGGAATAGTTATGGAGGTGGAGTACCTTCCCATTTCTTCGATGGAAAAAGCGAGGCAAGTCATGGAAGACTTTATGGATATATGGCAACAGGCTTTGTCAAAGAGATCATTACCAGGGCACTTTATGCACATGGAACCAAACTTTGCTGAGTATGGCCTTGCAGACCAGTATACTTCACAACATACTGCTGTCCAGTATGCTACTGTTATGGCTCAACTAATTGCAACAGTGCAGGCAGTGCAAGCAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0031047 GO:0031050 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031974 GO:0031981 GO:0032101 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043900 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0097659 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med20

Protein Analysis

222

Amino Acids

25.43

Weight (kDa)

6.52

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28230 AT2G28230 AT4G09070
fragaria_vesca	FvH4_1g08420
malus_domestica	MD15G1215700.v1.1 MD15G1215800.v1.1
prunus_persica	Prupe.7G201200_v2.0.a1
pyrus_communis	pycom02g07100 pycom15g19140
rosa_chinensis	RchiOBHm_Chr2g0094521
rosa_laevigata	RLG00000016498
rosa_multiflora	Rmu_sc0004359.1_g000043
rosa_roxburghii	Rroxscaffold_2G00147100
rosa_rugosa	Rorug02G0044400
rosa_samantha	Rh2AG092700 Rh2BG092900 Rh2CG095400 Rh2DG091800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	105
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	1 cut(s)	184
AciI	CCGC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	2 cut(s)	227, 434
AfiI	CCNNNNNNNGG	2 cut(s)	38, 39
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	3 cut(s)	28, 205, 247
ApoI	RAATTY	1 cut(s)	403
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspLEI	GCGC	2 cut(s)	205, 252
AsuHPI	GGTGA	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	40, 192, 259
BccI	CCATC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	664
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	3 cut(s)	29, 206, 248
BlsI	GCNGC	3 cut(s)	30, 207, 249
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BpuEI	CTTGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 39
Bse1I	ACTGG	2 cut(s)	577, 604
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	524
BseLI	CCNNNNNNNGG	2 cut(s)	38, 39
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	2 cut(s)	577, 604
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	40, 192, 259
BsgI	GTGCAG	1 cut(s)	662
Bsh1236I	CGCG	1 cut(s)	184
BshFI	GGCC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	3 cut(s)	55, 188, 371
BslI	CCNNNNNNNGG	2 cut(s)	38, 39
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	3 cut(s)	55, 188, 371
BsnI	GGCC	1 cut(s)	567
Bso31I	GGTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	515
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	325
BsrI	ACTGG	2 cut(s)	577, 604
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	1 cut(s)	515
BssNAI	GTATAC	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	4 cut(s)	49, 303, 616, 640
BstAPI	GCANNNNNTGC	2 cut(s)	535, 649
BstC8I	GCNNGC	3 cut(s)	162, 645, 654
BstDEI	CTNAG	1 cut(s)	558
BstFNI	CGCG	1 cut(s)	184
BstHHI	GCGC	2 cut(s)	205, 252
BstKTI	GATC	1 cut(s)	518
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	515
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 90, 99, 535, 649, 653
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstSLI	GKGCMC	1 cut(s)	531
BstUI	CGCG	1 cut(s)	184
BstV1I	GCAGC	3 cut(s)	40, 192, 259
BstV2I	GAAGAC	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	12
BstZ17I	GTATAC	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	567
BtsI	GCAGTG	2 cut(s)	86, 654
BtsIMutI	CAGTG	4 cut(s)	5, 86, 645, 654
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	3 cut(s)	162, 645, 654
CfoI	GCGC	2 cut(s)	205, 252
Csp6I	GTAC	2 cut(s)	226, 433
CviAII	CATG	3 cut(s)	148, 472, 541
CviJI	RGCY	8 cut(s)	31, 57, 125, 164, 266, 503, 567, 623
CviKI_1	RGCY	8 cut(s)	31, 57, 125, 164, 266, 503, 567, 623
CviQI	GTAC	2 cut(s)	226, 433
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	1 cut(s)	517
DpnII	GATC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	523
FaeI	CATG	3 cut(s)	151, 475, 544
FaqI	GGGAC	3 cut(s)	55, 188, 371
FatI	CATG	3 cut(s)	147, 471, 540
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	3 cut(s)	29, 206, 248
Fsp4HI	GCNGC	3 cut(s)	29, 206, 248
FspBI	CTAG	1 cut(s)	664
GlaI	GCGC	2 cut(s)	204, 251
GluI	GCNGC	3 cut(s)	29, 206, 248
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	2 cut(s)	205, 252
Hin1II	CATG	3 cut(s)	151, 475, 544
Hin6I	GCGC	2 cut(s)	203, 250
HinP1I	GCGC	2 cut(s)	203, 250
HinfI	GANTC	2 cut(s)	151, 269
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	52, 582
Hpy188I	TCNGA	3 cut(s)	242, 282, 400
Hpy188III	TCNNGA	2 cut(s)	155, 260
Hpy8I	GTNNAC	2 cut(s)	52, 582
HpyAV	CCTTC	3 cut(s)	104, 145, 446
HpyCH4III	ACNGT	4 cut(s)	49, 303, 616, 640
HpyCH4V	TGCA	8 cut(s)	22, 38, 247, 538, 572, 635, 643, 652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 90, 99, 535, 649, 653
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	151, 475, 544
HspAI	GCGC	2 cut(s)	203, 250
Kzo9I	GATC	1 cut(s)	515
Lsp1109I	GCAGC	3 cut(s)	40, 192, 259
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	664
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	517
MboI	GATC	1 cut(s)	515
MboII	GAAGA	3 cut(s)	377, 438, 488
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	5 cut(s)	296, 328, 365, 403, 630
MnlI	CCTC	6 cut(s)	256, 309, 328, 404, 418, 456
MseI	TTAA	3 cut(s)	105, 327, 368
MslI	CAYNNNNRTG	1 cut(s)	10
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	184
MwoI	GCNNNNNNNGC	6 cut(s)	28, 90, 99, 535, 649, 653
NdeII	GATC	1 cut(s)	515
NlaIII	CATG	3 cut(s)	151, 475, 544
NlaIV	GGNNCC	1 cut(s)	546
PaqCI	CACCTGC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	151, 269
PkrI	GCNGC	3 cut(s)	30, 207, 249
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	546
PsrI	GAACNNNNNNTAC	2 cut(s)	212, 244
RsaI	GTAC	2 cut(s)	227, 434
RsaNI	GTAC	2 cut(s)	226, 433
RseI	CAYNNNNRTG	1 cut(s)	10
SaqAI	TTAA	3 cut(s)	105, 327, 368
SatI	GCNGC	3 cut(s)	29, 206, 248
Sau3AI	GATC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	5 cut(s)	119, 137, 234, 429, 438
SfaNI	GCATC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	10
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	296, 328, 365, 403, 630
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	664
StyD4I	CCNGG	1 cut(s)	523
TaaI	ACNGT	4 cut(s)	49, 303, 616, 640
TaqI	TCGA	3 cut(s)	154, 314, 449
TasI	AATT	5 cut(s)	296, 328, 365, 403, 630
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	151, 269
Tru1I	TTAA	3 cut(s)	105, 327, 368
Tru9I	TTAA	3 cut(s)	105, 327, 368
TscAI	CASTG	4 cut(s)	12, 86, 645, 654
TseI	GCWGC	3 cut(s)	28, 205, 247
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	12, 86, 645, 654
XapI	RAATTY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	581
XspI	CTAG	1 cut(s)	664
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.