Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

12051827 .. 12053588

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13831.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGCTGGTGGTGCACTACTCCGGTGACATTGAGTTCAGAGCGGAGGTGGTAGGATTTGCAGTATTTGGGCGAGAGTTCGAGAGGGTGAGGACAAGAAGAGAAATAGTGTGCGTGGACACCAACCACCCTATCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCCGCCGCGCAATCAAACTCTAGGTTCAGTGAGCGGCGAGGAATCGTGCATTTGTTCCGAAGAAGAAGAGGAAGCTCCTTGTCGCTGCCAAGCCACGGCGCCGAGTCCTCTCTCCTCTTCATCGTCGCCGTCCCGAACTACCTGTCGTTCAACGACTTTATCTACTTCTGCGAGTCCCGCCTCGACCATGTCGCCGAACTCGAACGAAACGATGTGATGGAAGATCGGTACAGTGTTCAGGATACAAAGCACTATGAGGCCAACACGCTGTTAGGCACTATGAGGATACAAAGCGCTGGGTCAGTAACTGATTACTGGGAGTCAGTAACTAAATTATTGGGGTCAGTAACTGATTATTGGGGGTCAGTAACCAAGTTATTGGTTATTGAGTTACTGGGGGTCAGTAACCGAGTTATCGGTGACCAGAATCCGGCGACCGGAGAAAAATTGAGTTACTGGGGGTCAGTAACCGAGTTACCGATGACCGAAATCCGGCGACCGAGGAAATCCGGCAATCAAAATCCGGTGACCAGAGTCCGGCGGCCGTTGTCCAGAGTCCGACGGCTGGTGACCGGAGTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

251

Amino Acids

28.36

Weight (kDa)

8.58

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRAP2	PF07576	90 - 135	1.6e-07	BRCA1-associated protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	266
AccBSI	CCGCTC	2 cut(s)	44, 202
AccII	CGCG	1 cut(s)	176
AciI	CCGC	7 cut(s)	44, 168, 171, 174, 202, 346, 709
AcoI	YGGCCR	1 cut(s)	710
AcyI	GRCGYC	2 cut(s)	147, 267
AfaI	GTAC	1 cut(s)	398
AfeI	AGCGCT	1 cut(s)	463
AfiI	CCNNNNNNNGG	6 cut(s)	263, 598, 605, 660, 705, 733
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw21I	GWGCWC	1 cut(s)	18
Alw44I	GTGCAC	1 cut(s)	14
AlwNI	CAGNNNCTG	2 cut(s)	476, 518
Aor51HI	AGCGCT	1 cut(s)	463
AoxI	GGCC	2 cut(s)	426, 710
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	4 cut(s)	7, 178, 269, 464
AsuHPI	GGTGA	6 cut(s)	38, 100, 148, 599, 706, 748
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	170, 379
BceAI	ACGGC	4 cut(s)	280, 281, 697, 746
BciVI	GTATCC	2 cut(s)	403, 447
BfaI	CTAG	1 cut(s)	189
BfoI	RGCGCY	3 cut(s)	8, 270, 465
BfuI	GTATCC	2 cut(s)	403, 447
BisI	GCNGC	5 cut(s)	171, 174, 203, 254, 710
BlsI	GCNGC	5 cut(s)	172, 175, 204, 255, 711
BmiI	GGNNCC	1 cut(s)	268
BmrI	ACTGGG	3 cut(s)	493, 572, 634
BmuI	ACTGGG	3 cut(s)	493, 572, 634
BoxI	GACNNNNGTC	1 cut(s)	701
BpiI	GAAGAC	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	147, 267
BsaJI	CCNNGG	2 cut(s)	262, 668
BsaWI	WCCGGW	4 cut(s)	23, 605, 691, 740
Bsc4I	CCNNNNNNNGG	6 cut(s)	263, 598, 605, 660, 705, 733
Bse1I	ACTGG	3 cut(s)	488, 567, 629
BseDI	CCNNGG	2 cut(s)	262, 668
BseLI	CCNNNNNNNGG	6 cut(s)	263, 598, 605, 660, 705, 733
BseNI	ACTGG	3 cut(s)	488, 567, 629
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	18
BseX3I	CGGCCG	1 cut(s)	710
BseXI	GCAGC	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	3 cut(s)	606, 668, 713
BshFI	GGCC	2 cut(s)	428, 712
BshNI	GGYRCC	1 cut(s)	266
BsiEI	CGRYCG	3 cut(s)	606, 668, 713
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	8 cut(s)	24, 599, 606, 661, 678, 692, 706, 741
BslFI	GGGAC	2 cut(s)	284, 328
BslI	CCNNNNNNNGG	6 cut(s)	263, 598, 605, 660, 705, 733
BsmFI	GGGAC	2 cut(s)	284, 328
BsnI	GGCC	2 cut(s)	428, 712
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	391
BspACI	CCGC	7 cut(s)	44, 168, 171, 174, 202, 346, 709
BspANI	GGCC	2 cut(s)	428, 712
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	2 cut(s)	44, 202
BsrI	ACTGG	3 cut(s)	488, 567, 629
BssECI	CCNNGG	2 cut(s)	262, 668
BssMI	GATC	1 cut(s)	391
BssNI	GRCGYC	2 cut(s)	147, 267
Bst4CI	ACNGT	1 cut(s)	401
Bst6I	CTCTTC	3 cut(s)	94, 229, 290
BstACI	GRCGYC	2 cut(s)	147, 267
BstDSI	CCRYGG	1 cut(s)	262
BstEII	GGTNACC	3 cut(s)	587, 694, 736
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	3 cut(s)	8, 270, 465
BstHHI	GCGC	4 cut(s)	7, 178, 269, 464
BstKTI	GATC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	391
BstMCI	CGRYCG	3 cut(s)	606, 668, 713
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 345
BstPAI	GACNNNNGTC	1 cut(s)	701
BstPI	GGTNACC	3 cut(s)	587, 694, 736
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstZI	CGGCCG	1 cut(s)	710
BsuI	GTATCC	2 cut(s)	403, 447
BsuRI	GGCC	2 cut(s)	428, 712
BtgI	CCRYGG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	202, 406
CaiI	CAGNNNCTG	2 cut(s)	476, 518
CfoI	GCGC	4 cut(s)	7, 178, 269, 464
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	6 cut(s)	138, 243, 261, 428, 712, 733
CviKI_1	RGCY	6 cut(s)	138, 243, 261, 428, 712, 733
CviQI	GTAC	1 cut(s)	397
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	710
EagI	CGGCCG	1 cut(s)	710
Eam1104I	CTCTTC	3 cut(s)	94, 229, 290
EarI	CTCTTC	3 cut(s)	94, 229, 290
EciI	GGCGGA	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	710
Eco47III	AGCGCT	1 cut(s)	463
Eco52I	CGGCCG	1 cut(s)	710
Eco91I	GGTNACC	3 cut(s)	587, 694, 736
EcoO65I	GGTNACC	3 cut(s)	587, 694, 736
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaeI	CATG	1 cut(s)	359
FaiI	YATR	3 cut(s)	357, 423, 449
FaqI	GGGAC	2 cut(s)	284, 328
FatI	CATG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	353
Fnu4HI	GCNGC	5 cut(s)	171, 174, 203, 254, 710
Fsp4HI	GCNGC	5 cut(s)	171, 174, 203, 254, 710
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	4 cut(s)	6, 177, 268, 463
GluI	GCNGC	5 cut(s)	171, 174, 203, 254, 710
GsaI	CCCAGC	1 cut(s)	468
HaeII	RGCGCY	3 cut(s)	8, 270, 465
HaeIII	GGCC	2 cut(s)	428, 712
HapII	CCGG	8 cut(s)	24, 599, 606, 661, 678, 692, 706, 741
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	4 cut(s)	7, 178, 269, 464
Hin1I	GRCGYC	2 cut(s)	147, 267
Hin1II	CATG	1 cut(s)	359
Hin6I	GCGC	4 cut(s)	5, 176, 267, 462
HinP1I	GCGC	4 cut(s)	5, 176, 267, 462
HinfI	GANTC	7 cut(s)	210, 272, 341, 488, 595, 702, 723
HpaII	CCGG	8 cut(s)	24, 599, 606, 661, 678, 692, 706, 741
HphI	GGTGA	6 cut(s)	38, 100, 148, 599, 706, 748
Hpy166II	GTNNAC	3 cut(s)	16, 118, 156
Hpy188I	TCNGA	3 cut(s)	41, 227, 728
Hpy188III	TCNNGA	4 cut(s)	82, 301, 407, 720
Hpy8I	GTNNAC	3 cut(s)	16, 118, 156
Hpy99I	CGWCG	2 cut(s)	296, 732
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4V	TGCA	3 cut(s)	16, 62, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 345
Hsp92I	GRCGYC	2 cut(s)	147, 267
Hsp92II	CATG	1 cut(s)	359
HspAI	GCGC	4 cut(s)	5, 176, 267, 462
KasI	GGCGCC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	1 cut(s)	240
MaeI	CTAG	1 cut(s)	189
MalI	GATC	1 cut(s)	393
MbiI	CCGCTC	2 cut(s)	44, 202
MboI	GATC	1 cut(s)	391
MboII	GAAGA	7 cut(s)	111, 155, 240, 243, 246, 277, 401
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	2 cut(s)	500, 614
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	5 cut(s)	281, 350, 497, 711, 732
MmeI	TCCRAC	1 cut(s)	751
MspI	CCGG	8 cut(s)	24, 599, 606, 661, 678, 692, 706, 741
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	13, 345
NarI	GGCGCC	1 cut(s)	267
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	2 cut(s)	175, 295
NmuCI	GTSAC	4 cut(s)	26, 587, 694, 736
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 366, 375
PfeI	GAWTC	2 cut(s)	210, 595
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	172, 175, 204, 255, 711
PleI	GAGTC	5 cut(s)	280, 349, 496, 710, 731
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	5 cut(s)	280, 349, 496, 710, 731
PshAI	GACNNNNGTC	1 cut(s)	701
PspEI	GGTNACC	3 cut(s)	587, 694, 736
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	268
PstNI	CAGNNNCTG	2 cut(s)	476, 518
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SatI	GCNGC	5 cut(s)	171, 174, 203, 254, 710
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	5 cut(s)	281, 350, 497, 711, 732
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	4 cut(s)	51, 194, 245, 312
SfoI	GGCGCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	500, 614
SsiI	CCGC	7 cut(s)	44, 168, 171, 174, 202, 346, 709
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	401
TaqI	TCGA	4 cut(s)	81, 141, 351, 369
TaqII	GACCGA	2 cut(s)	668, 682
TasI	AATT	2 cut(s)	500, 614
TauI	GCSGC	4 cut(s)	173, 176, 205, 712
TfiI	GAWTC	2 cut(s)	210, 595
TscAI	CASTG	2 cut(s)	202, 406
TseFI	GTSAC	4 cut(s)	26, 587, 694, 736
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	4 cut(s)	26, 587, 694, 736
TspDTI	ATGAA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	202, 406
Tth111I	GACNNNGTC	1 cut(s)	356
VneI	GTGCAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.