RchiOBHm_Chr2g0090541

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016725
Physical Location & Seq
Reverse (-)
4356446 .. 4359090
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46578

Sequence Viewer

Length: 600 bp
ATGGCAAGAACAGGCAATAAGAACATACAAGCCAAGCTGGTGCTTCTTGGGGACATGGGAGCTGGGAAAACAAGTTTGGTATTGAGATTTGTCACAGGAAAATTTTTGGAGTACCAGGAATCAACTATTGGAGCAGCTTTCTTTACTCAGGTTCTGTCATTGAATGAAGCTACCATAAAATTTGATATATGGGACACAGCAGGTCAGGAACGTTACCATAGCCTGGCTCCAATGTATTACCGCGGCGCTGCTGCAGCTGTTGTGGTCTATGATATCACAAGCATGGAGTCATTTATACGAGCAAAGAAGTGGGTTTTTGAATTGCAAAGACAAGCAAATCCAACTTTAATAATGTTCTTAGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGTCTGAGGAAGGTGAACAATATGCTAAAGAAAATGGCTTGGTATTTCTTGAAACATCTGCAAAAACTGCACAGAATGTGAATGAGCTCTTTTATGAAATAGCAAAAAAATTGGCTAAGGCTACCCCCTCTCGTCAGACTGGGATAAAATTGCACAGCAGATCACAACCAAGCAGCAGGAGATATTGTTGCTCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 ko04144 ko04145 ko04962 ko05146 ko05152 map04014 map04144 map04145 map04962 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

199

Amino Acids

22.25

Weight (kDa)

9.37

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 6 - 167 1.9e-12 ADP-ribosylation factor family
Ras PF00071 12 - 172 2.6e-59 Ras family
Roc PF08477 12 - 126 4.9e-33 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016725)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04940 FvH4_1g04940 FvH4_1g04940 FvH4_1g04940
malus_domestica MD02G1048000.v1.1
prunus_persica Prupe.7G230200_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0090541 RchiOBHm_Chr2g0111381
rosa_laevigata RLG00000016121
rosa_multiflora Rmu_sc0004514.1_g000028
rosa_roxburghii Rroxscaffold_2G00151040
rosa_rugosa Rorug02G0008900 Rorug02G0009000
rosa_wichuraiana Rw2G004760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 191
AccB7I CCANNNNNTGG 1 cut(s) 223
AccII CGCG 1 cut(s) 243
AciI CCGC 2 cut(s) 241, 243
AclI AACGTT 1 cut(s) 211
AcsI RAATTY 2 cut(s) 101, 179
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 3 cut(s) 163, 320, 452
AjnI CCWGG 2 cut(s) 114, 222
AjuI GAANNNNNNNTTGG 4 cut(s) 59, 91, 111, 143
AluBI AGCT 7 cut(s) 37, 62, 137, 170, 257, 362, 487
AluI AGCT 7 cut(s) 37, 62, 137, 170, 257, 362, 487
Alw21I GWGCWC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 154
ApeKI GCWGC 5 cut(s) 134, 248, 251, 254, 573
ApoI RAATTY 2 cut(s) 101, 179
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 425
BanII GRGCYC 1 cut(s) 489
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 5 cut(s) 146, 235, 238, 266, 585
BciT130I CCWGG 2 cut(s) 116, 224
BfmI CTRYAG 1 cut(s) 252
BfoI RGCGCY 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 135, 244, 249, 252, 255, 574
BlsI GCNGC 6 cut(s) 136, 245, 250, 253, 256, 575
Bme1390I CCNGG 2 cut(s) 116, 224
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 2 cut(s) 116, 224
BmrI ACTGGG 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 549
Bpu10I CCTNAGC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 241
BsaXI ACNNNNNCTCC 1 cut(s) 571
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 544
BseBI CCWGG 2 cut(s) 116, 224
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 161, 396
BseNI ACTGG 1 cut(s) 544
BseXI GCAGC 5 cut(s) 146, 235, 238, 266, 585
BseYI CCCAGC 1 cut(s) 62
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 489
BslFI GGGAC 2 cut(s) 65, 206
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 65, 206
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 1 cut(s) 560
BspACI CCGC 2 cut(s) 241, 243
BspCNI CTCAG 2 cut(s) 160, 397
BspFNI CGCG 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 560
Bst2UI CCWGG 2 cut(s) 116, 224
Bst6I CTCTTC 2 cut(s) 378, 383
BstAPI GCANNNNNTGC 1 cut(s) 467
BstDEI CTNAG 4 cut(s) 147, 358, 405, 516
BstDSI CCRYGG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 249
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 1 cut(s) 563
BstMBI GATC 1 cut(s) 560
BstMWI GCNNNNNNNGC 2 cut(s) 254, 467
BstNI CCWGG 2 cut(s) 116, 224
BstSCI CCNGG 2 cut(s) 114, 222
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 1 cut(s) 243
BstV1I GCAGC 5 cut(s) 146, 235, 238, 266, 585
BtgI CCRYGG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 248
Cfr42I CCGCGG 1 cut(s) 244
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 55, 283
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 4 cut(s) 147, 358, 405, 516
DpnI GATC 1 cut(s) 562
DpnII GATC 1 cut(s) 560
Eam1104I CTCTTC 2 cut(s) 378, 383
EarI CTCTTC 2 cut(s) 378, 383
Ecl136II GAGCTC 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 489
Eco32I GATATC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 487
EcoRII CCWGG 2 cut(s) 114, 222
EcoRV GATATC 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 2 cut(s) 58, 286
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 65, 206
FatI CATG 2 cut(s) 54, 282
Fnu4HI GCNGC 6 cut(s) 135, 244, 249, 252, 255, 574
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 6 cut(s) 135, 244, 249, 252, 255, 574
GlaI GCGC 1 cut(s) 247
GluI GCNGC 6 cut(s) 135, 244, 249, 252, 255, 574
GsaI CCCAGC 1 cut(s) 66
HaeII RGCGCY 1 cut(s) 249
HhaI GCGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 58, 286
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HinfI GANTC 2 cut(s) 119, 287
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 406, 537
Hpy188III TCNNGA 2 cut(s) 206, 449
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 5 cut(s) 254, 325, 461, 470, 553
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 467
HpyF3I CTNAG 4 cut(s) 147, 358, 405, 516
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 2 cut(s) 58, 286
HspAI GCGC 1 cut(s) 246
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 1 cut(s) 560
LmnI GCTCC 3 cut(s) 59, 131, 232
Lsp1109I GCAGC 5 cut(s) 146, 235, 238, 266, 585
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 91, 212
MalI GATC 1 cut(s) 562
MboI GATC 1 cut(s) 560
MboII GAAGA 2 cut(s) 395, 400
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 5 cut(s) 101, 179, 320, 509, 548
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 2 cut(s) 400, 538
MseI TTAA 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 243, 257
MspR9I CCNGG 2 cut(s) 116, 224
MvaI CCWGG 2 cut(s) 116, 224
MvnI CGCG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 254, 467
NdeII GATC 1 cut(s) 560
NlaIII CATG 2 cut(s) 58, 286
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 119
PflMI CCANNNNNTGG 1 cut(s) 223
PkrI GCNGC 6 cut(s) 136, 245, 250, 253, 256, 575
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 489
Psp1406I AACGTT 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 114, 222
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 114, 222
PspN4I GGNNCC 1 cut(s) 228
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 489
SacII CCGCGG 1 cut(s) 244
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 6 cut(s) 135, 244, 249, 252, 255, 574
Sau3AI GATC 1 cut(s) 560
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 2 cut(s) 116, 224
SduI GDGCHC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 252
Sfr303I CCGCGG 1 cut(s) 244
SgrBI CCGCGG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 5 cut(s) 101, 179, 320, 509, 548
SsiI CCGC 2 cut(s) 241, 243
SstI GAGCTC 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 114, 222
TaiI ACGT 1 cut(s) 214
TasI AATT 5 cut(s) 101, 179, 320, 509, 548
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 5 cut(s) 134, 248, 251, 254, 573
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 180, 510
Van91I CCANNNNNTGG 1 cut(s) 223
XapI RAATTY 2 cut(s) 101, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.