Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008826

Physical Location & Seq

Genomic Coordinates Forward (+)

3641095 .. 3644856

Gene Structure 3762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG051100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGGAAAGAAACGCAAATTAGGGCAACGCGAAGCAGCGCAGTCGCAAGTGGCGGAGCCGATCGTTATCTCAGTTGACGACGCCGGAAAGCCTTTGGAACTGTTGAAAGAGATCGGATTAATACAAGCGAATGTGCTCCCAAACCCTAATGAGGTCGCAGTAAACGCCGCAGAACATCCCGGGGCAAATCCTTTGGTGCCGGAGATTGAAGGGAAATCCGAACCAGTGGAGCCGAGAAAGAAGAAGAAGAAGAAGAAGAAGCACAAGCCGATTGATACCTGTGTCGACGTCGCCGGAAAACCTTTAGAACCGTTGAAAGAAGTCGGATTGATGCAAGCAAATCCGGCGGAGCTGCCGCCCACAAATCCAACGATTGAAGCAAAATCCGGAGCAGAACTGAGCTCAAATCCGGTTCCGGAGATTGAAGCAAAACCAGCGGAGCTGCCGCCCCTAAATACAGTGACAAAGGATGGAGTGACATCCGAAGAGCCGAGGATGAATCCGGACCCAAATGTTGAAGCAAAAACTGGAACCGAAGAGGTGACAGTGAAAAAGAAGAAGAAGAACAAGAAGCAGAAGCTAATGGAGAGTCAGAGCACAGTGACAACTTGTGTTGATAATGTGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATATGCCACTAAAAATGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCCGGGCACAGTCATAACTTGTGTTGATAATGTGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATGTGCCACTAAAAATGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCCGGGCACAGTCATAACTTGTGTTGATAATGTGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATGTGCCACTAAAAAAGAGGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCGGGGCACAGTCATAACTTGTGTTGATGATGTGGAGAAAAGTAGTGAGGCGAGAGTCGATGGGCAGCTTCGAAGGCCAGGGCCAGTAGTAACAGAGGTGAAGGGGGCGGAGGGCACAGTCACAGCTTGTGTTAATGCTGAAGGGAAAATCAGTGAAGGAGGTGAAGTAGCTGAGCAAGTGACAATGCCGGGGCTAATACCGGCAGTTGGAGTAGTGGAGAATAAGAAGAGTAAGAAGAGGAAAAGGAAAGGGAACAAGGAGATGGAGAGCACAAACATTGCTTGTGTTAATGCTGGAAAAAATGTAGAGCTGCTCCCTAATCCGTTGCCAAATGTGGAAGCAAAGCCTGGGGAGTTGACCCCAAATGCAGATGTGGAAGGGGAATGTAAGAAGGGGAAAAGAAAGAAGAAAAACAAAAGAAAAGGAGCTGAGGAGAAACCACTCAAACAATATGTTGAAGTATGTGTGATATGTCGAGGAAAAGGGCATATCATCTCGACTTGCCCTCTGCTGAGTAACAAGATATCTGGAAATAAGCTTTCTGAGTGCCCTCAGCTTCTTCAAGACGGTAATTCGTCCTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

515

Amino Acids

56.04

Weight (kDa)

9.16

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008826)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720
malus_domestica	MD02G1046100.v1.1
prunus_persica	Prupe.7G231900_v2.0.a1 Prupe.7G231900_v2.0.a1
pyrus_communis	pycom02g03860 pycom13g11400
rosa_chinensis	RchiOBHm_Chr2g0090321
rosa_laevigata	RLG00000016098
rosa_roxburghii	Rroxscaffold_2G00151280
rosa_rugosa	Rorug02G0006500
rosa_samantha	Rh2AG052500 Rh2BG051100 Rh2CG053300 Rh2DG052400
rosa_wichuraiana	Rw2G004440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	291
AccB1I	GGYRCC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	3 cut(s)	386, 415, 502
AciI	CCGC	8 cut(s)	53, 168, 347, 356, 437, 446, 961, 1067
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	2 cut(s)	81, 288
AfiI	CCNNNNNNNGG	2 cut(s)	151, 1166
AgsI	TTSAA	8 cut(s)	106, 209, 316, 377, 425, 518, 1418, 1523
AjnI	CCWGG	2 cut(s)	1036, 1306
Alw21I	GWGCWC	4 cut(s)	138, 404, 599, 1232
AlwNI	CAGNNNCTG	3 cut(s)	703, 826, 949
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	3 cut(s)	386, 415, 502
AoxI	GGCC	2 cut(s)	1034, 1040
ApeKI	GCWGC	5 cut(s)	35, 352, 442, 1024, 1270
AseI	ATTAAT	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	505, 1040
AsuC2I	CCSGG	5 cut(s)	180, 181, 717, 840, 1149
AsuHPI	GGTGA	6 cut(s)	553, 647, 770, 893, 1069, 1133
AsuII	TTCGAA	1 cut(s)	1030
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	505
BaeGI	GKGCMC	5 cut(s)	722, 845, 968, 1076, 1511
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	4 cut(s)	138, 404, 599, 1232
BbvCI	CCTCAGC	2 cut(s)	1389, 1512
BbvI	GCAGC	5 cut(s)	47, 339, 429, 1036, 1257
BccI	CCATC	3 cut(s)	464, 1013, 1216
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	2 cut(s)	1038, 1308
BcnI	CCSGG	5 cut(s)	180, 181, 717, 840, 1149
BisI	GCNGC	8 cut(s)	36, 168, 353, 356, 443, 446, 1025, 1271
BlpI	GCTNAGC	1 cut(s)	1131
BlsI	GCNGC	8 cut(s)	37, 169, 354, 357, 444, 447, 1026, 1272
Bme1390I	CCNGG	7 cut(s)	180, 181, 717, 840, 1038, 1149, 1308
Bme18I	GGWCC	1 cut(s)	505
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	505, 1040
BmiI	GGNNCC	6 cut(s)	57, 198, 231, 414, 507, 532
BmrFI	CCNGG	7 cut(s)	180, 181, 717, 840, 1038, 1149, 1308
BmsI	GCATC	4 cut(s)	321, 702, 825, 948
Bpu10I	CCTNAGC	2 cut(s)	1389, 1512
Bpu1102I	GCTNAGC	1 cut(s)	1131
Bpu14I	TTCGAA	1 cut(s)	1030
BpuMI	CCSGG	5 cut(s)	180, 181, 717, 840, 1149
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	81, 288
BsaJI	CCNNGG	6 cut(s)	179, 180, 491, 1037, 1148, 1307
BsaWI	WCCGGW	4 cut(s)	386, 409, 415, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	1110, 1140
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 1166
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	3 cut(s)	224, 532, 1043
Bse3DI	GCAATG	1 cut(s)	1236
Bse8I	GATNNNNATC	1 cut(s)	65
BseAI	TCCGGA	3 cut(s)	386, 415, 502
BseBI	CCWGG	2 cut(s)	1038, 1308
BseDI	CCNNGG	6 cut(s)	179, 180, 491, 1037, 1148, 1307
BseGI	GGATG	4 cut(s)	175, 475, 479, 501
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	151, 1166
BseMI	GCAATG	1 cut(s)	1236
BseMII	CTCAG	7 cut(s)	84, 389, 1122, 1380, 1463, 1494, 1526
BseNI	ACTGG	3 cut(s)	224, 532, 1043
BseRI	GAGGAG	1 cut(s)	1406
BseSI	GKGCMC	5 cut(s)	722, 845, 968, 1076, 1511
BseXI	GCAGC	5 cut(s)	47, 339, 429, 1036, 1257
BseYI	CCCAGC	3 cut(s)	703, 826, 949
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	1036, 1042
BshNI	GGYRCC	1 cut(s)	196
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	4 cut(s)	138, 404, 599, 1232
BsiHKCI	CYCGRG	1 cut(s)	179
BslI	CCNNNNNNNGG	2 cut(s)	151, 1166
BsnI	GGCC	2 cut(s)	1036, 1042
BsoBI	CYCGRG	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	1030
Bsp1286I	GDGCHC	9 cut(s)	138, 404, 599, 722, 845, 968, 1076, 1232, 1511
Bsp13I	TCCGGA	3 cut(s)	386, 415, 502
Bsp143I	GATC	2 cut(s)	60, 111
Bsp1720I	GCTNAGC	1 cut(s)	1131
BspACI	CCGC	8 cut(s)	53, 168, 347, 356, 437, 446, 961, 1067
BspANI	GGCC	2 cut(s)	1036, 1042
BspCNI	CTCAG	7 cut(s)	83, 390, 1123, 1381, 1464, 1495, 1525
BspEI	TCCGGA	3 cut(s)	386, 415, 502
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	6 cut(s)	57, 198, 231, 414, 507, 532
BspQI	GCTCTTC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	1030
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	1236
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	3 cut(s)	224, 532, 1043
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	6 cut(s)	179, 180, 491, 1037, 1148, 1307
BssMI	GATC	2 cut(s)	60, 111
BssNI	GRCGYC	2 cut(s)	81, 288
Bst2UI	CCWGG	2 cut(s)	1038, 1308
Bst6I	CTCTTC	4 cut(s)	480, 531, 1181, 1190
BstACI	GRCGYC	2 cut(s)	81, 288
BstBI	TTCGAA	1 cut(s)	1030
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	7 cut(s)	70, 398, 1131, 1389, 1472, 1503, 1512
BstF5I	GGATG	4 cut(s)	175, 475, 479, 501
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	63, 114
BstMBI	GATC	2 cut(s)	60, 111
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 344, 434, 1033
BstNI	CCWGG	2 cut(s)	1038, 1308
BstSCI	CCNGG	7 cut(s)	178, 179, 715, 838, 1036, 1147, 1306
BstSLI	GKGCMC	5 cut(s)	722, 845, 968, 1076, 1511
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	47, 339, 429, 1036, 1257
BsuRI	GGCC	2 cut(s)	1036, 1042
BtsCI	GGATG	4 cut(s)	175, 475, 479, 501
BtsIMutI	CAGTG	5 cut(s)	231, 465, 552, 606, 1117
Cac8I	GCNNGC	1 cut(s)	336
CaiI	CAGNNNCTG	3 cut(s)	703, 826, 949
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	2 cut(s)	505, 1040
Cfr9I	CCCGGG	1 cut(s)	179
CseI	GACGC	1 cut(s)	89
DdeI	CTNAG	7 cut(s)	70, 398, 1131, 1389, 1472, 1503, 1512
DpnI	GATC	2 cut(s)	62, 113
DpnII	GATC	2 cut(s)	60, 111
Eam1104I	CTCTTC	4 cut(s)	480, 531, 1181, 1190
EarI	CTCTTC	4 cut(s)	480, 531, 1181, 1190
EciI	GGCGGA	3 cut(s)	68, 362, 1082
Ecl136II	GAGCTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	1485
Eco47I	GGWCC	1 cut(s)	505
Eco53kI	GAGCTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	1119
Eco88I	CYCGRG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	1036, 1306
EcoRV	GATATC	1 cut(s)	1485
EcoT38I	GRGCYC	1 cut(s)	404
FaiI	YATR	8 cut(s)	662, 728, 851, 974, 1413, 1423, 1432, 1449
FauI	CCCGC	1 cut(s)	954
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	8 cut(s)	36, 168, 353, 356, 443, 446, 1025, 1271
FokI	GGATG	4 cut(s)	162, 466, 482, 508
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	8 cut(s)	36, 168, 353, 356, 443, 446, 1025, 1271
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	8 cut(s)	36, 168, 353, 356, 443, 446, 1025, 1271
GsaI	CCCAGC	3 cut(s)	707, 830, 953
HaeIII	GGCC	2 cut(s)	1036, 1042
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	81, 288
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	3 cut(s)	76, 286, 1317
HindII	GTYRAC	3 cut(s)	76, 286, 1317
HindIII	AAGCTT	1 cut(s)	1496
HinfI	GANTC	3 cut(s)	499, 589, 1014
HphI	GGTGA	6 cut(s)	553, 647, 770, 893, 1069, 1133
Hpy166II	GTNNAC	4 cut(s)	76, 163, 286, 1317
Hpy188I	TCNGA	6 cut(s)	116, 220, 326, 484, 594, 1504
Hpy188III	TCNNGA	6 cut(s)	387, 416, 503, 1456, 1488, 1523
Hpy8I	GTNNAC	4 cut(s)	76, 163, 286, 1317
Hpy99I	CGWCG	6 cut(s)	83, 290, 293, 653, 776, 899
HpyAV	CCTTC	7 cut(s)	203, 1026, 1054, 1094, 1109, 1331, 1345
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	334, 1328
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 344, 434, 1033
HpyF3I	CTNAG	7 cut(s)	70, 398, 1131, 1389, 1472, 1503, 1512
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	2 cut(s)	81, 288
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	3 cut(s)	386, 415, 502
Kzo9I	GATC	2 cut(s)	60, 111
LguI	GCTCTTC	1 cut(s)	480
LmnI	GCTCC	8 cut(s)	55, 141, 229, 349, 389, 439, 1278, 1385
Lsp1109I	GCAGC	5 cut(s)	47, 339, 429, 1036, 1257
LweI	GCATC	4 cut(s)	321, 702, 825, 948
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	8 cut(s)	460, 475, 541, 601, 1048, 1078, 1138, 1475
MalI	GATC	2 cut(s)	62, 113
MboI	GATC	2 cut(s)	60, 111
MhlI	GDGCHC	9 cut(s)	138, 404, 599, 722, 845, 968, 1076, 1232, 1511
MluCI	AATT	2 cut(s)	17, 1531
MlyI	GAGTC	2 cut(s)	598, 1023
MmeI	TCCRAC	3 cut(s)	304, 392, 1147
MroI	TCCGGA	3 cut(s)	386, 415, 502
MseI	TTAA	4 cut(s)	119, 1092, 1248, 1546
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	7 cut(s)	180, 181, 717, 840, 1038, 1149, 1308
MvaI	CCWGG	2 cut(s)	1038, 1308
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	4 cut(s)	164, 344, 434, 1033
NciI	CCSGG	5 cut(s)	180, 181, 717, 840, 1149
NdeII	GATC	2 cut(s)	60, 111
NlaIV	GGNNCC	6 cut(s)	57, 198, 231, 414, 507, 532
NmeAIII	GCCGAG	2 cut(s)	258, 516
NmuCI	GTSAC	6 cut(s)	460, 475, 541, 601, 1078, 1138
NspV	TTCGAA	1 cut(s)	1030
PciSI	GCTCTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	8 cut(s)	37, 169, 354, 357, 444, 447, 1026, 1272
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	2 cut(s)	597, 1022
PpsI	GAGTC	2 cut(s)	597, 1022
PshBI	ATTAAT	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	404
Psp6I	CCWGG	2 cut(s)	1036, 1306
PspFI	CCCAGC	3 cut(s)	703, 826, 949
PspGI	CCWGG	2 cut(s)	1036, 1306
PspN4I	GGNNCC	6 cut(s)	57, 198, 231, 414, 507, 532
PspPI	GGNCC	2 cut(s)	505, 1040
PstNI	CAGNNNCTG	3 cut(s)	703, 826, 949
PvuI	CGATCG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	119, 1092, 1248, 1546
SatI	GCNGC	8 cut(s)	36, 168, 353, 356, 443, 446, 1025, 1271
Sau3AI	GATC	2 cut(s)	60, 111
Sau96I	GGNCC	2 cut(s)	505, 1040
SchI	GAGTC	2 cut(s)	598, 1023
ScrFI	CCNGG	7 cut(s)	180, 181, 717, 840, 1038, 1149, 1308
SduI	GDGCHC	9 cut(s)	138, 404, 599, 722, 845, 968, 1076, 1232, 1511
SfaNI	GCATC	4 cut(s)	321, 702, 825, 948
SfuI	TTCGAA	1 cut(s)	1030
SinI	GGWCC	1 cut(s)	505
SmaI	CCCGGG	1 cut(s)	181
Sse9I	AATT	2 cut(s)	17, 1531
SsiI	CCGC	8 cut(s)	53, 168, 347, 356, 437, 446, 961, 1067
SstI	GAGCTC	1 cut(s)	404
StyD4I	CCNGG	7 cut(s)	178, 179, 715, 838, 1036, 1147, 1306
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	8 cut(s)	285, 648, 771, 894, 1017, 1030, 1435, 1457
TasI	AATT	2 cut(s)	17, 1531
TauI	GCSGC	3 cut(s)	170, 358, 448
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	4 cut(s)	119, 1092, 1248, 1546
Tru9I	TTAA	4 cut(s)	119, 1092, 1248, 1546
TscAI	CASTG	5 cut(s)	231, 465, 552, 606, 1117
TseFI	GTSAC	6 cut(s)	460, 475, 541, 601, 1078, 1138
TseI	GCWGC	5 cut(s)	35, 352, 442, 1024, 1270
Tsp45I	GTSAC	6 cut(s)	460, 475, 541, 601, 1078, 1138
TspDTI	ATGAA	3 cut(s)	512, 689, 812
TspGWI	ACGGA	1 cut(s)	1272
TspMI	CCCGGG	1 cut(s)	179
TspRI	CASTG	5 cut(s)	231, 465, 552, 606, 1117
VpaK11BI	GGWCC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	119
XmaI	CCCGGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	285
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.