FvH4_1g02780

Brca1-associated

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
1588373 .. 1592421
4049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02780.t2

Sequence Viewer

Length: 1473 bp
ATGTTCTTCCTCCGAATCCACTCAGTGGACACCAACCACCCCGTCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCCGCCAAGTCCCCCGCCGCCGCCGCGCAATCAAGCCCTAGGTTCAGCGAGCGGCGAGGAATCGCGCATCTGTTCCGAAGAAGAAGAGGAACCTCGTCGTCGTTGCCGAGCCACGGCGCCGCTGAGTCCTCTCTCCTCTTCGTCGTCGCCGTCCCGAACTATCTCTCCTTCAACGACTTCATCCGCTTCTGCGAGTCGCGCCTCGACCATGTCGCCGAGCTCGTCTTCATCAGGAACGATGCGATTGAAGATCGGTACAGTGTTGTGATAAGGCTTATGAATGAGTTGAAGGCAGATGAATTTTATGGCAGTTTTAATGGGAAGAAGTATTCGCCTGGCGAGGCTGAGGTGTGCCATATATTGTTTCTGACTTCAGTGGACTACACAGATTCAGCGCAAATAGCTGGGACGCCTCCAGAGGAAAAATGCACCGAATTGCCTAGTTGCCCTGTTTGCCTTGAGCGACTGGACGCAGACAGTAGTGGAATAGCAACTACACTATGCGACCATTCATTTCCATGTCCTTGTATCTCGAAATGGACTTACTTATCATGCCAGGTTTGCCGATTGTGTCAACAGCAGGATAACAATCCAGCTTGCTCTGTCTGTGGAATAATGGAGAATCCTTGGGTTTGTGTAATATGTGGTTTTGTAGGGTGTGGAAGATATAATGAAGGCAAACACGCTGTTAGGCACTATGAGGATACAAAGCACTGCTATTCTCTTGACTTGAATAGCCAGCAGATCTGGGATTATGTTGGTGATGCTTATGTTCACCGCCTGAACCAATCAAAAATTGATGGCAAGCTAGGAACTGATGTCAATTCTCACTGTAGAGCGTTGGGAGGAGATTGTGAAAGTTGTGAATGTAGTGAGGATTCTGGAATTAGTGGAGCCCTCTATAGTAGCAAAGTTGAAACTATTGTGGATGAGTATAATCGACTTCTTGCAAGCCAGCTTGAGACTCAAAGACAGTACTATGAAAATCTACTGATGGAGGCCAAAAGTAAAACTGAAAATTCAATGTCAGAAGCAGTGGAGAAGGCTATAAATTTAAAGATACAGGATATTCAAAGTAAATTGGAGAAGTCTCGTGAGGAAAAAAAAGCTGTTGAATATGTCCACCAAACTCTCATCGAGGAGCAACAAACCTTGAGTGCAAAATATAAGGAAACTGAAGAGAGGGAAGCTATGACAATGAGGTTAAGAGACGAGAAGATACTTGATCTGGAAGAACAGATTAGAGATCTTACTGTCTATATTGGAGCCCAGAAAACACTGAATGGCATGACAAACTCCGATGACATCAAAGGGGGAACACTCCTACCTGTACCATCTAAGCAGCCTTCTTCGGCCAAGAATAGGAAAACAAAATCTAGCAGAAGACGGAATTAA

Protein Analysis

491

Amino Acids

55.09

Weight (kDa)

5.65

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 67 - 161 1e-30 BRCA1-associated protein 2
zf-UBP PF02148 226 - 288 9.7e-21 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 130
AccII CGCG 3 cut(s) 104, 143, 277
AcoI YGGCCR 1 cut(s) 1431
AcsI RAATTY 3 cut(s) 377, 1096, 1129
AcuI CTGAAG 2 cut(s) 435, 1275
AcyI GRCGYC 3 cut(s) 57, 195, 488
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 3 cut(s) 335, 1055, 1410
AfiI CCNNNNNNNGG 3 cut(s) 25, 191, 1440
AgsI TTSAA 8 cut(s) 250, 326, 367, 811, 995, 1101, 1151, 1193
AjnI CCWGG 2 cut(s) 412, 633
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 7 cut(s) 298, 482, 674, 886, 1036, 1187, 1268
AluI AGCT 7 cut(s) 298, 482, 674, 886, 1036, 1187, 1268
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 3 cut(s) 1034, 1173, 1281
AoxI GGCC 2 cut(s) 1077, 1431
ApeKI GCWGC 1 cut(s) 1420
ApoI RAATTY 3 cut(s) 377, 1096, 1129
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 5 cut(s) 106, 145, 197, 279, 475
AsuHPI GGTGA 3 cut(s) 58, 845, 851
AvrII CCTAGG 1 cut(s) 116
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 3 cut(s) 300, 976, 1348
BauI CACGAG 1 cut(s) 1170
BbsI GAAGAC 3 cut(s) 60, 295, 1468
Bbv12I GWGCWC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 1432
BccI CCATC 4 cut(s) 80, 872, 1066, 1420
BceAI ACGGC 2 cut(s) 208, 212
BciT130I CCWGG 2 cut(s) 414, 635
BciVI GTATCC 1 cut(s) 775
BcoDI GTCTC 3 cut(s) 1034, 1173, 1281
BfaI CTAG 4 cut(s) 117, 519, 887, 1455
BfmI CTRYAG 2 cut(s) 910, 979
BfoI RGCGCY 1 cut(s) 198
BfuI GTATCC 1 cut(s) 775
BglII AGATCT 2 cut(s) 822, 1324
BisI GCNGC 7 cut(s) 81, 96, 99, 102, 131, 198, 1421
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 7 cut(s) 82, 97, 100, 103, 132, 199, 1422
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 2 cut(s) 414, 635
BmiI GGNNCC 4 cut(s) 169, 196, 973, 1345
BmrFI CCNGG 2 cut(s) 414, 635
BmsI GCATC 3 cut(s) 154, 307, 832
BpiI GAAGAC 3 cut(s) 60, 295, 1468
BpmI CTGGAG 1 cut(s) 477
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 3 cut(s) 557, 1058, 1252
BsaBI GATNNNNATC 1 cut(s) 666
BsaHI GRCGYC 3 cut(s) 57, 195, 488
BsaJI CCNNGG 3 cut(s) 116, 190, 704
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 191, 1440
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 666
BseBI CCWGG 2 cut(s) 414, 635
BseDI CCNNGG 3 cut(s) 116, 190, 704
BseGI GGATG 2 cut(s) 258, 1012
BseJI GATNNNNATC 1 cut(s) 666
BseLI CCNNNNNNNGG 3 cut(s) 25, 191, 1440
BseMII CTCAG 3 cut(s) 36, 192, 414
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 3 cut(s) 203, 939, 1232
BseXI GCAGC 1 cut(s) 1432
BseYI CCCAGC 1 cut(s) 482
Bsh1236I CGCG 3 cut(s) 104, 143, 277
BshFI GGCC 2 cut(s) 1079, 1433
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 300
BslFI GGGAC 3 cut(s) 73, 215, 499
BslI CCNNNNNNNGG 3 cut(s) 25, 191, 1440
BsmAI GTCTC 3 cut(s) 1034, 1173, 1281
BsmBI CGTCTC 1 cut(s) 1281
BsmFI GGGAC 3 cut(s) 73, 215, 499
BsnI GGCC 2 cut(s) 1079, 1433
Bsp1286I GDGCHC 3 cut(s) 300, 976, 1348
Bsp143I GATC 4 cut(s) 328, 822, 1303, 1324
BspANI GGCC 2 cut(s) 1079, 1433
BspCNI CTCAG 3 cut(s) 35, 193, 415
BspFNI CGCG 3 cut(s) 104, 143, 277
BspLI GGNNCC 4 cut(s) 169, 196, 973, 1345
BspT107I GGYRCC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 3 cut(s) 116, 190, 704
BssMI GATC 4 cut(s) 328, 822, 1303, 1324
BssNI GRCGYC 3 cut(s) 57, 195, 488
BssSI CACGAG 1 cut(s) 1170
BssT1I CCWWGG 2 cut(s) 116, 704
Bst2BI CACGAG 1 cut(s) 1170
Bst2UI CCWGG 2 cut(s) 414, 635
Bst4CI ACNGT 5 cut(s) 338, 557, 911, 1053, 1333
Bst6I CTCTTC 3 cut(s) 157, 221, 1251
BstACI GRCGYC 3 cut(s) 57, 195, 488
BstC8I GCNNGC 6 cut(s) 128, 676, 818, 884, 1030, 1034
BstDEI CTNAG 4 cut(s) 22, 201, 423, 1416
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 2 cut(s) 258, 1012
BstFNI CGCG 3 cut(s) 104, 143, 277
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 5 cut(s) 106, 145, 197, 279, 475
BstKTI GATC 4 cut(s) 331, 825, 1306, 1327
BstMAI GTCTC 3 cut(s) 1034, 1173, 1281
BstMBI GATC 4 cut(s) 328, 822, 1303, 1324
BstMWI GCNNNNNNNGC 5 cut(s) 101, 276, 479, 531, 639
BstNI CCWGG 2 cut(s) 414, 635
BstSCI CCNGG 2 cut(s) 412, 633
BstSFI CTRYAG 2 cut(s) 910, 979
BstUI CGCG 3 cut(s) 104, 143, 277
BstV1I GCAGC 1 cut(s) 1432
BstV2I GAAGAC 3 cut(s) 60, 295, 1468
BstX2I RGATCY 2 cut(s) 822, 1324
BstYI RGATCY 2 cut(s) 822, 1324
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 2 cut(s) 1079, 1433
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 2 cut(s) 258, 1012
BtsI GCAGTG 2 cut(s) 790, 1119
BtsIMutI CAGTG 7 cut(s) 30, 343, 459, 790, 907, 1119, 1355
Cac8I GCNNGC 6 cut(s) 128, 676, 818, 884, 1030, 1034
CfoI GCGC 5 cut(s) 106, 145, 197, 279, 475
CseI GACGC 3 cut(s) 65, 496, 557
Csp6I GTAC 3 cut(s) 334, 1054, 1409
CviAII CATG 4 cut(s) 287, 597, 630, 1366
CviQI GTAC 3 cut(s) 334, 1054, 1409
DdeI CTNAG 4 cut(s) 22, 201, 423, 1416
DinI GGCGCC 1 cut(s) 196
DpnI GATC 4 cut(s) 330, 824, 1305, 1326
DpnII GATC 4 cut(s) 328, 822, 1303, 1324
DraI TTTAAA 1 cut(s) 1134
DraIII CACNNNGTG 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 1431
Eam1104I CTCTTC 3 cut(s) 157, 221, 1251
EarI CTCTTC 3 cut(s) 157, 221, 1251
EciI GGCGGA 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 116, 704
Eco24I GRGCYC 3 cut(s) 300, 976, 1348
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 2 cut(s) 435, 1275
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 412, 633
EcoT14I CCWWGG 2 cut(s) 116, 704
EcoT38I GRGCYC 3 cut(s) 300, 976, 1348
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 2 cut(s) 116, 704
Esp3I CGTCTC 1 cut(s) 1281
FaeI CATG 4 cut(s) 290, 600, 633, 1369
FaqI GGGAC 3 cut(s) 73, 215, 499
FatI CATG 4 cut(s) 286, 596, 629, 1365
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 7 cut(s) 81, 96, 99, 102, 131, 198, 1421
FokI GGATG 2 cut(s) 245, 1019
FriOI GRGCYC 3 cut(s) 300, 976, 1348
Fsp4HI GCNGC 7 cut(s) 81, 96, 99, 102, 131, 198, 1421
FspBI CTAG 4 cut(s) 117, 519, 887, 1455
GlaI GCGC 5 cut(s) 105, 144, 196, 278, 474
GluI GCNGC 7 cut(s) 81, 96, 99, 102, 131, 198, 1421
GsaI CCCAGC 1 cut(s) 486
GsuI CTGGAG 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 1079, 1433
HgaI GACGC 3 cut(s) 65, 496, 557
HhaI GCGC 5 cut(s) 106, 145, 197, 279, 475
Hin1I GRCGYC 3 cut(s) 57, 195, 488
Hin1II CATG 4 cut(s) 290, 600, 633, 1369
Hin6I GCGC 5 cut(s) 104, 143, 195, 277, 473
HinP1I GCGC 5 cut(s) 104, 143, 195, 277, 473
HincII GTYRAC 1 cut(s) 653
HindII GTYRAC 1 cut(s) 653
HinfI GANTC 8 cut(s) 15, 138, 203, 272, 467, 700, 956, 1042
HphI GGTGA 3 cut(s) 58, 845, 851
Hpy166II GTNNAC 6 cut(s) 28, 66, 457, 653, 853, 1201
Hpy188I TCNGA 5 cut(s) 14, 155, 447, 1108, 1378
Hpy188III TCNNGA 8 cut(s) 232, 310, 494, 610, 803, 960, 1172, 1307
Hpy8I GTNNAC 6 cut(s) 28, 66, 457, 653, 853, 1201
Hpy99I CGWCG 4 cut(s) 178, 181, 224, 227
HpyAV CCTTC 5 cut(s) 256, 361, 746, 1114, 1434
HpyCH4III ACNGT 5 cut(s) 338, 557, 911, 1053, 1333
HpyCH4V TGCA 3 cut(s) 507, 1028, 1238
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 276, 479, 531, 639
HpyF3I CTNAG 4 cut(s) 22, 201, 423, 1416
Hsp92I GRCGYC 3 cut(s) 57, 195, 488
Hsp92II CATG 4 cut(s) 290, 600, 633, 1369
HspAI GCGC 5 cut(s) 104, 143, 195, 277, 473
KasI GGCGCC 1 cut(s) 194
Kzo9I GATC 4 cut(s) 328, 822, 1303, 1324
LmnI GCTCC 3 cut(s) 971, 1219, 1343
Lsp1109I GCAGC 1 cut(s) 1432
LweI GCATC 3 cut(s) 154, 307, 832
MaeI CTAG 4 cut(s) 117, 519, 887, 1455
MalI GATC 4 cut(s) 330, 824, 1305, 1326
MbiI CCGCTC 1 cut(s) 130
MboI GATC 4 cut(s) 328, 822, 1303, 1324
MflI RGATCY 2 cut(s) 822, 1324
MhlI GDGCHC 3 cut(s) 300, 976, 1348
MluCI AATT 9 cut(s) 377, 512, 873, 901, 963, 1096, 1129, 1157, 1468
Mly113I GGCGCC 1 cut(s) 195
MlyI GAGTC 3 cut(s) 212, 281, 1036
MseI TTAA 4 cut(s) 393, 1133, 1283, 1471
MslI CAYNNNNRTG 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 414, 635
MvaI CCWGG 2 cut(s) 414, 635
MvnI CGCG 3 cut(s) 104, 143, 277
MwoI GCNNNNNNNGC 5 cut(s) 101, 276, 479, 531, 639
NarI GGCGCC 1 cut(s) 195
NdeII GATC 4 cut(s) 328, 822, 1303, 1324
NlaIII CATG 4 cut(s) 290, 600, 633, 1369
NlaIV GGNNCC 4 cut(s) 169, 196, 973, 1345
NmeAIII GCCGAG 3 cut(s) 85, 210, 319
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 182, 225, 297
PfeI GAWTC 5 cut(s) 15, 138, 467, 700, 956
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 7 cut(s) 82, 97, 100, 103, 132, 199, 1422
PleI GAGTC 3 cut(s) 211, 280, 1036
PluTI GGCGCC 1 cut(s) 198
PpsI GAGTC 3 cut(s) 211, 280, 1036
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 412, 633
PspFI CCCAGC 1 cut(s) 482
PspGI CCWGG 2 cut(s) 412, 633
PspN4I GGNNCC 4 cut(s) 169, 196, 973, 1345
PsuI RGATCY 2 cut(s) 822, 1324
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 3 cut(s) 335, 1055, 1410
RsaNI GTAC 3 cut(s) 334, 1054, 1409
RseI CAYNNNNRTG 1 cut(s) 595
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 4 cut(s) 393, 1133, 1283, 1471
SatI GCNGC 7 cut(s) 81, 96, 99, 102, 131, 198, 1421
Sau3AI GATC 4 cut(s) 328, 822, 1303, 1324
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 3 cut(s) 212, 281, 1036
ScrFI CCNGG 2 cut(s) 414, 635
SduI GDGCHC 3 cut(s) 300, 976, 1348
SfaNI GCATC 3 cut(s) 154, 307, 832
SfcI CTRYAG 2 cut(s) 910, 979
SfoI GGCGCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 3 cut(s) 536, 1037, 1231
SmoI CTYRAG 3 cut(s) 536, 1037, 1231
Sse9I AATT 9 cut(s) 377, 512, 873, 901, 963, 1096, 1129, 1157, 1468
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 4 cut(s) 117, 519, 887, 1455
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 412, 633
StyI CCWWGG 2 cut(s) 116, 704
TaaI ACNGT 5 cut(s) 338, 557, 911, 1053, 1333
TaqI TCGA 5 cut(s) 51, 282, 611, 1018, 1215
TasI AATT 9 cut(s) 377, 512, 873, 901, 963, 1096, 1129, 1157, 1468
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 6 cut(s) 83, 98, 101, 104, 133, 200
TfiI GAWTC 5 cut(s) 15, 138, 467, 700, 956
Tru1I TTAA 4 cut(s) 393, 1133, 1283, 1471
Tru9I TTAA 4 cut(s) 393, 1133, 1283, 1471
TscAI CASTG 7 cut(s) 30, 343, 459, 797, 914, 1119, 1362
TseI GCWGC 1 cut(s) 1420
TspDTI ATGAA 7 cut(s) 247, 295, 371, 390, 579, 765, 1074
TspRI CASTG 7 cut(s) 30, 343, 459, 797, 914, 1119, 1362
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 25
XapI RAATTY 3 cut(s) 377, 1096, 1129
XmaJI CCTAGG 1 cut(s) 116
XspI CTAG 4 cut(s) 117, 519, 887, 1455
ZrmI AGTACT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.