Rorug01G0479100

Clathrin assembly protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003256
Physical Location & Seq
Reverse (-)
56796424 .. 56802005
5582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0479100.1

Sequence Viewer

Length: 921 bp
ATGCTTAGCCAAATCAGAGCTTGGTTTTCCCTTGCTCGGCTGAGCAAGGCTATTTTCAGGGTCACTGATAGGGTGGATGAGCACCTCAGCCTCGGGGATTACGATTCGGTGAGGAAGGTTCTTAGGGTGCTTCCCAATTTAGTGCTGGTGAGGGAGCATTCTGGTGCTGTGGTCGAATCGAGAGGGCATTTTGTTCGGTCACTGGGTCCTGGATTTCATTTTCTCTCTTTGTTCAGGAGGGAGAAAATATGGAACTCTCTGAGCACCCAGCCCCAGATGGTTAACACACCGGAGACGGTTTTCGAGTCCAAAGATGGAAACTGGTTTTCTTCTGAATGTGTAGTGACTTTTCGGGTCATTGATGTGGCAAAGGCATCCTACTGCCGAGAGATTAAACCATGGGTTGGCTTAAGTGTTGGAACTTTTCCTAACACGATGTACCACTTGAAGAATGCTGCTTATTCTTTGGCCTACGCAACAAGTTACTTCCACATGAAGACATGCATGTCTTCATGTGTGGATGAGAGCAACTTGCTTCTGAAAAGCACTGAAGGCCAAGATCAAATAAGGACAATTCTCAATGAGTTTCTCATTGATTGTGGACTAAAGTGTGAGTTGGTACTGATGGTGATGCTGCCATCCATGCCAAGGAAAGATTGGTGTGAAAGCTTGGCGTTCGCTAATGCTTATGAAACAGATGCACTATTATCTGCTTTTGGCAGAGATACAACACTCGTCAAAGCGCTTTTTGAAGCAATGGAAAGGTACACATCAGGAGAACAAAAGATTATGCTTCTTGAGGAACTTTTGAAGGTAGCAGCTGAGCTACTCCAGCCAGATCTACTCCTACTTACTCTACGTATTGTTGCGAAGCACTACCACTTGCAGCAACGCGTGGAAATGAAGAACACTAAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANTH

Protein Analysis

306

Amino Acids

35.02

Weight (kDa)

8.41

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 505
AccB7I CCANNNNNTGG 1 cut(s) 404
AccII CGCG 1 cut(s) 894
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 3 cut(s) 440, 621, 767
AfeI AGCGCT 1 cut(s) 744
AfiI CCNNNNNNNGG 3 cut(s) 36, 404, 648
AflII CTTAAG 1 cut(s) 409
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 3 cut(s) 448, 752, 811
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 4 cut(s) 20, 669, 821, 826
AluI AGCT 4 cut(s) 20, 669, 821, 826
Alw21I GWGCWC 2 cut(s) 84, 266
Alw26I GTCTC 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 92
Aor51HI AGCGCT 1 cut(s) 744
AoxI GGCC 2 cut(s) 468, 553
ApeKI GCWGC 4 cut(s) 455, 634, 818, 886
AspLEI GCGC 1 cut(s) 745
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 121, 160, 640
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 501, 503
Bbv12I GWGCWC 2 cut(s) 84, 266
BbvCI CCTCAGC 1 cut(s) 86
BbvI GCAGC 4 cut(s) 442, 621, 830, 898
BccI CCATC 4 cut(s) 271, 308, 619, 646
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BciT130I CCWGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 287
BfoI RGCGCY 1 cut(s) 746
BfrI CTTAAG 1 cut(s) 409
BglII AGATCT 1 cut(s) 838
BisI GCNGC 4 cut(s) 456, 635, 819, 887
BlpI GCTNAGC 3 cut(s) 5, 41, 822
BlsI GCNGC 4 cut(s) 457, 636, 820, 888
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 383, 621, 688
BmuI ACTGGG 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 501, 503
BpmI CTGGAG 1 cut(s) 815
Bpu10I CCTNAGC 1 cut(s) 86
Bpu1102I GCTNAGC 3 cut(s) 5, 41, 822
BpuEI CTTGAG 1 cut(s) 818
BsaAI YACGTR 1 cut(s) 860
BsaJI CCNNGG 3 cut(s) 91, 398, 647
BsaWI WCCGGW 1 cut(s) 289
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 404, 648
Bse1I ACTGG 2 cut(s) 207, 326
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 91, 398, 647
BseGI GGATG 4 cut(s) 82, 374, 526, 638
BseLI CCNNNNNNNGG 3 cut(s) 36, 404, 648
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 4 cut(s) 32, 100, 251, 813
BseNI ACTGG 2 cut(s) 207, 326
BseXI GCAGC 4 cut(s) 442, 621, 830, 898
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 894
BshFI GGCC 2 cut(s) 470, 555
BsiHKAI GWGCWC 2 cut(s) 84, 266
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 36, 404, 648
BsmAI GTCTC 1 cut(s) 287
BsmBI CGTCTC 1 cut(s) 287
BsmI GAATGC 2 cut(s) 157, 457
BsnI GGCC 2 cut(s) 470, 555
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 84, 266
Bsp143I GATC 2 cut(s) 559, 838
Bsp1720I GCTNAGC 3 cut(s) 5, 41, 822
Bsp19I CCATGG 1 cut(s) 398
BspANI GGCC 2 cut(s) 470, 555
BspCNI CTCAG 4 cut(s) 33, 99, 252, 814
BspFNI CGCG 1 cut(s) 894
BspLI GGNNCC 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 409
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 2 cut(s) 207, 326
BssECI CCNNGG 3 cut(s) 91, 398, 647
BssMI GATC 2 cut(s) 559, 838
BssT1I CCWWGG 2 cut(s) 398, 647
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 298
BstAFI CTTAAG 1 cut(s) 409
BstBAI YACGTR 1 cut(s) 860
BstDEI CTNAG 6 cut(s) 5, 41, 86, 122, 260, 822
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 4 cut(s) 82, 374, 526, 638
BstFNI CGCG 1 cut(s) 894
BstH2I RGCGCY 1 cut(s) 746
BstHHI GCGC 1 cut(s) 745
BstKTI GATC 2 cut(s) 562, 841
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 559, 838
BstMWI GCNNNNNNNGC 3 cut(s) 552, 643, 832
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 2 cut(s) 504, 508
BstSCI CCNGG 1 cut(s) 208
BstSNI TACGTA 1 cut(s) 860
BstUI CGCG 1 cut(s) 894
BstV1I GCAGC 4 cut(s) 442, 621, 830, 898
BstV2I GAAGAC 2 cut(s) 501, 503
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 2 cut(s) 470, 555
BtgI CCRYGG 1 cut(s) 398
BtsCI GGATG 4 cut(s) 82, 374, 526, 638
BtsIMutI CAGTG 3 cut(s) 63, 200, 546
CfoI GCGC 1 cut(s) 745
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 439, 620, 766
CviAII CATG 6 cut(s) 399, 493, 501, 505, 513, 643
CviQI GTAC 3 cut(s) 439, 620, 766
DdeI CTNAG 6 cut(s) 5, 41, 86, 122, 260, 822
DpnI GATC 2 cut(s) 561, 840
DpnII GATC 2 cut(s) 559, 838
DrdI GACNNNNNNGTC 1 cut(s) 505
DseDI GACNNNNNNGTC 1 cut(s) 505
Eco105I TACGTA 1 cut(s) 860
Eco130I CCWWGG 2 cut(s) 398, 647
Eco47I GGWCC 1 cut(s) 206
Eco47III AGCGCT 1 cut(s) 744
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 208
EcoT14I CCWWGG 2 cut(s) 398, 647
EcoT22I ATGCAT 1 cut(s) 506
ErhI CCWWGG 2 cut(s) 398, 647
Esp3I CGTCTC 1 cut(s) 287
FaeI CATG 6 cut(s) 402, 496, 504, 508, 516, 646
FaiI YATR 9 cut(s) 250, 400, 494, 502, 506, 514, 644, 690, 791
FatI CATG 6 cut(s) 398, 492, 500, 504, 512, 642
Fnu4HI GCNGC 4 cut(s) 456, 635, 819, 887
FokI GGATG 4 cut(s) 89, 361, 533, 625
Fsp4HI GCNGC 4 cut(s) 456, 635, 819, 887
GlaI GCGC 1 cut(s) 744
GluI GCNGC 4 cut(s) 456, 635, 819, 887
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 746
HaeIII GGCC 2 cut(s) 470, 555
HapII CCGG 1 cut(s) 290
HhaI GCGC 1 cut(s) 745
Hin1II CATG 6 cut(s) 402, 496, 504, 508, 516, 646
Hin6I GCGC 1 cut(s) 743
HinP1I GCGC 1 cut(s) 743
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 3 cut(s) 104, 176, 305
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 290
HphI GGTGA 3 cut(s) 121, 160, 640
Hpy166II GTNNAC 3 cut(s) 283, 602, 768
Hpy188I TCNGA 4 cut(s) 17, 261, 334, 540
Hpy188III TCNNGA 4 cut(s) 180, 235, 774, 797
Hpy8I GTNNAC 3 cut(s) 283, 602, 768
HpyAV CCTTC 3 cut(s) 109, 545, 805
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 3 cut(s) 504, 701, 886
HpyF10VI GCNNNNNNNGC 3 cut(s) 552, 643, 832
HpyF3I CTNAG 6 cut(s) 5, 41, 86, 122, 260, 822
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 6 cut(s) 402, 496, 504, 508, 516, 646
HspAI GCGC 1 cut(s) 743
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 2 cut(s) 559, 838
LmnI GCTCC 1 cut(s) 154
Lsp1109I GCAGC 4 cut(s) 442, 621, 830, 898
LweI GCATC 3 cut(s) 383, 621, 688
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 4 cut(s) 61, 198, 343, 482
MalI GATC 2 cut(s) 561, 840
MboI GATC 2 cut(s) 559, 838
MboII GAAGA 5 cut(s) 321, 460, 501, 508, 916
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 2 cut(s) 84, 266
MluCI AATT 2 cut(s) 136, 573
MluI ACGCGT 1 cut(s) 892
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 7 cut(s) 95, 101, 105, 144, 176, 231, 793
Mph1103I ATGCAT 1 cut(s) 506
MseI TTAA 3 cut(s) 282, 393, 410
MslI CAYNNNNRTG 2 cut(s) 162, 362
MspA1I CMGCKG 1 cut(s) 821
MspCI CTTAAG 1 cut(s) 409
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 2 cut(s) 157, 457
MvaI CCWGG 1 cut(s) 210
MvnI CGCG 1 cut(s) 894
MwoI GCNNNNNNNGC 3 cut(s) 552, 643, 832
NcoI CCATGG 1 cut(s) 398
NdeII GATC 2 cut(s) 559, 838
NlaIII CATG 6 cut(s) 402, 496, 504, 508, 516, 646
NlaIV GGNNCC 1 cut(s) 207
NmeAIII GCCGAG 2 cut(s) 16, 410
NmuCI GTSAC 3 cut(s) 61, 198, 343
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 2 cut(s) 504, 508
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 2 cut(s) 157, 457
PfeI GAWTC 2 cut(s) 104, 176
PflMI CCANNNNNTGG 1 cut(s) 404
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 4 cut(s) 457, 636, 820, 888
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 860
PpuMI RGGWCCY 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 267
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 206
PspPPI RGGWCCY 1 cut(s) 206
PsuI RGATCY 1 cut(s) 838
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 440, 621, 767
RsaNI GTAC 3 cut(s) 439, 620, 766
RseI CAYNNNNRTG 2 cut(s) 162, 362
SaqAI TTAA 3 cut(s) 282, 393, 410
SatI GCNGC 4 cut(s) 456, 635, 819, 887
Sau3AI GATC 2 cut(s) 559, 838
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 2 cut(s) 84, 266
SetI ASST 9 cut(s) 22, 87, 120, 671, 767, 816, 823, 828, 862
SfaNI GCATC 3 cut(s) 383, 621, 688
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 162, 362
SmlI CTYRAG 2 cut(s) 409, 797
SmoI CTYRAG 2 cut(s) 409, 797
SnaBI TACGTA 1 cut(s) 860
Sse9I AATT 2 cut(s) 136, 573
StyD4I CCNGG 1 cut(s) 208
StyI CCWWGG 2 cut(s) 398, 647
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 862
TaqI TCGA 3 cut(s) 174, 179, 303
TaqII GACCGA 1 cut(s) 186
TasI AATT 2 cut(s) 136, 573
TfiI GAWTC 2 cut(s) 104, 176
Tru1I TTAA 3 cut(s) 282, 393, 410
Tru9I TTAA 3 cut(s) 282, 393, 410
TscAI CASTG 3 cut(s) 70, 207, 553
TseFI GTSAC 3 cut(s) 61, 198, 343
TseI GCWGC 4 cut(s) 455, 634, 818, 886
Tsp45I GTSAC 3 cut(s) 61, 198, 343
TspDTI ATGAA 5 cut(s) 206, 501, 509, 705, 917
TspRI CASTG 3 cut(s) 70, 207, 553
Van91I CCANNNNNTGG 1 cut(s) 404
Vha464I CTTAAG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 2 cut(s) 504, 508
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 654
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.