Prupe.7G230200_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016725
Physical Location & Seq
Forward (+)
20222211 .. 20224692
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G230200.1

Sequence Viewer

Length: 600 bp
ATGGCGAGAACAGGCAATAAGAACATACAAGCCAAGCTGGTACTTCTTGGGGACATGGGAACTGGGAAGACAAGCTTGGTATTGAGATTTGTGACAGGAAAATTTTTGGAGTACCAGGAATCAACAATTGGAGCAGCTTTCTTCACTCAGGTTCTGTCACTAAATGAAGCTACCATCAAATTTGATATATGGGACACTGCGGGTCAGGAACGGTACCATAGCCTGGCTCCTATGTACTACCGTGGTGCCGCTGCAGCTGTTGTGGTGTATGATATCACAAGCATGGAATCATTTGTGAGAGCAAAAAAGTGGGTTCAAGAATTGCAAAGACAAGCAAATCCAACTCTAATAATGTTCTTGGCCGGTAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTGGGGTTTGAGGAAGGTGAGCAATATGCCAAGGAAAATGGCTTGGTTTTTCTTGAAACATCTGCCAAAACTGCACAGAATGTCAATGAGCTCTTTTATGAAATAGCAAAAAAGTTGGCTAAAGCTAGCCCTTCTCGTCCAACTGGGATAAAATTGCATAGCAGATCACAGCAAAACAGCAGGAGAATGTTTTGTTGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

200

Amino Acids

22.34

Weight (kDa)

9.39

Isoelectric Point (pI)

37.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04940 FvH4_1g04940 FvH4_1g04940 FvH4_1g04940
malus_domestica MD02G1048000.v1.1
prunus_persica Prupe.7G230200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090541 RchiOBHm_Chr2g0111381
rosa_laevigata RLG00000016121
rosa_multiflora Rmu_sc0004514.1_g000028
rosa_roxburghii Rroxscaffold_2G00151040
rosa_rugosa Rorug02G0008900 Rorug02G0009000
rosa_wichuraiana Rw2G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 213, 245
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 2 cut(s) 200, 249
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 101, 179
AfaI GTAC 4 cut(s) 42, 113, 215, 236
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 2 cut(s) 317, 452
AjnI CCWGG 2 cut(s) 114, 222
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 111, 143
AluBI AGCT 7 cut(s) 37, 75, 137, 170, 257, 487, 521
AluI AGCT 7 cut(s) 37, 75, 137, 170, 257, 487, 521
Alw21I GWGCWC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 134, 251, 254
ApoI RAATTY 2 cut(s) 101, 179
Asp718I GGTACC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 521
BanI GGYRCC 2 cut(s) 213, 245
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 3 cut(s) 146, 238, 266
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 116, 224
BfaI CTAG 1 cut(s) 522
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 4 cut(s) 135, 249, 252, 255
BlsI GCNGC 4 cut(s) 136, 250, 253, 256
Bme1390I CCNGG 2 cut(s) 116, 224
BmiI GGNNCC 3 cut(s) 215, 228, 247
BmrFI CCNGG 2 cut(s) 116, 224
BmrI ACTGGG 2 cut(s) 72, 549
BmtI GCTAGC 1 cut(s) 525
BmuI ACTGGG 2 cut(s) 72, 549
BpiI GAAGAC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 241, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 67, 544
BseBI CCWGG 2 cut(s) 116, 224
BseDI CCNNGG 2 cut(s) 241, 426
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 67, 544
BseXI GCAGC 3 cut(s) 146, 238, 266
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 362
BshNI GGYRCC 2 cut(s) 213, 245
BsiHKAI GWGCWC 1 cut(s) 489
BsiSI CCGG 1 cut(s) 363
BslFI GGGAC 2 cut(s) 65, 206
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 65, 206
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 1 cut(s) 560
BspACI CCGC 2 cut(s) 200, 249
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 215, 228, 247
BspMAI CTGCAG 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 525
BspT107I GGYRCC 2 cut(s) 213, 245
BsrFI RCCGGY 1 cut(s) 362
BsrI ACTGG 2 cut(s) 67, 544
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 241, 426
BssMI GATC 1 cut(s) 560
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 2 cut(s) 116, 224
Bst4CI ACNGT 2 cut(s) 213, 242
Bst6I CTCTTC 2 cut(s) 378, 383
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 1 cut(s) 563
BstMBI GATC 1 cut(s) 560
BstMWI GCNNNNNNNGC 2 cut(s) 254, 467
BstNI CCWGG 2 cut(s) 116, 224
BstSCI CCNGG 2 cut(s) 114, 222
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 146, 238, 266
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 523
CaiI CAGNNNCTG 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 362
Csp6I GTAC 4 cut(s) 41, 112, 214, 235
CviAII CATG 2 cut(s) 55, 283
CviQI GTAC 4 cut(s) 41, 112, 214, 235
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 562
DpnII GATC 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 2 cut(s) 378, 383
EarI CTCTTC 2 cut(s) 378, 383
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 489
Eco32I GATATC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 114, 222
EcoRV GATATC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 58, 286
FalI AAGNNNNNCTT 4 cut(s) 59, 91, 362, 394
FaqI GGGAC 2 cut(s) 65, 206
FatI CATG 2 cut(s) 54, 282
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 4 cut(s) 135, 249, 252, 255
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 4 cut(s) 135, 249, 252, 255
FspBI CTAG 1 cut(s) 522
GluI GCNGC 4 cut(s) 135, 249, 252, 255
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 363
Hin1II CATG 2 cut(s) 58, 286
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 2 cut(s) 119, 287
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 425
Hpy188III TCNNGA 4 cut(s) 206, 317, 449, 597
HpyAV CCTTC 2 cut(s) 404, 537
HpyCH4III ACNGT 2 cut(s) 213, 242
HpyCH4V TGCA 4 cut(s) 254, 325, 470, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 467
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 58, 286
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 560
LmnI GCTCC 2 cut(s) 131, 232
Lsp1109I GCAGC 3 cut(s) 146, 238, 266
MaeI CTAG 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 91, 156, 365
MalI GATC 1 cut(s) 562
MboI GATC 1 cut(s) 560
MboII GAAGA 4 cut(s) 79, 133, 395, 400
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 5 cut(s) 101, 126, 179, 320, 548
MmeI TCCRAC 2 cut(s) 365, 560
MnlI CCTC 1 cut(s) 400
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 251, 257
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 2 cut(s) 116, 224
MunI CAATTG 1 cut(s) 126
MvaI CCWGG 2 cut(s) 116, 224
MwoI GCNNNNNNNGC 2 cut(s) 254, 467
NdeII GATC 1 cut(s) 560
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 2 cut(s) 58, 286
NlaIV GGNNCC 3 cut(s) 215, 228, 247
NmuCI GTSAC 2 cut(s) 91, 156
PfeI GAWTC 2 cut(s) 119, 287
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 4 cut(s) 136, 250, 253, 256
Psp124BI GAGCTC 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 114, 222
PspGI CCWGG 2 cut(s) 114, 222
PspN4I GGNNCC 3 cut(s) 215, 228, 247
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 4 cut(s) 42, 113, 215, 236
RsaNI GTAC 4 cut(s) 41, 112, 214, 235
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 489
SatI GCNGC 4 cut(s) 135, 249, 252, 255
Sau3AI GATC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 116, 224
SduI GDGCHC 1 cut(s) 489
SetI ASST 9 cut(s) 39, 77, 139, 153, 172, 259, 415, 489, 523
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 5 cut(s) 101, 126, 179, 320, 548
SsiI CCGC 2 cut(s) 200, 249
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 114, 222
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 2 cut(s) 213, 242
TasI AATT 5 cut(s) 101, 126, 179, 320, 548
TatI WGTACW 1 cut(s) 234
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 119, 287
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 2 cut(s) 91, 156
TseI GCWGC 3 cut(s) 134, 251, 254
Tsp45I GTSAC 2 cut(s) 91, 156
TspDTI ATGAA 2 cut(s) 180, 510
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 2 cut(s) 101, 179
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.