Clathrin assembly protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g02760 |
| malus_domestica | MD02G1027900.v1.1 MD15G1169600.v1.1 |
| prunus_persica | Prupe.7G246900_v2.0.a1 |
| pyrus_communis | pycom02g02290 pycom15g15120 |
| rosa_chinensis | RchiOBHm_Chr2g0087871 |
| rosa_laevigata | RLG00000015908 |
| rosa_multiflora | Rmu_co8480603.1_g000001 Rmu_sc0008385.1_g000020 Rmu_sc0014136.1_g000015 |
| rosa_roxburghii | Rroxscaffold_2G00153150 |
| rosa_rugosa | Rorug01G0479100 |
| rosa_samantha | Rh2AG033800 Rh2BG033000 Rh2CG033700 Rh2DG033400 |
| rosa_wichuraiana | Rw2G002650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 689 |
| Acc36I | ACCTGC | 1 cut(s) | 689 |
| AccB1I | GGYRCC | 2 cut(s) | 4, 300 |
| AccI | GTMKAC | 1 cut(s) | 812 |
| AclWI | GGATC | 6 cut(s) | 408, 510, 1272, 1285, 1427, 1604 |
| AcoI | YGGCCR | 2 cut(s) | 72, 1752 |
| AcsI | RAATTY | 3 cut(s) | 285, 536, 678 |
| AcvI | CACGTG | 2 cut(s) | 188, 1483 |
| AfaI | GTAC | 5 cut(s) | 152, 607, 639, 941, 1823 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 246, 1144, 1301, 1326, 1538, 1581, 1814 |
| AflIII | ACRYGT | 1 cut(s) | 1480 |
| AgsI | TTSAA | 7 cut(s) | 232, 358, 652, 751, 986, 997, 1447 |
| AjiI | CACGTC | 1 cut(s) | 556 |
| AjnI | CCWGG | 2 cut(s) | 1280, 1813 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1400, 1432 |
| AluBI | AGCT | 7 cut(s) | 140, 886, 970, 978, 1325, 1340, 1388 |
| AluI | AGCT | 7 cut(s) | 140, 886, 970, 978, 1325, 1340, 1388 |
| Alw21I | GWGCWC | 2 cut(s) | 980, 1490 |
| Alw26I | GTCTC | 3 cut(s) | 369, 587, 1376 |
| AlwI | GGATC | 6 cut(s) | 408, 510, 1272, 1285, 1427, 1604 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1343 |
| Ama87I | CYCGRG | 1 cut(s) | 1532 |
| AoxI | GGCC | 7 cut(s) | 72, 114, 626, 692, 1013, 1752, 1786 |
| ApeKI | GCWGC | 3 cut(s) | 1340, 1603, 1711 |
| ApoI | RAATTY | 3 cut(s) | 285, 536, 678 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 90, 122 |
| AspLEI | GCGC | 4 cut(s) | 88, 385, 736, 1834 |
| AspS9I | GGNCC | 4 cut(s) | 43, 91, 1250, 1787 |
| AsuC2I | CCSGG | 6 cut(s) | 76, 409, 928, 944, 1533, 1534 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 1090 |
| AsuII | TTCGAA | 1 cut(s) | 389 |
| AvaI | CYCGRG | 1 cut(s) | 1532 |
| AvaII | GGWCC | 3 cut(s) | 43, 91, 1250 |
| AxyI | CCTNAGG | 1 cut(s) | 1143 |
| BaeGI | GKGCMC | 1 cut(s) | 303 |
| BalI | TGGCCA | 1 cut(s) | 1754 |
| BamHI | GGATCC | 1 cut(s) | 1277 |
| BanI | GGYRCC | 2 cut(s) | 4, 300 |
| BanII | GRGCYC | 1 cut(s) | 980 |
| BbrPI | CACGTG | 2 cut(s) | 188, 1483 |
| BbsI | GAAGAC | 2 cut(s) | 138, 1010 |
| Bbv12I | GWGCWC | 2 cut(s) | 980, 1490 |
| BbvCI | CCTCAGC | 3 cut(s) | 1321, 1794, 1809 |
| BbvI | GCAGC | 3 cut(s) | 1327, 1615, 1723 |
| BccI | CCATC | 5 cut(s) | 290, 814, 1190, 1295, 1660 |
| BciT130I | CCWGG | 2 cut(s) | 1282, 1815 |
| BclI | TGATCA | 2 cut(s) | 562, 1459 |
| BcnI | CCSGG | 6 cut(s) | 76, 409, 928, 944, 1533, 1534 |
| BcoDI | GTCTC | 3 cut(s) | 369, 587, 1376 |
| BfaI | CTAG | 4 cut(s) | 62, 104, 603, 1389 |
| BfmI | CTRYAG | 1 cut(s) | 696 |
| BfoI | RGCGCY | 1 cut(s) | 89 |
| BfuAI | ACCTGC | 1 cut(s) | 689 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 71 |
| BisI | GCNGC | 8 cut(s) | 204, 705, 867, 1341, 1604, 1620, 1712, 1771 |
| BlsI | GCNGC | 8 cut(s) | 205, 706, 868, 1342, 1605, 1621, 1713, 1772 |
| BmcAI | AGTACT | 2 cut(s) | 639, 1823 |
| Bme1390I | CCNGG | 8 cut(s) | 76, 409, 928, 944, 1282, 1533, 1534, 1815 |
| Bme18I | GGWCC | 3 cut(s) | 43, 91, 1250 |
| BmeT110I | CYCGRG | 1 cut(s) | 1532 |
| BmgBI | CACGTC | 1 cut(s) | 556 |
| BmgT120I | GGNCC | 4 cut(s) | 43, 91, 1250, 1787 |
| BmiI | GGNNCC | 3 cut(s) | 6, 302, 1279 |
| BmrFI | CCNGG | 8 cut(s) | 76, 409, 928, 944, 1282, 1533, 1534, 1815 |
| BmrI | ACTGGG | 2 cut(s) | 650, 1372 |
| BmsI | GCATC | 3 cut(s) | 63, 1722, 1794 |
| BmuI | ACTGGG | 2 cut(s) | 650, 1372 |
| BpiI | GAAGAC | 2 cut(s) | 138, 1010 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1321, 1794, 1809 |
| Bpu14I | TTCGAA | 1 cut(s) | 389 |
| BpuEI | CTTGAG | 2 cut(s) | 245, 1296 |
| BpuMI | CCSGG | 6 cut(s) | 76, 409, 928, 944, 1533, 1534 |
| BsaAI | YACGTR | 2 cut(s) | 188, 1483 |
| BsaI | GGTCTC | 1 cut(s) | 587 |
| BsaJI | CCNNGG | 3 cut(s) | 1281, 1532, 1533 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 161, 191, 311, 341, 1102, 1132, 1501, 1531 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 246, 1144, 1301, 1326, 1538, 1581, 1814 |
| Bse1I | ACTGG | 2 cut(s) | 645, 1367 |
| Bse21I | CCTNAGG | 1 cut(s) | 1143 |
| Bse3DI | GCAATG | 2 cut(s) | 1533, 1556 |
| BseBI | CCWGG | 2 cut(s) | 1282, 1815 |
| BseDI | CCNNGG | 3 cut(s) | 1281, 1532, 1533 |
| BseGI | GGATG | 3 cut(s) | 1153, 1198, 1737 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 246, 1144, 1301, 1326, 1538, 1581, 1814 |
| BseMI | GCAATG | 2 cut(s) | 1533, 1556 |
| BseMII | CTCAG | 8 cut(s) | 621, 807, 927, 1335, 1335, 1490, 1808, 1823 |
| BseNI | ACTGG | 2 cut(s) | 645, 1367 |
| BseRI | GAGGAG | 5 cut(s) | 329, 332, 1043, 1104, 1107 |
| BseSI | GKGCMC | 1 cut(s) | 303 |
| BseXI | GCAGC | 3 cut(s) | 1327, 1615, 1723 |
| BseYI | CCCAGC | 3 cut(s) | 8, 136, 1137 |
| Bsh1285I | CGRYCG | 1 cut(s) | 932 |
| BshFI | GGCC | 7 cut(s) | 74, 116, 628, 694, 1015, 1754, 1788 |
| BshNI | GGYRCC | 2 cut(s) | 4, 300 |
| BsiEI | CGRYCG | 1 cut(s) | 932 |
| BsiHKAI | GWGCWC | 2 cut(s) | 980, 1490 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1532 |
| BsiSI | CCGG | 7 cut(s) | 75, 89, 408, 928, 944, 1100, 1533 |
| BslFI | GGGAC | 1 cut(s) | 1597 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 246, 1144, 1301, 1326, 1538, 1581, 1814 |
| BsmAI | GTCTC | 3 cut(s) | 369, 587, 1376 |
| BsmBI | CGTCTC | 1 cut(s) | 369 |
| BsmFI | GGGAC | 1 cut(s) | 1597 |
| BsmI | GAATGC | 3 cut(s) | 385, 397, 1289 |
| BsnI | GGCC | 7 cut(s) | 74, 116, 628, 694, 1015, 1754, 1788 |
| Bso31I | GGTCTC | 1 cut(s) | 587 |
| BsoBI | CYCGRG | 1 cut(s) | 1532 |
| Bsp119I | TTCGAA | 1 cut(s) | 389 |
| Bsp1286I | GDGCHC | 3 cut(s) | 303, 980, 1490 |
| Bsp143I | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| BspANI | GGCC | 7 cut(s) | 74, 116, 628, 694, 1015, 1754, 1788 |
| BspCNI | CTCAG | 8 cut(s) | 622, 808, 928, 1334, 1336, 1491, 1807, 1822 |
| BspLI | GGNNCC | 3 cut(s) | 6, 302, 1279 |
| BspMAI | CTGCAG | 1 cut(s) | 700 |
| BspMI | ACCTGC | 1 cut(s) | 689 |
| BspPI | GGATC | 6 cut(s) | 408, 510, 1272, 1285, 1427, 1604 |
| BspQI | GCTCTTC | 1 cut(s) | 1095 |
| BspT104I | TTCGAA | 1 cut(s) | 389 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 300 |
| BspTNI | GGTCTC | 1 cut(s) | 587 |
| BsrDI | GCAATG | 2 cut(s) | 1533, 1556 |
| BsrI | ACTGG | 2 cut(s) | 645, 1367 |
| BssECI | CCNNGG | 3 cut(s) | 1281, 1532, 1533 |
| BssMI | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| BssNAI | GTATAC | 1 cut(s) | 813 |
| Bst1107I | GTATAC | 1 cut(s) | 813 |
| Bst2UI | CCWGG | 2 cut(s) | 1282, 1815 |
| Bst4CI | ACNGT | 1 cut(s) | 1588 |
| Bst6I | CTCTTC | 2 cut(s) | 1095, 1717 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1684 |
| BstBAI | YACGTR | 2 cut(s) | 188, 1483 |
| BstBI | TTCGAA | 1 cut(s) | 389 |
| BstC8I | GCNNGC | 6 cut(s) | 347, 696, 1540, 1563, 1572, 1593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| BstF5I | GGATG | 3 cut(s) | 1153, 1198, 1737 |
| BstH2I | RGCGCY | 1 cut(s) | 89 |
| BstHHI | GCGC | 4 cut(s) | 88, 385, 736, 1834 |
| BstKTI | GATC | 9 cut(s) | 165, 403, 505, 565, 676, 1280, 1435, 1462, 1612 |
| BstMAI | GTCTC | 3 cut(s) | 369, 587, 1376 |
| BstMBI | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| BstMCI | CGRYCG | 1 cut(s) | 932 |
| BstNI | CCWGG | 2 cut(s) | 1282, 1815 |
| BstNSI | RCATGY | 2 cut(s) | 349, 1456 |
| BstSCI | CCNGG | 8 cut(s) | 74, 407, 926, 942, 1280, 1531, 1532, 1813 |
| BstSFI | CTRYAG | 1 cut(s) | 696 |
| BstSLI | GKGCMC | 1 cut(s) | 303 |
| BstV1I | GCAGC | 3 cut(s) | 1327, 1615, 1723 |
| BstV2I | GAAGAC | 2 cut(s) | 138, 1010 |
| BstX2I | RGATCY | 2 cut(s) | 1277, 1609 |
| BstYI | RGATCY | 2 cut(s) | 1277, 1609 |
| BstZ17I | GTATAC | 1 cut(s) | 813 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1143 |
| BsuRI | GGCC | 7 cut(s) | 74, 116, 628, 694, 1015, 1754, 1788 |
| BtgZI | GCGATG | 1 cut(s) | 443 |
| BtrI | CACGTC | 1 cut(s) | 556 |
| BtsCI | GGATG | 3 cut(s) | 1153, 1198, 1737 |
| BtsI | GCAGTG | 4 cut(s) | 198, 1476, 1602, 1638 |
| BtsIMutI | CAGTG | 5 cut(s) | 198, 1476, 1593, 1602, 1638 |
| BveI | ACCTGC | 1 cut(s) | 689 |
| Cac8I | GCNNGC | 6 cut(s) | 347, 696, 1540, 1563, 1572, 1593 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1343 |
| CfoI | GCGC | 4 cut(s) | 88, 385, 736, 1834 |
| Cfr13I | GGNCC | 4 cut(s) | 43, 91, 1250, 1787 |
| Cfr9I | CCCGGG | 1 cut(s) | 1532 |
| Csp6I | GTAC | 5 cut(s) | 151, 606, 638, 940, 1822 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1503, 1538 |
| CviAII | CATG | 4 cut(s) | 242, 346, 404, 1453 |
| CviQI | GTAC | 5 cut(s) | 151, 606, 638, 940, 1822 |
| DpnI | GATC | 9 cut(s) | 164, 402, 504, 564, 675, 1279, 1434, 1461, 1611 |
| DpnII | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| EaeI | YGGCCR | 2 cut(s) | 72, 1752 |
| Eam1104I | CTCTTC | 2 cut(s) | 1095, 1717 |
| EarI | CTCTTC | 2 cut(s) | 1095, 1717 |
| EciI | GGCGGA | 1 cut(s) | 1086 |
| Ecl136II | GAGCTC | 1 cut(s) | 978 |
| Eco147I | AGGCCT | 2 cut(s) | 628, 694 |
| Eco24I | GRGCYC | 1 cut(s) | 980 |
| Eco31I | GGTCTC | 1 cut(s) | 587 |
| Eco47I | GGWCC | 3 cut(s) | 43, 91, 1250 |
| Eco53kI | GAGCTC | 1 cut(s) | 978 |
| Eco72I | CACGTG | 2 cut(s) | 188, 1483 |
| Eco81I | CCTNAGG | 1 cut(s) | 1143 |
| Eco88I | CYCGRG | 1 cut(s) | 1532 |
| EcoICRI | GAGCTC | 1 cut(s) | 978 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| EcoRII | CCWGG | 2 cut(s) | 1280, 1813 |
| EcoT38I | GRGCYC | 1 cut(s) | 980 |
| Esp3I | CGTCTC | 1 cut(s) | 369 |
| FaeI | CATG | 4 cut(s) | 245, 349, 407, 1456 |
| FaqI | GGGAC | 1 cut(s) | 1597 |
| FatI | CATG | 4 cut(s) | 241, 345, 403, 1452 |
| FauI | CCCGC | 2 cut(s) | 342, 1131 |
| FauNDI | CATATG | 1 cut(s) | 1648 |
| FbaI | TGATCA | 2 cut(s) | 562, 1459 |
| FblI | GTMKAC | 1 cut(s) | 812 |
| Fnu4HI | GCNGC | 8 cut(s) | 204, 705, 867, 1341, 1604, 1620, 1712, 1771 |
| FokI | GGATG | 3 cut(s) | 1140, 1205, 1744 |
| FriOI | GRGCYC | 1 cut(s) | 980 |
| Fsp4HI | GCNGC | 8 cut(s) | 204, 705, 867, 1341, 1604, 1620, 1712, 1771 |
| FspBI | CTAG | 4 cut(s) | 62, 104, 603, 1389 |
| GlaI | GCGC | 4 cut(s) | 87, 384, 735, 1833 |
| GluI | GCNGC | 8 cut(s) | 204, 705, 867, 1341, 1604, 1620, 1712, 1771 |
| GsaI | CCCAGC | 3 cut(s) | 12, 140, 1141 |
| HaeII | RGCGCY | 1 cut(s) | 89 |
| HaeIII | GGCC | 7 cut(s) | 74, 116, 628, 694, 1015, 1754, 1788 |
| HapII | CCGG | 7 cut(s) | 75, 89, 408, 928, 944, 1100, 1533 |
| HhaI | GCGC | 4 cut(s) | 88, 385, 736, 1834 |
| Hin1II | CATG | 4 cut(s) | 245, 349, 407, 1456 |
| Hin6I | GCGC | 4 cut(s) | 86, 383, 734, 1832 |
| HinP1I | GCGC | 4 cut(s) | 86, 383, 734, 1832 |
| HindIII | AAGCTT | 1 cut(s) | 968 |
| HpaII | CCGG | 7 cut(s) | 75, 89, 408, 928, 944, 1100, 1533 |
| HphI | GGTGA | 2 cut(s) | 736, 1090 |
| Hpy166II | GTNNAC | 2 cut(s) | 280, 813 |
| Hpy188I | TCNGA | 5 cut(s) | 367, 937, 954, 1300, 1656 |
| Hpy188III | TCNNGA | 7 cut(s) | 437, 477, 506, 521, 671, 994, 1248 |
| Hpy8I | GTNNAC | 2 cut(s) | 280, 813 |
| HpyCH4III | ACNGT | 1 cut(s) | 1588 |
| HpyCH4IV | ACGT | 3 cut(s) | 187, 555, 1482 |
| HpyCH4V | TGCA | 5 cut(s) | 332, 698, 1514, 1591, 1735 |
| HpySE526I | ACGT | 3 cut(s) | 187, 555, 1482 |
| Hsp92II | CATG | 4 cut(s) | 245, 349, 407, 1456 |
| HspAI | GCGC | 4 cut(s) | 86, 383, 734, 1832 |
| Ksp22I | TGATCA | 2 cut(s) | 562, 1459 |
| Kzo9I | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| LguI | GCTCTTC | 1 cut(s) | 1095 |
| LmnI | GCTCC | 1 cut(s) | 1466 |
| Lsp1109I | GCAGC | 3 cut(s) | 1327, 1615, 1723 |
| LweI | GCATC | 3 cut(s) | 63, 1722, 1794 |
| MaeI | CTAG | 4 cut(s) | 62, 104, 603, 1389 |
| MaeII | ACGT | 3 cut(s) | 187, 555, 1482 |
| MaeIII | GTNAC | 4 cut(s) | 196, 1165, 1315, 1549 |
| MalI | GATC | 9 cut(s) | 164, 402, 504, 564, 675, 1279, 1434, 1461, 1611 |
| MboI | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| MboII | GAAGA | 5 cut(s) | 143, 1015, 1082, 1734, 1755 |
| MfeI | CAATTG | 1 cut(s) | 27 |
| MflI | RGATCY | 2 cut(s) | 1277, 1609 |
| MhlI | GDGCHC | 3 cut(s) | 303, 980, 1490 |
| MlsI | TGGCCA | 1 cut(s) | 1754 |
| MluNI | TGGCCA | 1 cut(s) | 1754 |
| MmeI | TCCRAC | 1 cut(s) | 783 |
| Mox20I | TGGCCA | 1 cut(s) | 1754 |
| MscI | TGGCCA | 1 cut(s) | 1754 |
| MseI | TTAA | 3 cut(s) | 111, 840, 861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| Msp20I | TGGCCA | 1 cut(s) | 1754 |
| MspA1I | CMGCKG | 2 cut(s) | 140, 1340 |
| MspI | CCGG | 7 cut(s) | 75, 89, 408, 928, 944, 1100, 1533 |
| MspR9I | CCNGG | 8 cut(s) | 76, 409, 928, 944, 1282, 1533, 1534, 1815 |
| MunI | CAATTG | 1 cut(s) | 27 |
| Mva1269I | GAATGC | 3 cut(s) | 385, 397, 1289 |
| MvaI | CCWGG | 2 cut(s) | 1282, 1815 |
| NciI | CCSGG | 6 cut(s) | 76, 409, 928, 944, 1533, 1534 |
| NdeI | CATATG | 1 cut(s) | 1648 |
| NdeII | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| NlaIII | CATG | 4 cut(s) | 245, 349, 407, 1456 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 302, 1279 |
| NmuCI | GTSAC | 3 cut(s) | 196, 1165, 1315 |
| NspI | RCATGY | 2 cut(s) | 349, 1456 |
| NspV | TTCGAA | 1 cut(s) | 389 |
| PaeI | GCATGC | 1 cut(s) | 349 |
| PaqCI | CACCTGC | 1 cut(s) | 689 |
| PceI | AGGCCT | 2 cut(s) | 628, 694 |
| PciSI | GCTCTTC | 1 cut(s) | 1095 |
| PctI | GAATGC | 3 cut(s) | 385, 397, 1289 |
| PflFI | GACNNNGTC | 2 cut(s) | 598, 1178 |
| PkrI | GCNGC | 8 cut(s) | 205, 706, 868, 1342, 1605, 1621, 1713, 1772 |
| PmaCI | CACGTG | 2 cut(s) | 188, 1483 |
| PmlI | CACGTG | 2 cut(s) | 188, 1483 |
| Ppu21I | YACGTR | 2 cut(s) | 188, 1483 |
| Psp124BI | GAGCTC | 1 cut(s) | 980 |
| Psp6I | CCWGG | 2 cut(s) | 1280, 1813 |
| PspCI | CACGTG | 2 cut(s) | 188, 1483 |
| PspFI | CCCAGC | 3 cut(s) | 8, 136, 1137 |
| PspGI | CCWGG | 2 cut(s) | 1280, 1813 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 302, 1279 |
| PspPI | GGNCC | 4 cut(s) | 43, 91, 1250, 1787 |
| PstI | CTGCAG | 1 cut(s) | 700 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1343 |
| PsuI | RGATCY | 2 cut(s) | 1277, 1609 |
| PsyI | GACNNNGTC | 2 cut(s) | 598, 1178 |
| PvuII | CAGCTG | 2 cut(s) | 140, 1340 |
| RsaI | GTAC | 5 cut(s) | 152, 607, 639, 941, 1823 |
| RsaNI | GTAC | 5 cut(s) | 151, 606, 638, 940, 1822 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SacI | GAGCTC | 1 cut(s) | 980 |
| SapI | GCTCTTC | 1 cut(s) | 1095 |
| SaqAI | TTAA | 3 cut(s) | 111, 840, 861 |
| SatI | GCNGC | 8 cut(s) | 204, 705, 867, 1341, 1604, 1620, 1712, 1771 |
| Sau3AI | GATC | 9 cut(s) | 162, 400, 502, 562, 673, 1277, 1432, 1459, 1609 |
| Sau96I | GGNCC | 4 cut(s) | 43, 91, 1250, 1787 |
| SbfI | CCTGCAGG | 1 cut(s) | 700 |
| ScaI | AGTACT | 2 cut(s) | 639, 1823 |
| ScrFI | CCNGG | 8 cut(s) | 76, 409, 928, 944, 1282, 1533, 1534, 1815 |
| SdaI | CCTGCAGG | 1 cut(s) | 700 |
| SduI | GDGCHC | 3 cut(s) | 303, 980, 1490 |
| SfaNI | GCATC | 3 cut(s) | 63, 1722, 1794 |
| SfcI | CTRYAG | 1 cut(s) | 696 |
| SfuI | TTCGAA | 1 cut(s) | 389 |
| SinI | GGWCC | 3 cut(s) | 43, 91, 1250 |
| SmaI | CCCGGG | 1 cut(s) | 1534 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 2 cut(s) | 260, 1311 |
| SmoI | CTYRAG | 2 cut(s) | 260, 1311 |
| SphI | GCATGC | 1 cut(s) | 349 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 700 |
| SseBI | AGGCCT | 2 cut(s) | 628, 694 |
| SspI | AATATT | 1 cut(s) | 1682 |
| SspMI | CTAG | 4 cut(s) | 62, 104, 603, 1389 |
| SstI | GAGCTC | 1 cut(s) | 980 |
| StuI | AGGCCT | 2 cut(s) | 628, 694 |
| StyD4I | CCNGG | 8 cut(s) | 74, 407, 926, 942, 1280, 1531, 1532, 1813 |
| TaaI | ACNGT | 1 cut(s) | 1588 |
| TaiI | ACGT | 3 cut(s) | 190, 558, 1485 |
| TaqI | TCGA | 4 cut(s) | 96, 389, 520, 676 |
| TatI | WGTACW | 3 cut(s) | 150, 637, 1821 |
| TauI | GCSGC | 5 cut(s) | 206, 707, 869, 1622, 1773 |
| Tru1I | TTAA | 3 cut(s) | 111, 840, 861 |
| Tru9I | TTAA | 3 cut(s) | 111, 840, 861 |
| TscAI | CASTG | 5 cut(s) | 205, 1476, 1593, 1602, 1638 |
| TseFI | GTSAC | 3 cut(s) | 196, 1165, 1315 |
| TseI | GCWGC | 3 cut(s) | 1340, 1603, 1711 |
| Tsp45I | GTSAC | 3 cut(s) | 196, 1165, 1315 |
| TspDTI | ATGAA | 4 cut(s) | 144, 1082, 1097, 1635 |
| TspGWI | ACGGA | 1 cut(s) | 1602 |
| TspMI | CCCGGG | 1 cut(s) | 1532 |
| TspRI | CASTG | 5 cut(s) | 205, 1476, 1593, 1602, 1638 |
| Tth111I | GACNNNGTC | 2 cut(s) | 598, 1178 |
| VpaK11BI | GGWCC | 3 cut(s) | 43, 91, 1250 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1812 |
| XapI | RAATTY | 3 cut(s) | 285, 536, 678 |
| XceI | RCATGY | 2 cut(s) | 349, 1456 |
| XmaI | CCCGGG | 1 cut(s) | 1532 |
| XmiI | GTMKAC | 1 cut(s) | 812 |
| XspI | CTAG | 4 cut(s) | 62, 104, 603, 1389 |
| ZrmI | AGTACT | 2 cut(s) | 639, 1823 |