Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008826

Physical Location & Seq

Genomic Coordinates Reverse (-)

4231172 .. 4234747

Gene Structure 3576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGGGAAAGAAACGCAAATTAGGGCAACGCGAAGCAGCGCAGTCGCAAGTGGCGGAGCCGATCGTTATCTCAGTTGACGACGCCGGAAAGCCTTTCGAACCGTTGAAAGAGATCGGATTAATACAAGCGAATGTGCTCCCAAACCCTAATGAGGTCGCAGTAAACGCCGCAGAACATCCCGGGCAAATCCTCTGGTGCCGGAGATTGAAGGGAAATCCGAACCAGTGGAGCCGAGAAAGAAGAAGAAGAAGAAGAAGCACAAGCCGATTGATACCTGTGCGACGTCGCCGGAAAACCTTTAGAACCGTTAAAAGAGGTCGGATTGATGCAAGCAAATCCGGCGGAGCTGCCGCCCACAAATCCAACATTGAAGCAAAATCCGGAGCAGAACTGAGCTCAAATCCGGTTCCGGAGATTGAAGCAAAACCAGCGGAGCTGCCGCCCCTAAATACAGTGACAAAGGATGGAGTGATATCCGAAGAGCCGAGGATGAATCCGGACCCAAATGTTGAAGCAAAAACTGGAACCGAAGAGGTGACAGTGAAAAAGAAGAAGAAGAACAAGAAGCAGAAGCTAATGGAGAGTCAGAGCACAGTGACAACTTGTGTTGATAATGTGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATGTGCCACTAAAAATGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCAGGGCACAGTCATAACTTGTGTTGATAATGCGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATGTGCCACTAAAAAAGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCCGGGCACAGTCATAACTTGTGTTGATAATGTGGAGAAAAATGGTGAGGCGAAAATCGACGAAGAAGATGTGCCAGTAAAAAGGAAGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGAGGAGATGCCGGGCACAGTCATAACTTGTGTTGATGATGTGGAGAAAAATGGCGAAAATCGACAAGAAGATGTGCCACTAAAAAAGAAGAAGAAGAAGAACAAAAAGCAGAAGCTGGGGGAGATGCCGGGCACAGTCATAACTTGTGTTGATGATGTGGAGAAAAGTGGTGAGGCGAGAGTTGATGGGCAGCTTCGAAAGCCAGGGCCAGTAGTAACAGAGGTGAAGGGGGCGGAGGGCACAGTCACAGCTTGTGTTAATGCTGAAGGGAAAATCAGTGAAGGGGGTGAAGTAGCTGAGCAAGTGACAATGCCGGGGCTAATACAGGCAGTTGGAGTAGTGGAGAATAAGAAGAGTAAGAAGAGGAAAAGGAAAGGGAACAAGGAGATGGAGAGCACAGACATTGCTTGTGTTAATGCTGGAAATGTGGAGCTGCTCCCTGATCCGTTGCCAAATGTGGAAGCAAAGCCCGGGGAGGTGACCCCAAATGCAGATGTGGAAGGGGAATGTAAGAAGGGGAAAAGAAAGAAGAAAAACAAAAGAAAAGGAGCTGAGGAGAACCACTCAAACAATATGTTGAAGTATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

512

Amino Acids

56.58

Weight (kDa)

9.63

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008826)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720
malus_domestica	MD02G1046100.v1.1
prunus_persica	Prupe.7G231900_v2.0.a1 Prupe.7G231900_v2.0.a1
pyrus_communis	pycom02g03860 pycom13g11400
rosa_chinensis	RchiOBHm_Chr2g0090321
rosa_laevigata	RLG00000016098
rosa_roxburghii	Rroxscaffold_2G00151280
rosa_rugosa	Rorug02G0006500
rosa_samantha	Rh2AG052500 Rh2BG051100 Rh2CG053300 Rh2DG052400
rosa_wichuraiana	Rw2G004440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	195
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	3 cut(s)	380, 409, 496
AciI	CCGC	8 cut(s)	53, 168, 342, 351, 431, 440, 740, 1181
AclWI	GGATC	1 cut(s)	1385
AcuI	CTGAAG	1 cut(s)	1233
AcyI	GRCGYC	2 cut(s)	81, 283
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	106, 208, 371, 419, 512, 1528
AjnI	CCWGG	1 cut(s)	1150
Alw21I	GWGCWC	4 cut(s)	138, 398, 593, 1346
AlwI	GGATC	1 cut(s)	1385
AlwNI	CAGNNNCTG	4 cut(s)	697, 820, 946, 1063
Ama87I	CYCGRG	2 cut(s)	179, 1418
Aor13HI	TCCGGA	3 cut(s)	380, 409, 496
AoxI	GGCC	1 cut(s)	1154
ApeKI	GCWGC	5 cut(s)	35, 347, 436, 1138, 1381
AseI	ATTAAT	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	499, 1154
AsuC2I	CCSGG	8 cut(s)	180, 181, 834, 960, 1077, 1263, 1419, 1420
AsuHPI	GGTGA	8 cut(s)	547, 641, 764, 887, 1130, 1183, 1247, 1438
AsuII	TTCGAA	2 cut(s)	96, 1144
AvaI	CYCGRG	2 cut(s)	179, 1418
AvaII	GGWCC	1 cut(s)	499
BaeGI	GKGCMC	5 cut(s)	716, 839, 965, 1082, 1190
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	4 cut(s)	138, 398, 593, 1346
BbvCI	CCTCAGC	1 cut(s)	1500
BbvI	GCAGC	5 cut(s)	47, 334, 423, 1150, 1368
BccI	CCATC	3 cut(s)	458, 1127, 1330
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	1 cut(s)	1152
BcnI	CCSGG	8 cut(s)	180, 181, 834, 960, 1077, 1263, 1419, 1420
BisI	GCNGC	8 cut(s)	36, 168, 348, 351, 437, 440, 1139, 1382
BlpI	GCTNAGC	1 cut(s)	1245
BlsI	GCNGC	8 cut(s)	37, 169, 349, 352, 438, 441, 1140, 1383
Bme1390I	CCNGG	9 cut(s)	180, 181, 834, 960, 1077, 1152, 1263, 1419, 1420
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	2 cut(s)	179, 1418
BmgT120I	GGNCC	2 cut(s)	499, 1154
BmiI	GGNNCC	6 cut(s)	57, 197, 230, 408, 501, 526
BmrFI	CCNGG	9 cut(s)	180, 181, 834, 960, 1077, 1152, 1263, 1419, 1420
BmsI	GCATC	5 cut(s)	316, 696, 819, 945, 1062
BplI	GAGNNNNNCTC	2 cut(s)	1496, 1528
BpmI	CTGGAG	1 cut(s)	968
Bpu10I	CCTNAGC	1 cut(s)	1500
Bpu1102I	GCTNAGC	1 cut(s)	1245
Bpu14I	TTCGAA	2 cut(s)	96, 1144
BpuMI	CCSGG	8 cut(s)	180, 181, 834, 960, 1077, 1263, 1419, 1420
BsaBI	GATNNNNATC	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	81, 283
BsaJI	CCNNGG	6 cut(s)	179, 485, 1151, 1262, 1418, 1419
BsaWI	WCCGGW	4 cut(s)	380, 403, 409, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	4 cut(s)	223, 526, 905, 1157
Bse3DI	GCAATG	1 cut(s)	1350
Bse8I	GATNNNNATC	1 cut(s)	65
BseAI	TCCGGA	3 cut(s)	380, 409, 496
BseBI	CCWGG	1 cut(s)	1152
BseDI	CCNNGG	6 cut(s)	179, 485, 1151, 1262, 1418, 1419
BseGI	GGATG	3 cut(s)	175, 469, 495
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	1350
BseMII	CTCAG	4 cut(s)	84, 383, 1236, 1491
BseNI	ACTGG	4 cut(s)	223, 526, 905, 1157
BseRI	GAGGAG	2 cut(s)	965, 1517
BseSI	GKGCMC	5 cut(s)	716, 839, 965, 1082, 1190
BseXI	GCAGC	5 cut(s)	47, 334, 423, 1150, 1368
BseYI	CCCAGC	3 cut(s)	697, 820, 1063
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	1156
BshNI	GGYRCC	1 cut(s)	195
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	4 cut(s)	138, 398, 593, 1346
BsiHKCI	CYCGRG	2 cut(s)	179, 1418
BslI	CCNNNNNNNGG	1 cut(s)	151
BsnI	GGCC	1 cut(s)	1156
BsoBI	CYCGRG	2 cut(s)	179, 1418
Bsp119I	TTCGAA	2 cut(s)	96, 1144
Bsp1286I	GDGCHC	9 cut(s)	138, 398, 593, 716, 839, 965, 1082, 1190, 1346
Bsp13I	TCCGGA	3 cut(s)	380, 409, 496
Bsp143I	GATC	3 cut(s)	60, 111, 1390
Bsp1720I	GCTNAGC	1 cut(s)	1245
BspACI	CCGC	8 cut(s)	53, 168, 342, 351, 431, 440, 740, 1181
BspANI	GGCC	1 cut(s)	1156
BspCNI	CTCAG	4 cut(s)	83, 384, 1237, 1492
BspEI	TCCGGA	3 cut(s)	380, 409, 496
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	6 cut(s)	57, 197, 230, 408, 501, 526
BspPI	GGATC	1 cut(s)	1385
BspQI	GCTCTTC	1 cut(s)	474
BspT104I	TTCGAA	2 cut(s)	96, 1144
BspT107I	GGYRCC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	1350
BsrI	ACTGG	4 cut(s)	223, 526, 905, 1157
BssECI	CCNNGG	6 cut(s)	179, 485, 1151, 1262, 1418, 1419
BssMI	GATC	3 cut(s)	60, 111, 1390
BssNI	GRCGYC	2 cut(s)	81, 283
Bst2UI	CCWGG	1 cut(s)	1152
Bst6I	CTCTTC	4 cut(s)	474, 525, 1295, 1304
BstACI	GRCGYC	2 cut(s)	81, 283
BstBI	TTCGAA	2 cut(s)	96, 1144
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	4 cut(s)	70, 392, 1245, 1500
BstEII	GGTNACC	1 cut(s)	1426
BstF5I	GGATG	3 cut(s)	175, 469, 495
BstFNI	CGCG	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	63, 114, 1393
BstMBI	GATC	3 cut(s)	60, 111, 1390
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 339, 428, 1147
BstNI	CCWGG	1 cut(s)	1152
BstPI	GGTNACC	1 cut(s)	1426
BstSCI	CCNGG	9 cut(s)	178, 179, 832, 958, 1075, 1150, 1261, 1417, 1418
BstSLI	GKGCMC	5 cut(s)	716, 839, 965, 1082, 1190
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	47, 334, 423, 1150, 1368
BsuRI	GGCC	1 cut(s)	1156
BtsCI	GGATG	3 cut(s)	175, 469, 495
BtsIMutI	CAGTG	5 cut(s)	230, 459, 546, 600, 1231
Cac8I	GCNNGC	1 cut(s)	331
CaiI	CAGNNNCTG	4 cut(s)	697, 820, 946, 1063
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	499, 1154
Cfr9I	CCCGGG	2 cut(s)	179, 1418
CseI	GACGC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	70, 392, 1245, 1500
DpnI	GATC	3 cut(s)	62, 113, 1392
DpnII	GATC	3 cut(s)	60, 111, 1390
Eam1104I	CTCTTC	4 cut(s)	474, 525, 1295, 1304
EarI	CTCTTC	4 cut(s)	474, 525, 1295, 1304
EciI	GGCGGA	3 cut(s)	68, 357, 1196
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	499
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	1233
Eco88I	CYCGRG	2 cut(s)	179, 1418
Eco91I	GGTNACC	1 cut(s)	1426
EcoICRI	GAGCTC	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	1426
EcoRII	CCWGG	1 cut(s)	1150
EcoRV	GATATC	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	398
FaiI	YATR	6 cut(s)	722, 845, 971, 1088, 1523, 1533
Fnu4HI	GCNGC	8 cut(s)	36, 168, 348, 351, 437, 440, 1139, 1382
FokI	GGATG	3 cut(s)	162, 476, 502
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	8 cut(s)	36, 168, 348, 351, 437, 440, 1139, 1382
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	8 cut(s)	36, 168, 348, 351, 437, 440, 1139, 1382
GsaI	CCCAGC	3 cut(s)	701, 824, 1067
GsuI	CTGGAG	1 cut(s)	968
HaeIII	GGCC	1 cut(s)	1156
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	81, 283
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	493, 583
HphI	GGTGA	8 cut(s)	547, 641, 764, 887, 1130, 1183, 1247, 1438
Hpy166II	GTNNAC	2 cut(s)	76, 163
Hpy188I	TCNGA	5 cut(s)	116, 219, 321, 478, 588
Hpy188III	TCNNGA	3 cut(s)	381, 410, 497
Hpy8I	GTNNAC	2 cut(s)	76, 163
Hpy99I	CGWCG	6 cut(s)	83, 285, 288, 647, 770, 893
HpyAV	CCTTC	6 cut(s)	202, 1168, 1208, 1223, 1442, 1456
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	329, 709, 1439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 339, 428, 1147
HpyF3I	CTNAG	4 cut(s)	70, 392, 1245, 1500
HpySE526I	ACGT	1 cut(s)	283
Hsp92I	GRCGYC	2 cut(s)	81, 283
HspAI	GCGC	1 cut(s)	38
Kpn2I	TCCGGA	3 cut(s)	380, 409, 496
Kzo9I	GATC	3 cut(s)	60, 111, 1390
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	9 cut(s)	55, 141, 228, 344, 383, 433, 1378, 1389, 1496
Lsp1109I	GCAGC	5 cut(s)	47, 334, 423, 1150, 1368
LweI	GCATC	5 cut(s)	316, 696, 819, 945, 1062
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	7 cut(s)	454, 535, 595, 1162, 1192, 1252, 1426
MalI	GATC	3 cut(s)	62, 113, 1392
MboI	GATC	3 cut(s)	60, 111, 1390
MhlI	GDGCHC	9 cut(s)	138, 398, 593, 716, 839, 965, 1082, 1190, 1346
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	3 cut(s)	299, 387, 1261
MroI	TCCGGA	3 cut(s)	380, 409, 496
MseI	TTAA	4 cut(s)	119, 309, 1206, 1362
MspA1I	CMGCKG	1 cut(s)	431
MspR9I	CCNGG	9 cut(s)	180, 181, 834, 960, 1077, 1152, 1263, 1419, 1420
MvaI	CCWGG	1 cut(s)	1152
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	4 cut(s)	164, 339, 428, 1147
NciI	CCSGG	8 cut(s)	180, 181, 834, 960, 1077, 1263, 1419, 1420
NdeII	GATC	3 cut(s)	60, 111, 1390
NlaIV	GGNNCC	6 cut(s)	57, 197, 230, 408, 501, 526
NmeAIII	GCCGAG	2 cut(s)	257, 510
NmuCI	GTSAC	6 cut(s)	454, 535, 595, 1192, 1252, 1426
NspV	TTCGAA	2 cut(s)	96, 1144
PciSI	GCTCTTC	1 cut(s)	474
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	8 cut(s)	37, 169, 349, 352, 438, 441, 1140, 1383
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	1150
PspEI	GGTNACC	1 cut(s)	1426
PspFI	CCCAGC	3 cut(s)	697, 820, 1063
PspGI	CCWGG	1 cut(s)	1150
PspN4I	GGNNCC	6 cut(s)	57, 197, 230, 408, 501, 526
PspPI	GGNCC	2 cut(s)	499, 1154
PstNI	CAGNNNCTG	4 cut(s)	697, 820, 946, 1063
PvuI	CGATCG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	4 cut(s)	119, 309, 1206, 1362
SatI	GCNGC	8 cut(s)	36, 168, 348, 351, 437, 440, 1139, 1382
Sau3AI	GATC	3 cut(s)	60, 111, 1390
Sau96I	GGNCC	2 cut(s)	499, 1154
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	9 cut(s)	180, 181, 834, 960, 1077, 1152, 1263, 1419, 1420
SduI	GDGCHC	9 cut(s)	138, 398, 593, 716, 839, 965, 1082, 1190, 1346
SfaNI	GCATC	5 cut(s)	316, 696, 819, 945, 1062
SfuI	TTCGAA	2 cut(s)	96, 1144
SinI	GGWCC	1 cut(s)	499
SmaI	CCCGGG	2 cut(s)	181, 1420
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	8 cut(s)	53, 168, 342, 351, 431, 440, 740, 1181
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	9 cut(s)	178, 179, 832, 958, 1075, 1150, 1261, 1417, 1418
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	6 cut(s)	96, 642, 765, 888, 1009, 1144
TasI	AATT	1 cut(s)	17
TauI	GCSGC	3 cut(s)	170, 353, 442
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	119, 309, 1206, 1362
Tru9I	TTAA	4 cut(s)	119, 309, 1206, 1362
TscAI	CASTG	5 cut(s)	230, 459, 546, 600, 1231
TseFI	GTSAC	6 cut(s)	454, 535, 595, 1192, 1252, 1426
TseI	GCWGC	5 cut(s)	35, 347, 436, 1138, 1381
Tsp45I	GTSAC	6 cut(s)	454, 535, 595, 1192, 1252, 1426
TspDTI	ATGAA	2 cut(s)	506, 683
TspGWI	ACGGA	1 cut(s)	1383
TspMI	CCCGGG	2 cut(s)	179, 1418
TspRI	CASTG	5 cut(s)	230, 459, 546, 600, 1231
VpaK11BI	GGWCC	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	119
XmaI	CCCGGG	2 cut(s)	179, 1418
ZraI	GACGTC	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.