Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008826

Physical Location & Seq

Genomic Coordinates Forward (+)

7826448 .. 7827672

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTATTGTCTCCTTTTTCACTTGGTGCATTTCTTGGAGCTCGTCTTGTTGCTGGGCAGTCCTCTGATTGCTCTGCTGCTCCATGGCACCGCTGATTGTAGCTCTACCGGCGACGGCGTCGACCGACTGAAAGACACAGAAGGAAGTACACGTACAGTTCGGGTCAAGGTGGGATTGGAAAACCCAGTCGTTGATTTGCCGAAATCGATTGAACAAACGGTCCCGAGCAATGAGAAGGCAATCACTGTCCCTGTTGAGGTAGGATTGGGGAATCTAGTTGTTAATGCTGCGAATATTGAAGCCATAGTTCCGAGCAAGAAGAGCAAGAGAAAGAAGAGCAAAACCACAGTCCCGGGATTGGAAAATCCAGTTGCTGATGCGCCAGAAGCAGAGCAGACGGGACTGATTCCGAAGCCTGAGTCGATAGTTCCAGTAACTGCAATCACTGTCCCTGTTGAGGTAGGATTGGGGAATCTAGTTGTTAATGCTGCGAATATTGAAGCCATAGTTCCGAGCAAGAAGAGCAAGAGAAAGAAGAGCAAAACCACAGTCCCGGGATTGGAAAATCCAGTTGCTGATGCGCCAGAAGCAGAGCAGACGGGACTGATTCCGAAGCCTGAGTCGATAGTTCCAGTAACTGTAATTCCCGCATATCTCGCACTTGAATTCCTGACCAAGACCATGAAGCTTATCCAGCCAGTAGGGAATGGGCTTTCCAACCCATTGGCAATTTCAGTGGATTGTAAATCTGCTTCTTCATTCATCTTGGTGGTGCAGCTTTCCGAGAAGTTCTTTCTCTGCTTCACTGATAGTCTGCAAGGTTATTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

278

Amino Acids

29.43

Weight (kDa)

6.34

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008826)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720 FvH4_1g04720
malus_domestica	MD02G1046100.v1.1
prunus_persica	Prupe.7G231900_v2.0.a1 Prupe.7G231900_v2.0.a1
pyrus_communis	pycom02g03860 pycom13g11400
rosa_chinensis	RchiOBHm_Chr2g0090321
rosa_laevigata	RLG00000016098
rosa_roxburghii	Rroxscaffold_2G00151280
rosa_rugosa	Rorug02G0006500
rosa_samantha	Rh2AG052500 Rh2BG051100 Rh2CG053300 Rh2DG052400
rosa_wichuraiana	Rw2G004440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	90, 648
AcsI	RAATTY	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	2 cut(s)	148, 154
AfiI	CCNNNNNNNGG	4 cut(s)	256, 358, 457, 559
AflIII	ACRYGT	1 cut(s)	149
AgsI	TTSAA	4 cut(s)	212, 299, 500, 665
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	4 cut(s)	40, 102, 688, 778
AluI	AGCT	4 cut(s)	40, 102, 688, 778
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	1 cut(s)	14
AlwNI	CAGNNNCTG	4 cut(s)	374, 437, 575, 638
Ama87I	CYCGRG	3 cut(s)	223, 352, 553
ApeKI	GCWGC	4 cut(s)	76, 287, 488, 775
ApoI	RAATTY	1 cut(s)	665
ArsI	GACNNNNNNTTYG	8 cut(s)	333, 365, 404, 436, 534, 566, 605, 637
AspLEI	GCGC	2 cut(s)	382, 583
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	4 cut(s)	353, 354, 554, 555
AvaI	CYCGRG	3 cut(s)	223, 352, 553
AvaII	GGWCC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	4 cut(s)	136, 168, 736, 768
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	63, 274, 475, 787
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	4 cut(s)	353, 354, 554, 555
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	275, 476
BisI	GCNGC	4 cut(s)	77, 288, 489, 776
BlsI	GCNGC	4 cut(s)	78, 289, 490, 777
Bme1390I	CCNGG	4 cut(s)	353, 354, 554, 555
Bme18I	GGWCC	1 cut(s)	220
BmeT110I	CYCGRG	3 cut(s)	223, 352, 553
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	2 cut(s)	88, 222
BmrFI	CCNGG	4 cut(s)	353, 354, 554, 555
BmrI	ACTGGG	1 cut(s)	179
BmsI	GCATC	2 cut(s)	367, 568
BmuI	ACTGGG	1 cut(s)	179
BpuMI	CCSGG	4 cut(s)	353, 354, 554, 555
Bsa29I	ATCGAT	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	3 cut(s)	82, 352, 553
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 358, 457, 559
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	6 cut(s)	185, 368, 431, 569, 632, 698
Bse3DI	GCAATG	1 cut(s)	235
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	82, 352, 553
BseLI	CCNNNNNNNGG	4 cut(s)	256, 358, 457, 559
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	2 cut(s)	408, 609
BseNI	ACTGG	6 cut(s)	185, 368, 431, 569, 632, 698
BseXI	GCAGC	4 cut(s)	63, 274, 475, 787
BseYI	CCCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	794
Bsh1285I	CGRYCG	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	206
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	42
BsiHKCI	CYCGRG	3 cut(s)	223, 352, 553
BsiSI	CCGG	3 cut(s)	108, 353, 554
BslFI	GGGAC	7 cut(s)	206, 233, 335, 414, 434, 536, 615
BslI	CCNNNNNNNGG	4 cut(s)	256, 358, 457, 559
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	7 cut(s)	206, 233, 335, 414, 434, 536, 615
BsoBI	CYCGRG	3 cut(s)	223, 352, 553
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	2 cut(s)	90, 648
BspCNI	CTCAG	2 cut(s)	409, 610
BspDI	ATCGAT	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	88, 222
BspQI	GCTCTTC	4 cut(s)	314, 329, 515, 530
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	6 cut(s)	185, 368, 431, 569, 632, 698
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	3 cut(s)	82, 352, 553
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	7 cut(s)	157, 220, 247, 349, 448, 550, 640
Bst6I	CTCTTC	4 cut(s)	314, 329, 515, 530
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	152
BstDEI	CTNAG	2 cut(s)	417, 618
BstDSI	CCRYGG	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	382, 583
BstMAI	GTCTC	1 cut(s)	14
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 321, 386, 522, 587, 656, 694
BstSCI	CCNGG	4 cut(s)	351, 352, 552, 553
BstV1I	GCAGC	4 cut(s)	63, 274, 475, 787
BstXI	CCANNNNNNTGG	1 cut(s)	724
Bsu15I	ATCGAT	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	82
BtsIMutI	CAGTG	4 cut(s)	243, 444, 741, 804
CaiI	CAGNNNCTG	4 cut(s)	374, 437, 575, 638
CfoI	GCGC	2 cut(s)	382, 583
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	220
Cfr9I	CCCGGG	2 cut(s)	352, 553
ClaI	ATCGAT	1 cut(s)	206
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	147, 153
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	2 cut(s)	83, 682
CviQI	GTAC	2 cut(s)	147, 153
DdeI	CTNAG	2 cut(s)	417, 618
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	4 cut(s)	314, 329, 515, 530
EarI	CTCTTC	4 cut(s)	314, 329, 515, 530
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	40
Eco88I	CYCGRG	3 cut(s)	223, 352, 553
EcoICRI	GAGCTC	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	2 cut(s)	86, 685
FaiI	YATR	5 cut(s)	84, 305, 506, 652, 683
FaqI	GGGAC	7 cut(s)	206, 233, 335, 414, 434, 536, 615
FatI	CATG	2 cut(s)	82, 681
FauI	CCCGC	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	4 cut(s)	77, 288, 489, 776
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	4 cut(s)	77, 288, 489, 776
FspBI	CTAG	2 cut(s)	275, 476
GlaI	GCGC	2 cut(s)	381, 582
GluI	GCNGC	4 cut(s)	77, 288, 489, 776
GsaI	CCCAGC	1 cut(s)	56
HapII	CCGG	3 cut(s)	108, 353, 554
HgaI	GACGC	1 cut(s)	106
HhaI	GCGC	2 cut(s)	382, 583
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	86, 685
Hin6I	GCGC	2 cut(s)	380, 581
HinP1I	GCGC	2 cut(s)	380, 581
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	6 cut(s)	271, 406, 419, 472, 607, 620
HpaII	CCGG	3 cut(s)	108, 353, 554
Hpy166II	GTNNAC	2 cut(s)	121, 149
Hpy188I	TCNGA	6 cut(s)	66, 312, 411, 513, 612, 784
Hpy188III	TCNNGA	2 cut(s)	223, 670
Hpy8I	GTNNAC	2 cut(s)	121, 149
Hpy99I	CGWCG	2 cut(s)	116, 122
HpyAV	CCTTC	2 cut(s)	134, 229
HpyCH4III	ACNGT	7 cut(s)	157, 220, 247, 349, 448, 550, 640
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	28, 440, 775, 817
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 321, 386, 522, 587, 656, 694
HpyF3I	CTNAG	2 cut(s)	417, 618
HpySE526I	ACGT	1 cut(s)	151
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	86, 685
HspAI	GCGC	2 cut(s)	380, 581
LguI	GCTCTTC	4 cut(s)	314, 329, 515, 530
LmnI	GCTCC	2 cut(s)	37, 84
Lsp1109I	GCAGC	4 cut(s)	63, 274, 475, 787
LweI	GCATC	2 cut(s)	367, 568
MaeI	CTAG	2 cut(s)	275, 476
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	433, 634
MboII	GAAGA	5 cut(s)	331, 346, 532, 547, 747
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	642, 665, 729
MlyI	GAGTC	2 cut(s)	428, 629
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	3 cut(s)	72, 250, 451
MseI	TTAA	2 cut(s)	282, 483
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	3 cut(s)	108, 353, 554
MspR9I	CCNGG	4 cut(s)	353, 354, 554, 555
MwoI	GCNNNNNNNGC	7 cut(s)	108, 321, 386, 522, 587, 656, 694
NciI	CCSGG	4 cut(s)	353, 354, 554, 555
NcoI	CCATGG	1 cut(s)	82
NlaIII	CATG	2 cut(s)	86, 685
NlaIV	GGNNCC	2 cut(s)	88, 222
PciSI	GCTCTTC	4 cut(s)	314, 329, 515, 530
PfeI	GAWTC	4 cut(s)	271, 406, 472, 607
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	78, 289, 490, 777
PleI	GAGTC	2 cut(s)	427, 628
PpsI	GAGTC	2 cut(s)	427, 628
Ppu21I	YACGTR	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	88, 222
PspPI	GGNCC	1 cut(s)	220
PstNI	CAGNNNCTG	4 cut(s)	374, 437, 575, 638
PsyI	GACNNNGTC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	148, 154
RsaNI	GTAC	2 cut(s)	147, 153
RseI	CAYNNNNRTG	1 cut(s)	767
SacI	GAGCTC	1 cut(s)	42
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	4 cut(s)	314, 329, 515, 530
SaqAI	TTAA	2 cut(s)	282, 483
SatI	GCNGC	4 cut(s)	77, 288, 489, 776
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	428, 629
ScrFI	CCNGG	4 cut(s)	353, 354, 554, 555
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	9 cut(s)	42, 104, 154, 171, 261, 462, 690, 780, 823
SfaNI	GCATC	2 cut(s)	367, 568
SinI	GGWCC	1 cut(s)	220
SmaI	CCCGGG	2 cut(s)	354, 555
SmiMI	CAYNNNNRTG	1 cut(s)	767
Sse9I	AATT	3 cut(s)	642, 665, 729
SsiI	CCGC	2 cut(s)	90, 648
SspI	AATATT	2 cut(s)	295, 496
SspMI	CTAG	2 cut(s)	275, 476
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	351, 352, 552, 553
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	7 cut(s)	157, 220, 247, 349, 448, 550, 640
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	4 cut(s)	120, 206, 422, 623
TaqII	GACCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	642, 665, 729
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	4 cut(s)	271, 406, 472, 607
Tru1I	TTAA	2 cut(s)	282, 483
Tru9I	TTAA	2 cut(s)	282, 483
TscAI	CASTG	4 cut(s)	250, 451, 741, 811
TseI	GCWGC	4 cut(s)	76, 287, 488, 775
TspDTI	ATGAA	3 cut(s)	698, 747, 751
TspMI	CCCGGG	2 cut(s)	352, 553
TspRI	CASTG	4 cut(s)	250, 451, 741, 811
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	665
XmaI	CCCGGG	2 cut(s)	352, 553
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	275, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.