Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016725

Physical Location & Seq

Genomic Coordinates Forward (+)

88355981 .. 88358550

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCAAGAACAGGCAATAAGAACATACAAGCCAAGCTGGTGCTTCTTGGGGACATGGGAGCTGGGAAAACAAGTTTGGTATTGAGATTTGTCACAGGAAAATTTTTGGAGTACCAGGTTCTGTCATTGAATGAAGCTACCATAAAATTTGATATATGGGACACAGCAGGTCAGGAACGTTACCATAGCCTGGCTCCAATGTATTACCGCGGCGCTGCTGCAGCTGTTGTGGTCTATGATATCACAAGCATGGAGTCATTTGTACGAGCAAAGAAGTGGGTTTTTGAATTGCAAAGACAAGCAAATCCAACTTTAATAATGTTCTTAGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGTCTGAGGAAGGTGAACAATATGCTAAAGAAAATGGCTTGATATTTCTTGAAACATCTGCAAAAACTGCACAGAATGTGAATGAGCTCTTTTATGAAATAGCAAAAAAATTGGCTAAGGCTACCCCTTCTCGTCAGACTGGGATAAAATTGCACAGCAGATCACAACCAAGCAGCAGGAGATATTGTTGCTCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

188

Amino Acids

21.1

Weight (kDa)

9.47

Isoelectric Point (pI)

37.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	6 - 156	7.5e-11	ADP-ribosylation factor family
Ras	PF00071	12 - 161	1.4e-49	Ras family
Roc	PF08477	12 - 115	7.4e-25	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016725)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04940 FvH4_1g04940 FvH4_1g04940 FvH4_1g04940
malus_domestica	MD02G1048000.v1.1
prunus_persica	Prupe.7G230200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0090541 RchiOBHm_Chr2g0111381
rosa_laevigata	RLG00000016121
rosa_multiflora	Rmu_sc0004514.1_g000028
rosa_roxburghii	Rroxscaffold_2G00151040
rosa_rugosa	Rorug02G0008900 Rorug02G0009000
rosa_wichuraiana	Rw2G004760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	208, 210
AclI	AACGTT	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	101, 146
AfaI	GTAC	2 cut(s)	113, 264
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	130, 287, 419
AjnI	CCWGG	2 cut(s)	114, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	6 cut(s)	37, 62, 137, 224, 329, 454
AluI	AGCT	6 cut(s)	37, 62, 137, 224, 329, 454
Alw21I	GWGCWC	1 cut(s)	456
AlwNI	CAGNNNCTG	1 cut(s)	121
ApeKI	GCWGC	4 cut(s)	215, 218, 221, 540
ApoI	RAATTY	2 cut(s)	101, 146
AspLEI	GCGC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	4 cut(s)	202, 205, 233, 552
BciT130I	CCWGG	2 cut(s)	116, 191
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	5 cut(s)	211, 216, 219, 222, 541
BlsI	GCNGC	5 cut(s)	212, 217, 220, 223, 542
Bme1390I	CCNGG	2 cut(s)	116, 191
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	2 cut(s)	116, 191
BmrI	ACTGGG	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	208
BsaXI	ACNNNNNCTCC	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	511
BseBI	CCWGG	2 cut(s)	116, 191
BseDI	CCNNGG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	511
BseXI	GCAGC	4 cut(s)	202, 205, 233, 552
BseYI	CCCAGC	1 cut(s)	62
BsgI	GTGCAG	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	65, 173
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmFI	GGGAC	2 cut(s)	65, 173
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	527
BspACI	CCGC	2 cut(s)	208, 210
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	527
Bst2UI	CCWGG	2 cut(s)	116, 191
Bst6I	CTCTTC	2 cut(s)	345, 350
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	325, 372, 483
BstDSI	CCRYGG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	530
BstMBI	GATC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 434
BstNI	CCWGG	2 cut(s)	116, 191
BstSCI	CCNGG	2 cut(s)	114, 189
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	4 cut(s)	202, 205, 233, 552
BtgI	CCRYGG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	158
CaiI	CAGNNNCTG	1 cut(s)	121
CfoI	GCGC	1 cut(s)	215
Cfr42I	CCGCGG	1 cut(s)	211
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	112, 263
CviAII	CATG	2 cut(s)	55, 250
CviQI	GTAC	2 cut(s)	112, 263
DdeI	CTNAG	3 cut(s)	325, 372, 483
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	345, 350
EarI	CTCTTC	2 cut(s)	345, 350
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	454
EcoRII	CCWGG	2 cut(s)	114, 189
EcoRV	GATATC	1 cut(s)	241
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	2 cut(s)	58, 253
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	2 cut(s)	65, 173
FatI	CATG	2 cut(s)	54, 249
Fnu4HI	GCNGC	5 cut(s)	211, 216, 219, 222, 541
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	5 cut(s)	211, 216, 219, 222, 541
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	5 cut(s)	211, 216, 219, 222, 541
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	216
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	58, 253
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	2 cut(s)	373, 504
Hpy188III	TCNNGA	2 cut(s)	173, 416
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	2 cut(s)	371, 504
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	5 cut(s)	221, 292, 428, 437, 520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 434
HpyF3I	CTNAG	3 cut(s)	325, 372, 483
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	58, 253
HspAI	GCGC	1 cut(s)	213
KspI	CCGCGG	1 cut(s)	211
Kzo9I	GATC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	59, 199
Lsp1109I	GCAGC	4 cut(s)	202, 205, 233, 552
MabI	ACCWGGT	1 cut(s)	114
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	91, 179
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	2 cut(s)	362, 367
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	5 cut(s)	101, 146, 287, 476, 515
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	210, 224
MspR9I	CCNGG	2 cut(s)	116, 191
MvaI	CCWGG	2 cut(s)	116, 191
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	221, 434
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	2 cut(s)	58, 253
NlaIV	GGNNCC	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	91
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	5 cut(s)	212, 217, 220, 223, 542
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	2 cut(s)	114, 189
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	2 cut(s)	114, 189
PspN4I	GGNNCC	1 cut(s)	195
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	2 cut(s)	113, 264
RsaNI	GTAC	2 cut(s)	112, 263
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	456
SacII	CCGCGG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	5 cut(s)	211, 216, 219, 222, 541
Sau3AI	GATC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	116, 191
SduI	GDGCHC	1 cut(s)	456
SexAI	ACCWGGT	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	219
Sfr303I	CCGCGG	1 cut(s)	211
SgrBI	CCGCGG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	248
Sse9I	AATT	5 cut(s)	101, 146, 287, 476, 515
SsiI	CCGC	2 cut(s)	208, 210
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	2 cut(s)	114, 189
TaiI	ACGT	1 cut(s)	181
TasI	AATT	5 cut(s)	101, 146, 287, 476, 515
TauI	GCSGC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	4 cut(s)	215, 218, 221, 540
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	2 cut(s)	147, 477
Van91I	CCANNNNNTGG	1 cut(s)	190
XapI	RAATTY	2 cut(s)	101, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.