Rmu_co8480603.1_g000001

Clathrin assembly protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8480603.1
Physical Location & Seq
Forward (+)
849 .. 2224
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8480603.1_g000001.1.cds

Sequence Viewer

Length: 1376 bp
atgtcaacgagcaccattcgcaaggcgatcggtgccgtgaaggatcagaccagcattagcctggcgaaggtggccggcacgatcgcaccggacttggaagttctggtggtgaaggccaccacccacgacgaggacccggccgacgacaagtacatccgggagatcgtcggcctgacgtcacactcgcgcgggtacgtgacggcggcggtggcgacgatttcgaagcggctgagcaaaacccacgactggattgtggcgctgaaggctctgatgctggtgcacaggctgctgatcgacggccacgcgctgttcgaggaggagattgtgcacgcggcgaggagggggatgagggttttgaacatggcggagtttcgggacgaggcgcattcgaattcgtgggatcatgctgggtttgtgaggtgttatggtatgtatttggatgagaaggtggagtttgaggtggtggagaggaagtcgaggggtgtggataataggtttgaggagaaggagagcgagtttgagtatggaatgaggcgtgcgaggtcgagtgagtcgttggagagaaaagagggcactccggttagggaaatgaggccggagagagtgttgggaaggttgaatgatctgttgagggttctcgacagagttttgggttgtaggccggcgggtatggccaagactagtaggttggtgattgtcgcgctttatggggttgtgaaggagagttttaggctgtatgtggagatatgtgaggcgttgggggttttgttggataggtttggggagatggagtacggggactgtgtgaaggcgtttgatgtttatgttaatgcggccaagatgattgatgagctgttgttgttttataattggtgcaaggatatggggattgcgaggacgtctgagtacccggaggtgctgagaataactgataagcttttggggacactggagggttacttgaaggagaagacaaataggccaaagagtacacctgagagggaggagagggtttatgttgatgaggaggtgaaacagaatgtgaatgagatcaaggctcttcctgcaccggagagtttcactcctactcctcctccgccagcacctgttgcgcagcctaagccggcttcacagcctcagagggtgactgatgagttggtgaatttgagggatgatggagttacagttgatgagcaaggaaacaagttggctttggcattgttctctggacctcctactactaatccaaatgggtcctgggaagcgtttgattcaaatggagagcctgaagtgacctcagcgtggcagacgccggctgctgacagcggtaaagcagattgggaattggcattggttgaaacagctagtaatctgtc
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

459

Amino Acids

51.33

Weight (kDa)

5.29

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 867
AatII GACGTC 2 cut(s) 179, 902
Acc16I TGCGCA 1 cut(s) 1113
AccB1I GGYRCC 1 cut(s) 32
AccII CGCG 5 cut(s) 187, 189, 305, 332, 701
AclWI GGATC 2 cut(s) 51, 408
AcoI YGGCCR 5 cut(s) 72, 138, 298, 672, 834
AcsI RAATTY 2 cut(s) 391, 1162
AcuI CTGAAG 2 cut(s) 281, 1308
AcyI GRCGYC 3 cut(s) 176, 899, 1310
AfaI GTAC 5 cut(s) 152, 194, 794, 908, 991
AfiI CCNNNNNNNGG 4 cut(s) 67, 130, 246, 1302
AgsI TTSAA 5 cut(s) 358, 619, 964, 1275, 1358
AhlI ACTAGT 1 cut(s) 680
AjnI CCWGG 2 cut(s) 60, 1256
AluBI AGCT 3 cut(s) 853, 937, 1364
AluI AGCT 3 cut(s) 853, 937, 1364
Alw21I GWGCWC 3 cut(s) 14, 282, 330
Alw44I GTGCAC 2 cut(s) 278, 326
AlwI GGATC 2 cut(s) 51, 408
AlwNI CAGNNNCTG 1 cut(s) 1106
ApaLI GTGCAC 2 cut(s) 278, 326
ApeKI GCWGC 3 cut(s) 286, 1114, 1316
ApoI RAATTY 2 cut(s) 391, 1162
AspLEI GCGC 6 cut(s) 189, 259, 307, 385, 703, 1114
AspS9I GGNCC 3 cut(s) 133, 1229, 1254
AsuC2I CCSGG 3 cut(s) 137, 158, 911
AsuHPI GGTGA 5 cut(s) 121, 703, 1042, 1156, 1171
AsuII TTCGAA 2 cut(s) 221, 389
AvaII GGWCC 3 cut(s) 133, 1229, 1254
BaeGI GKGCMC 3 cut(s) 282, 330, 575
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 977
Bbv12I GWGCWC 3 cut(s) 14, 282, 330
BbvCI CCTCAGC 1 cut(s) 1297
BbvI GCAGC 3 cut(s) 273, 1126, 1303
BccI CCATC 2 cut(s) 781, 1169
BceAI ACGGC 3 cut(s) 20, 216, 313
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BciT130I CCWGG 2 cut(s) 62, 1258
BcnI CCSGG 3 cut(s) 137, 158, 911
BcuI ACTAGT 1 cut(s) 680
BfaI CTAG 2 cut(s) 681, 1365
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 7 cut(s) 204, 227, 287, 333, 834, 1115, 1317
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 7 cut(s) 205, 228, 288, 334, 835, 1116, 1318
Bme1390I CCNGG 5 cut(s) 62, 137, 158, 911, 1258
Bme18I GGWCC 3 cut(s) 133, 1229, 1254
BmgT120I GGNCC 3 cut(s) 133, 1229, 1254
BmiI GGNNCC 3 cut(s) 34, 135, 1255
BmrFI CCNGG 5 cut(s) 62, 137, 158, 911, 1258
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 977
BplI GAGNNNNNCTC 2 cut(s) 1066, 1098
BpmI CTGGAG 1 cut(s) 971
Bpu10I CCTNAGC 2 cut(s) 1119, 1297
Bpu1102I GCTNAGC 1 cut(s) 230
Bpu14I TTCGAA 2 cut(s) 221, 389
BpuMI CCSGG 3 cut(s) 137, 158, 911
BsaAI YACGTR 1 cut(s) 196
BsaHI GRCGYC 3 cut(s) 176, 899, 1310
BsaJI CCNNGG 1 cut(s) 1257
BsaWI WCCGGW 3 cut(s) 88, 577, 1069
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 130, 246, 1302
Bse118I RCCGGY 4 cut(s) 74, 661, 1123, 1312
Bse1I ACTGG 2 cut(s) 251, 954
BseBI CCWGG 2 cut(s) 62, 1258
BseDI CCNNGG 1 cut(s) 1257
BseGI GGATG 4 cut(s) 153, 351, 445, 1177
BseLI CCNNNNNNNGG 4 cut(s) 67, 130, 246, 1302
BseMII CTCAG 6 cut(s) 221, 894, 911, 987, 1151, 1311
BseNI ACTGG 2 cut(s) 251, 954
BseRI GAGGAG 8 cut(s) 329, 332, 352, 515, 1019, 1040, 1080, 1083
BseSI GKGCMC 3 cut(s) 282, 330, 575
BseX3I CGGCCG 1 cut(s) 138
BseXI GCAGC 3 cut(s) 273, 1126, 1303
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 1 cut(s) 1050
Bsh1236I CGCG 5 cut(s) 187, 189, 305, 332, 701
Bsh1285I CGRYCG 3 cut(s) 30, 84, 141
BshNI GGYRCC 1 cut(s) 32
BsiEI CGRYCG 3 cut(s) 30, 84, 141
BsiHKAI GWGCWC 3 cut(s) 14, 282, 330
BslFI GGGAC 3 cut(s) 389, 812, 958
BslI CCNNNNNNNGG 4 cut(s) 67, 130, 246, 1302
BsmFI GGGAC 3 cut(s) 389, 812, 958
BsmI GAATGC 1 cut(s) 385
Bsp119I TTCGAA 2 cut(s) 221, 389
Bsp1286I GDGCHC 4 cut(s) 14, 282, 330, 575
Bsp143I GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
Bsp1720I GCTNAGC 1 cut(s) 230
BspCNI CTCAG 6 cut(s) 222, 895, 912, 988, 1150, 1310
BspFNI CGCG 5 cut(s) 187, 189, 305, 332, 701
BspLI GGNNCC 3 cut(s) 34, 135, 1255
BspPI GGATC 2 cut(s) 51, 408
BspQI GCTCTTC 1 cut(s) 1065
BspT104I TTCGAA 2 cut(s) 221, 389
BspT107I GGYRCC 1 cut(s) 32
BsrFI RCCGGY 4 cut(s) 74, 661, 1123, 1312
BsrI ACTGG 2 cut(s) 251, 954
BssAI RCCGGY 4 cut(s) 74, 661, 1123, 1312
BssECI CCNNGG 1 cut(s) 1257
BssMI GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
BssNI GRCGYC 3 cut(s) 176, 899, 1310
Bst2UI CCWGG 2 cut(s) 62, 1258
Bst4CI ACNGT 2 cut(s) 803, 1186
Bst6I CTCTTC 1 cut(s) 1065
BstACI GRCGYC 3 cut(s) 176, 899, 1310
BstAPI GCANNNNNTGC 2 cut(s) 286, 1109
BstBAI YACGTR 1 cut(s) 196
BstBI TTCGAA 2 cut(s) 221, 389
BstC8I GCNNGC 7 cut(s) 76, 330, 537, 663, 1101, 1125, 1314
BstDEI CTNAG 7 cut(s) 230, 903, 920, 996, 1119, 1137, 1297
BstENI CCTNNNNNAGG 1 cut(s) 65
BstF5I GGATG 4 cut(s) 153, 351, 445, 1177
BstFNI CGCG 5 cut(s) 187, 189, 305, 332, 701
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 6 cut(s) 189, 259, 307, 385, 703, 1114
BstKTI GATC 8 cut(s) 30, 46, 84, 165, 294, 403, 625, 1053
BstMBI GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
BstMCI CGRYCG 3 cut(s) 30, 84, 141
BstNI CCWGG 2 cut(s) 62, 1258
BstSCI CCNGG 5 cut(s) 60, 135, 156, 909, 1256
BstSLI GKGCMC 3 cut(s) 282, 330, 575
BstUI CGCG 5 cut(s) 187, 189, 305, 332, 701
BstV1I GCAGC 3 cut(s) 273, 1126, 1303
BstV2I GAAGAC 1 cut(s) 977
BstZI CGGCCG 1 cut(s) 138
BtsCI GGATG 4 cut(s) 153, 351, 445, 1177
BtsIMutI CAGTG 1 cut(s) 947
Cac8I GCNNGC 7 cut(s) 76, 330, 537, 663, 1101, 1125, 1314
CaiI CAGNNNCTG 1 cut(s) 1106
CfoI GCGC 6 cut(s) 189, 259, 307, 385, 703, 1114
Cfr10I RCCGGY 4 cut(s) 74, 661, 1123, 1312
Cfr13I GGNCC 3 cut(s) 133, 1229, 1254
CseI GACGC 1 cut(s) 1318
Csp6I GTAC 5 cut(s) 151, 193, 793, 907, 990
CviAII CATG 2 cut(s) 361, 404
CviQI GTAC 5 cut(s) 151, 193, 793, 907, 990
DdeI CTNAG 7 cut(s) 230, 903, 920, 996, 1119, 1137, 1297
DpnI GATC 8 cut(s) 29, 45, 83, 164, 293, 402, 624, 1052
DpnII GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
EaeI YGGCCR 5 cut(s) 72, 138, 298, 672, 834
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 1065
EarI CTCTTC 1 cut(s) 1065
EciI GGCGGA 2 cut(s) 380, 1086
EclXI CGGCCG 1 cut(s) 138
Eco47I GGWCC 3 cut(s) 133, 1229, 1254
Eco52I CGGCCG 1 cut(s) 138
Eco57I CTGAAG 2 cut(s) 281, 1308
EcoNI CCTNNNNNAGG 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 133, 1254
EcoRI GAATTC 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 60, 1256
FaeI CATG 2 cut(s) 364, 407
FaqI GGGAC 3 cut(s) 389, 812, 958
FatI CATG 2 cut(s) 360, 403
FauI CCCGC 2 cut(s) 182, 658
Fnu4HI GCNGC 7 cut(s) 204, 227, 287, 333, 834, 1115, 1317
FokI GGATG 4 cut(s) 140, 358, 452, 1184
Fsp4HI GCNGC 7 cut(s) 204, 227, 287, 333, 834, 1115, 1317
FspBI CTAG 2 cut(s) 681, 1365
FspI TGCGCA 1 cut(s) 1113
GlaI GCGC 6 cut(s) 188, 258, 306, 384, 702, 1113
GluI GCNGC 7 cut(s) 204, 227, 287, 333, 834, 1115, 1317
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 971
HaeII RGCGCY 1 cut(s) 260
HgaI GACGC 1 cut(s) 1318
HhaI GCGC 6 cut(s) 189, 259, 307, 385, 703, 1114
Hin1I GRCGYC 3 cut(s) 176, 899, 1310
Hin1II CATG 2 cut(s) 364, 407
Hin6I GCGC 6 cut(s) 187, 257, 305, 383, 701, 1112
HinP1I GCGC 6 cut(s) 187, 257, 305, 383, 701, 1112
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 935
HinfI GANTC 2 cut(s) 551, 1271
HphI GGTGA 5 cut(s) 121, 703, 1042, 1156, 1171
Hpy166II GTNNAC 4 cut(s) 6, 280, 328, 992
Hpy188I TCNGA 4 cut(s) 48, 270, 904, 1140
Hpy188III TCNNGA 3 cut(s) 374, 638, 1227
Hpy8I GTNNAC 4 cut(s) 6, 280, 328, 992
Hpy99I CGWCG 5 cut(s) 131, 146, 170, 217, 299
HpyCH4III ACNGT 2 cut(s) 803, 1186
HpyCH4IV ACGT 3 cut(s) 176, 195, 899
HpyCH4V TGCA 4 cut(s) 280, 328, 876, 1067
HpyF3I CTNAG 7 cut(s) 230, 903, 920, 996, 1119, 1137, 1297
HpySE526I ACGT 3 cut(s) 176, 195, 899
Hsp92I GRCGYC 3 cut(s) 176, 899, 1310
Hsp92II CATG 2 cut(s) 364, 407
HspAI GCGC 6 cut(s) 187, 257, 305, 383, 701, 1112
KroI GCCGGC 4 cut(s) 74, 661, 1123, 1312
KroNI GCCGGC 4 cut(s) 76, 663, 1125, 1314
Kzo9I GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
LguI GCTCTTC 1 cut(s) 1065
Lsp1109I GCAGC 3 cut(s) 273, 1126, 1303
LweI GCATC 1 cut(s) 261
MaeI CTAG 2 cut(s) 681, 1365
MaeII ACGT 3 cut(s) 176, 195, 899
MaeIII GTNAC 6 cut(s) 177, 196, 956, 1144, 1180, 1291
MalI GATC 8 cut(s) 29, 45, 83, 164, 293, 402, 624, 1052
MboI GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
MboII GAAGA 2 cut(s) 982, 1052
MhlI GDGCHC 4 cut(s) 14, 282, 330, 575
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 4 cut(s) 391, 868, 1162, 1343
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 2 cut(s) 537, 750
Mox20I TGGCCA 1 cut(s) 674
MroNI GCCGGC 4 cut(s) 74, 661, 1123, 1312
MscI TGGCCA 1 cut(s) 674
MseI TTAA 1 cut(s) 828
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 1326
MspR9I CCNGG 5 cut(s) 62, 137, 158, 911, 1258
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 2 cut(s) 62, 1258
MvnI CGCG 5 cut(s) 187, 189, 305, 332, 701
NaeI GCCGGC 4 cut(s) 76, 663, 1125, 1314
NciI CCSGG 3 cut(s) 137, 158, 911
NdeII GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
NgoMIV GCCGGC 4 cut(s) 74, 661, 1123, 1312
NlaIII CATG 2 cut(s) 364, 407
NlaIV GGNNCC 3 cut(s) 34, 135, 1255
NmuCI GTSAC 4 cut(s) 177, 196, 1144, 1291
NsbI TGCGCA 1 cut(s) 1113
NspV TTCGAA 2 cut(s) 221, 389
PciSI GCTCTTC 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 551
PctI GAATGC 1 cut(s) 385
PdiI GCCGGC 4 cut(s) 76, 663, 1125, 1314
PfeI GAWTC 1 cut(s) 1271
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 7 cut(s) 205, 228, 288, 334, 835, 1116, 1318
Ple19I CGATCG 2 cut(s) 30, 84
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 2 cut(s) 133, 1254
PsiI TTATAA 1 cut(s) 867
Psp5II RGGWCCY 2 cut(s) 133, 1254
Psp6I CCWGG 2 cut(s) 60, 1256
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 60, 1256
PspN4I GGNNCC 3 cut(s) 34, 135, 1255
PspPI GGNCC 3 cut(s) 133, 1229, 1254
PspPPI RGGWCCY 2 cut(s) 133, 1254
PstNI CAGNNNCTG 1 cut(s) 1106
PvuI CGATCG 2 cut(s) 30, 84
RsaI GTAC 5 cut(s) 152, 194, 794, 908, 991
RsaNI GTAC 5 cut(s) 151, 193, 793, 907, 990
SapI GCTCTTC 1 cut(s) 1065
SaqAI TTAA 1 cut(s) 828
SatI GCNGC 7 cut(s) 204, 227, 287, 333, 834, 1115, 1317
Sau3AI GATC 8 cut(s) 27, 43, 81, 162, 291, 400, 622, 1050
Sau96I GGNCC 3 cut(s) 133, 1229, 1254
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 5 cut(s) 62, 137, 158, 911, 1258
SduI GDGCHC 4 cut(s) 14, 282, 330, 575
SfaNI GCATC 1 cut(s) 261
SfuI TTCGAA 2 cut(s) 221, 389
SinI GGWCC 3 cut(s) 133, 1229, 1254
SpeI ACTAGT 1 cut(s) 680
Sse9I AATT 4 cut(s) 391, 868, 1162, 1343
SspMI CTAG 2 cut(s) 681, 1365
StyD4I CCNGG 5 cut(s) 60, 135, 156, 909, 1256
TaaI ACNGT 2 cut(s) 803, 1186
TaiI ACGT 3 cut(s) 179, 198, 902
TaqI TCGA 7 cut(s) 221, 294, 312, 389, 476, 545, 639
TasI AATT 4 cut(s) 391, 868, 1162, 1343
TatI WGTACW 2 cut(s) 150, 989
TauI GCSGC 4 cut(s) 206, 229, 335, 836
TfiI GAWTC 1 cut(s) 1271
Tru1I TTAA 1 cut(s) 828
Tru9I TTAA 1 cut(s) 828
TscAI CASTG 1 cut(s) 954
TseFI GTSAC 4 cut(s) 177, 196, 1144, 1291
TseI GCWGC 3 cut(s) 286, 1114, 1316
Tsp45I GTSAC 4 cut(s) 177, 196, 1144, 1291
TspRI CASTG 1 cut(s) 954
VneI GTGCAC 2 cut(s) 278, 326
VpaK11BI GGWCC 3 cut(s) 133, 1229, 1254
XagI CCTNNNNNAGG 1 cut(s) 65
XapI RAATTY 2 cut(s) 391, 1162
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 1254
XspI CTAG 2 cut(s) 681, 1365
ZraI GACGTC 2 cut(s) 177, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.