Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0008826

Physical Location & Seq

Genomic Coordinates Reverse (-)

20291470 .. 20294215

Gene Structure 2746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGTGAAAAAAAACCCAGAACTCCTCCCAAAGGTAGAGCACCCCGAACTGCTCCCAAAAGTAGAGCCAACACTCGCAAAAGACGTAAACAAGAAGAAGAGGAAGAAGAAGAACCCTCAGAAACCAATCTTAATCTATGTTGATGCTGATGTAAATCCCATTATTGATGCCCAAAAATCTATTGTAATAAATCAAGCTCTACAGAAGTCAGCAATAAAGGCAAATCCAGAGCCAGTGCCAATTCTCACAGCAGTCAAAAGCAAGAAGAGGAAGAGAAAGAAGAGCAAAACCACAGTCCCTGTTGATGCGGCAAACCAAGTTGATGTTGCAGCCCAAGTTGGTGCGGCAGGACAAGAAGATGCGGCAAAGAAAGTTAAAGTTGATGCGGAGCTAGAGCCAATACTCACAGCAGTCAAAAGCAAGAAGAGGAAGAAAAAGAAGAGCAAAACCAAGAAGAGGAAGAAAAAGAAGAGCAAAACCAGAGCCCCTGTTGATGCGCCAGAGCCAATACTCAAAGCAGTAAAAAGCAACAAGAGCAAAACCAAAGCAGTCAAAAGCAAGAAGAGCAAAACCAAAGCAGTCAAAAGCAAGAAGAGCAAAACCACAGCGGCAAAGAAAATTGATGCGGCAAAGAATGTTGAAGGGCCAAAATATGTTGAAATATGTGTGATATGCCGGAAAAAAGGGCATCTCATCCCAACTTGCCCTGAGCTGAACGAGAAGATTGTTCCCAACCCGAACCACAATACTGAACAGAAAAAGGAATCCGGGAAGAAGGGTTCTGCGCGCCCTCAGCCTCCTCAAGATGTGAAAATGAGGAAAGGTCAAGAGGACAGGTTACTCGTTACTGGTTGCGCTCTTCAGGTTGATCCCATGGCAGATGAGACGTATGGTGGTAAAGAAGACGAGTCCACTGTGAAACTGAAAGAGGGCCAAAAGGACAGGTTACTTGTGACTGGTTGCGCTCTTCAGGCTGACCCCATGGCAGATGAGACATACGATGGTAAAGAAGACGAGTCCACTGTGAAACTGAAAGAAGGCCAAGAGGACAGGTTACTTGCGACTGGTTGCATGCTTCAGGTTGATTCCATGGCAGATGAGACGTATGGTGGTAAAGAAGACGAGTCCACTGGTGAAAGTTTCACAAGAAAGTCATGTAAAATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

42.82

Weight (kDa)

9.78

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008826)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720
malus_domestica	MD02G1046100.v1.1
prunus_persica	Prupe.7G231900_v2.0.a1 Prupe.7G231900_v2.0.a1
pyrus_communis	pycom02g03860 pycom13g11400
rosa_chinensis	RchiOBHm_Chr2g0090321
rosa_laevigata	RLG00000016098
rosa_roxburghii	Rroxscaffold_2G00151280
rosa_rugosa	Rorug02G0006500
rosa_samantha	Rh2AG052500 Rh2BG051100 Rh2CG053300 Rh2DG052400
rosa_wichuraiana	Rw2G004440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	787
AciI	CCGC	6 cut(s)	308, 344, 362, 386, 608, 626
AclWI	GGATC	1 cut(s)	863
AcuI	CTGAAG	3 cut(s)	845, 953, 1061
AfiI	CCNNNNNNNGG	2 cut(s)	31, 456
AgsI	TTSAA	2 cut(s)	641, 659
AloI	GAACNNNNNNTCC	2 cut(s)	763, 795
AluBI	AGCT	3 cut(s)	197, 391, 712
AluI	AGCT	3 cut(s)	197, 391, 712
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	3 cut(s)	878, 986, 1094
AlwI	GGATC	1 cut(s)	863
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	644, 931, 1039
ApeKI	GCWGC	1 cut(s)	329
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AspLEI	GCGC	5 cut(s)	499, 787, 789, 857, 965
AspS9I	GGNCC	2 cut(s)	644, 931
AsuC2I	CCSGG	1 cut(s)	769
AsuHPI	GGTGA	2 cut(s)	16, 1145
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	3 cut(s)	909, 1017, 1125
Bbv12I	GWGCWC	1 cut(s)	42
BbvCI	CCTCAGC	1 cut(s)	792
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	995
BcnI	CCSGG	1 cut(s)	769
BcoDI	GTCTC	3 cut(s)	878, 986, 1094
BfaI	CTAG	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	200
BisI	GCNGC	6 cut(s)	309, 330, 345, 363, 609, 627
BlsI	GCNGC	6 cut(s)	310, 331, 346, 364, 610, 628
Bme1390I	CCNGG	1 cut(s)	769
BmgT120I	GGNCC	2 cut(s)	644, 931
BmrFI	CCNGG	1 cut(s)	769
BmsI	GCATC	8 cut(s)	133, 157, 295, 349, 373, 484, 613, 697
BpiI	GAAGAC	3 cut(s)	909, 1017, 1125
Bpu10I	CCTNAGC	2 cut(s)	708, 792
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	769
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	873, 981, 1089
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 456
Bse1I	ACTGG	5 cut(s)	233, 853, 961, 1069, 1135
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	3 cut(s)	873, 981, 1089
BseGI	GGATG	1 cut(s)	693
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	31, 456
BseMII	CTCAG	3 cut(s)	131, 699, 806
BseNI	ACTGG	5 cut(s)	233, 853, 961, 1069, 1135
BsePI	GCGCGC	1 cut(s)	785
BseRI	GAGGAG	2 cut(s)	14, 789
BseXI	GCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	787
BshFI	GGCC	3 cut(s)	646, 933, 1041
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	676, 768
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	31, 456
BsmAI	GTCTC	3 cut(s)	878, 986, 1094
BsmBI	CGTCTC	2 cut(s)	878, 1094
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	646, 933, 1041
Bsp1286I	GDGCHC	2 cut(s)	42, 487
Bsp143I	GATC	1 cut(s)	868
Bsp19I	CCATGG	3 cut(s)	873, 981, 1089
BspACI	CCGC	6 cut(s)	308, 344, 362, 386, 608, 626
BspANI	GGCC	3 cut(s)	646, 933, 1041
BspCNI	CTCAG	3 cut(s)	130, 700, 805
BspFNI	CGCG	1 cut(s)	787
BspPI	GGATC	1 cut(s)	863
BspQI	GCTCTTC	7 cut(s)	275, 434, 464, 557, 587, 864, 972
BsrI	ACTGG	5 cut(s)	233, 853, 961, 1069, 1135
BssECI	CCNNGG	3 cut(s)	873, 981, 1089
BssHII	GCGCGC	1 cut(s)	785
BssMI	GATC	1 cut(s)	868
BssT1I	CCWWGG	3 cut(s)	873, 981, 1089
Bst4CI	ACNGT	3 cut(s)	295, 916, 1024
BstC8I	GCNNGC	2 cut(s)	787, 1073
BstDEI	CTNAG	3 cut(s)	117, 708, 792
BstDSI	CCRYGG	3 cut(s)	873, 981, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	693
BstFNI	CGCG	1 cut(s)	787
BstHHI	GCGC	5 cut(s)	499, 787, 789, 857, 965
BstKTI	GATC	1 cut(s)	871
BstMAI	GTCTC	3 cut(s)	878, 986, 1094
BstMBI	GATC	1 cut(s)	868
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 534, 564, 594, 793, 971
BstNSI	RCATGY	1 cut(s)	1075
BstSCI	CCNGG	1 cut(s)	767
BstSFI	CTRYAG	1 cut(s)	200
BstUI	CGCG	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	3 cut(s)	909, 1017, 1125
BsuRI	GGCC	3 cut(s)	646, 933, 1041
BtgI	CCRYGG	3 cut(s)	873, 981, 1089
BtsCI	GGATG	1 cut(s)	693
BtsIMutI	CAGTG	4 cut(s)	240, 912, 1020, 1128
Cac8I	GCNNGC	2 cut(s)	787, 1073
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	5 cut(s)	499, 787, 789, 857, 965
Cfr13I	GGNCC	2 cut(s)	644, 931
CviAII	CATG	5 cut(s)	874, 982, 1072, 1090, 1155
DdeI	CTNAG	3 cut(s)	117, 708, 792
DpnI	GATC	1 cut(s)	870
DpnII	GATC	1 cut(s)	868
Eco130I	CCWWGG	3 cut(s)	873, 981, 1089
Eco24I	GRGCYC	1 cut(s)	487
Eco57I	CTGAAG	3 cut(s)	845, 953, 1061
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoT14I	CCWWGG	3 cut(s)	873, 981, 1089
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	3 cut(s)	873, 981, 1089
Esp3I	CGTCTC	2 cut(s)	878, 1094
FaeI	CATG	5 cut(s)	877, 985, 1075, 1093, 1158
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	5 cut(s)	873, 981, 1071, 1089, 1154
Fnu4HI	GCNGC	6 cut(s)	309, 330, 345, 363, 609, 627
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	6 cut(s)	309, 330, 345, 363, 609, 627
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	5 cut(s)	498, 786, 788, 856, 964
GluI	GCNGC	6 cut(s)	309, 330, 345, 363, 609, 627
HaeIII	GGCC	3 cut(s)	646, 933, 1041
HapII	CCGG	2 cut(s)	676, 768
HhaI	GCGC	5 cut(s)	499, 787, 789, 857, 965
Hin1II	CATG	5 cut(s)	877, 985, 1075, 1093, 1158
Hin6I	GCGC	5 cut(s)	497, 785, 787, 855, 963
HinP1I	GCGC	5 cut(s)	497, 785, 787, 855, 963
HinfI	GANTC	5 cut(s)	764, 908, 1016, 1085, 1124
HpaII	CCGG	2 cut(s)	676, 768
HphI	GGTGA	2 cut(s)	16, 1145
Hpy166II	GTNNAC	4 cut(s)	88, 912, 1020, 1128
Hpy188I	TCNGA	2 cut(s)	120, 1166
Hpy188III	TCNNGA	3 cut(s)	227, 803, 827
Hpy8I	GTNNAC	4 cut(s)	88, 912, 1020, 1128
HpyAV	CCTTC	3 cut(s)	635, 769, 1031
HpyCH4III	ACNGT	3 cut(s)	295, 916, 1024
HpyCH4IV	ACGT	3 cut(s)	84, 887, 1103
HpyCH4V	TGCA	2 cut(s)	329, 1071
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 534, 564, 594, 793, 971
HpyF3I	CTNAG	3 cut(s)	117, 708, 792
HpySE526I	ACGT	3 cut(s)	84, 887, 1103
Hsp92II	CATG	5 cut(s)	877, 985, 1075, 1093, 1158
HspAI	GCGC	5 cut(s)	497, 785, 787, 855, 963
Kzo9I	GATC	1 cut(s)	868
LguI	GCTCTTC	7 cut(s)	275, 434, 464, 557, 587, 864, 972
LmnI	GCTCC	2 cut(s)	57, 388
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	8 cut(s)	133, 157, 295, 349, 373, 484, 613, 697
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	3 cut(s)	84, 887, 1103
MaeIII	GTNAC	5 cut(s)	837, 844, 945, 952, 1053
MalI	GATC	1 cut(s)	870
MboI	GATC	1 cut(s)	868
MhlI	GDGCHC	2 cut(s)	42, 487
MluCI	AATT	2 cut(s)	240, 618
MlyI	GAGTC	3 cut(s)	917, 1025, 1133
MseI	TTAA	2 cut(s)	131, 375
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	2 cut(s)	676, 768
MspR9I	CCNGG	1 cut(s)	769
MvnI	CGCG	1 cut(s)	787
MwoI	GCNNNNNNNGC	6 cut(s)	218, 534, 564, 594, 793, 971
NciI	CCSGG	1 cut(s)	769
NcoI	CCATGG	3 cut(s)	873, 981, 1089
NdeII	GATC	1 cut(s)	868
NlaIII	CATG	5 cut(s)	877, 985, 1075, 1093, 1158
NmuCI	GTSAC	1 cut(s)	952
NspI	RCATGY	1 cut(s)	1075
PaeI	GCATGC	1 cut(s)	1075
PauI	GCGCGC	1 cut(s)	785
PciSI	GCTCTTC	7 cut(s)	275, 434, 464, 557, 587, 864, 972
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	764, 1085
PfoI	TCCNGGA	1 cut(s)	767
PkrI	GCNGC	6 cut(s)	310, 331, 346, 364, 610, 628
PleI	GAGTC	3 cut(s)	916, 1024, 1132
PpsI	GAGTC	3 cut(s)	916, 1024, 1132
PspPI	GGNCC	2 cut(s)	644, 931
PstNI	CAGNNNCTG	1 cut(s)	299
PteI	GCGCGC	1 cut(s)	785
SapI	GCTCTTC	7 cut(s)	275, 434, 464, 557, 587, 864, 972
SaqAI	TTAA	2 cut(s)	131, 375
SatI	GCNGC	6 cut(s)	309, 330, 345, 363, 609, 627
Sau3AI	GATC	1 cut(s)	868
Sau96I	GGNCC	2 cut(s)	644, 931
SchI	GAGTC	3 cut(s)	917, 1025, 1133
ScrFI	CCNGG	1 cut(s)	769
SduI	GDGCHC	2 cut(s)	42, 487
SfaNI	GCATC	8 cut(s)	133, 157, 295, 349, 373, 484, 613, 697
SfcI	CTRYAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
SphI	GCATGC	1 cut(s)	1075
Sse9I	AATT	2 cut(s)	240, 618
SsiI	CCGC	6 cut(s)	308, 344, 362, 386, 608, 626
SspMI	CTAG	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	767
StyI	CCWWGG	3 cut(s)	873, 981, 1089
TaaI	ACNGT	3 cut(s)	295, 916, 1024
TaiI	ACGT	3 cut(s)	87, 890, 1106
TasI	AATT	2 cut(s)	240, 618
TauI	GCSGC	5 cut(s)	311, 347, 365, 611, 629
TfiI	GAWTC	2 cut(s)	764, 1085
Tru1I	TTAA	2 cut(s)	131, 375
Tru9I	TTAA	2 cut(s)	131, 375
TscAI	CASTG	4 cut(s)	240, 919, 1027, 1135
TseFI	GTSAC	1 cut(s)	952
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	952
TspRI	CASTG	4 cut(s)	240, 919, 1027, 1135
XagI	CCTNNNNNAGG	1 cut(s)	29
XceI	RCATGY	1 cut(s)	1075
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.