Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014136.1

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Forward (+)

58058 .. 60958

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014136.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

atgttcttcctccgagtccactcagtggacaccaaccaccccgtcagcctcgaagacgccgagttcaccaccatctccgccgccaaggccgccgccgccgcccaatcaaaacctaggttcagcgagcggagaggaatcgcgcacctctttcgaaaacgaggaaactcgtcgctgccgagccacgacgccgagtccactctcctcttcgtcgtcgccgtccccaactacctctccttcaacgacttcatccgcttctgcgagccccgcctcgaccatgtcgccgacctcgtcttcatcagaaacgatgccatggaagatcggtacagtgttgtgattaggcttatggatgagatgaaggcagatggattttatggcagtttcaatgggaagaagtattcgccgggcgaggctgaggtgtgccatatactgtttctggcttcagtggactacacagattcagctgaaatagccgggactcctccagatttatgtactgaactgcctagttgcccagtttgccttgagagattggatgcggacacaagtggaatagcaactacactatgcgaccattcatttcaatgtccttgtatctcaaaatggacttatttgtcatgccaggtttgccgattgtgtcaacagcaggatgacaatccagcttgctctgtctgtggaatattggaaaatccttgggtttgtgtaatatgtggttttgtagggtgtggaagatataaagaaggccatgctgttaggcactcggaggatacacagcattgctattctcttgacttgaagagccagcagatctgggattatgttggtgatgcttatgttcaccgcctgaaccaatcaaaagttgatggcaagctaataacggatgtcaattctcactgtcgagagttgggaggagattgtgacagttgtgaatgtagtgaggattctggaattagtggagccctctatagtagcaaagttgaaactattgttgacgagtataatcgacttcttgcaagtcagcttgagactcaaagacagtactatgaatctctactgatggaggccaaaagtaaagctgaaagttcaaattcagaagcattggagaaggctgtaaatttgaagatacagggtattcaaagtaaactggagaaatctcttgaggaaaaaaaggctgttgcacacattcaccaaactctcatcgaggagcaacaaaccttgagtgcaaaatataaggaaattgaagagaggtacttatctcctagtctttttaagcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

424

Amino Acids

47.51

Weight (kDa)

5.26

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	1084, 1111
AcuI	CTGAAG	1 cut(s)	423
AcyI	GRCGYC	2 cut(s)	57, 186
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	4 cut(s)	323, 493, 1037, 1247
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	9 cut(s)	238, 382, 581, 793, 977, 1083, 1117, 1133, 1238
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	5 cut(s)	461, 659, 868, 1018, 1073
AluI	AGCT	5 cut(s)	461, 659, 868, 1018, 1073
Alw26I	GTCTC	1 cut(s)	1016
AoxI	GGCC	3 cut(s)	87, 739, 1059
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	1084, 1111
AspA2I	CCTAGG	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	142
AsuC2I	CCSGG	2 cut(s)	402, 472
AsuHPI	GGTGA	4 cut(s)	58, 827, 833, 1175
AsuII	TTCGAA	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	264, 958
BbsI	GAAGAC	2 cut(s)	60, 283
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	4 cut(s)	80, 356, 854, 1048
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	620
BciVI	GTATCC	1 cut(s)	757
BcnI	CCSGG	2 cut(s)	402, 472
BcoDI	GTCTC	1 cut(s)	1016
BfaI	CTAG	3 cut(s)	114, 504, 1257
BfmI	CTRYAG	1 cut(s)	961
BfuI	GTATCC	1 cut(s)	757
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
BlnI	CCTAGG	1 cut(s)	113
BlsI	GCNGC	6 cut(s)	82, 91, 94, 97, 100, 174
BmcAI	AGTACT	1 cut(s)	1037
Bme1390I	CCNGG	3 cut(s)	402, 472, 620
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmiI	GGNNCC	1 cut(s)	955
BmrFI	CCNGG	3 cut(s)	402, 472, 620
BmrI	ACTGGG	1 cut(s)	506
BmsI	GCATC	3 cut(s)	295, 523, 814
BmuI	ACTGGG	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	60, 283
BpmI	CTGGAG	2 cut(s)	465, 1163
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	151
BpuEI	CTTGAG	4 cut(s)	542, 1040, 1175, 1234
BpuMI	CCSGG	2 cut(s)	402, 472
BsaBI	GATNNNNATC	1 cut(s)	651
BsaHI	GRCGYC	2 cut(s)	57, 186
BsaJI	CCNNGG	4 cut(s)	84, 113, 309, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	2 cut(s)	512, 1146
Bse3DI	GCAATG	1 cut(s)	772
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	4 cut(s)	84, 113, 309, 689
BseGI	GGATG	5 cut(s)	246, 352, 538, 652, 883
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	2 cut(s)	36, 402
BseNI	ACTGG	2 cut(s)	512, 1146
BseRI	GAGGAG	4 cut(s)	191, 468, 921, 1214
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	3 cut(s)	89, 741, 1061
BsiSI	CCGG	2 cut(s)	401, 471
BslFI	GGGAC	2 cut(s)	203, 487
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	1016
BsmFI	GGGAC	2 cut(s)	203, 487
BsnI	GGCC	3 cut(s)	89, 741, 1061
Bsp119I	TTCGAA	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	264, 958
Bsp143I	GATC	2 cut(s)	316, 804
Bsp19I	CCATGG	1 cut(s)	309
BspANI	GGCC	3 cut(s)	89, 741, 1061
BspCNI	CTCAG	2 cut(s)	35, 403
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	955
BspQI	GCTCTTC	1 cut(s)	788
BspT104I	TTCGAA	1 cut(s)	151
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	772
BsrI	ACTGG	2 cut(s)	512, 1146
BssECI	CCNNGG	4 cut(s)	84, 113, 309, 689
BssMI	GATC	2 cut(s)	316, 804
BssNI	GRCGYC	2 cut(s)	57, 186
BssT1I	CCWWGG	4 cut(s)	84, 113, 309, 689
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	5 cut(s)	326, 429, 893, 920, 1035
Bst6I	CTCTTC	3 cut(s)	209, 788, 1233
BstACI	GRCGYC	2 cut(s)	57, 186
BstBI	TTCGAA	1 cut(s)	151
BstC8I	GCNNGC	5 cut(s)	125, 260, 661, 800, 866
BstDEI	CTNAG	2 cut(s)	22, 411
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	5 cut(s)	246, 352, 538, 652, 883
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	319, 807
BstMAI	GTCTC	1 cut(s)	1016
BstMBI	GATC	2 cut(s)	316, 804
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 89, 95, 98, 264, 467, 516, 624
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	3 cut(s)	400, 470, 618
BstSFI	CTRYAG	1 cut(s)	961
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	159
BstV2I	GAAGAC	2 cut(s)	60, 283
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	3 cut(s)	89, 741, 1061
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	5 cut(s)	246, 352, 538, 652, 883
BtsIMutI	CAGTG	4 cut(s)	30, 331, 447, 889
Cac8I	GCNNGC	5 cut(s)	125, 260, 661, 800, 866
CfoI	GCGC	1 cut(s)	142
CseI	GACGC	2 cut(s)	65, 194
Csp6I	GTAC	4 cut(s)	322, 492, 1036, 1246
CviAII	CATG	4 cut(s)	275, 310, 615, 743
CviQI	GTAC	4 cut(s)	322, 492, 1036, 1246
DdeI	CTNAG	2 cut(s)	22, 411
DpnI	GATC	2 cut(s)	318, 806
DpnII	GATC	2 cut(s)	316, 804
DraIII	CACNNNGTG	1 cut(s)	25
DrdI	GACNNNNNNGTC	1 cut(s)	610
DriI	GACNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	3 cut(s)	209, 788, 1233
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	3 cut(s)	209, 788, 1233
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	4 cut(s)	84, 113, 309, 689
Eco24I	GRGCYC	2 cut(s)	264, 958
Eco57I	CTGAAG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	618
EcoT14I	CCWWGG	4 cut(s)	84, 113, 309, 689
EcoT38I	GRGCYC	2 cut(s)	264, 958
ErhI	CCWWGG	4 cut(s)	84, 113, 309, 689
FaeI	CATG	4 cut(s)	278, 313, 618, 746
FaqI	GGGAC	2 cut(s)	203, 487
FatI	CATG	4 cut(s)	274, 309, 614, 742
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
FokI	GGATG	5 cut(s)	233, 359, 545, 659, 890
FriOI	GRGCYC	2 cut(s)	264, 958
Fsp4HI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
FspBI	CTAG	3 cut(s)	114, 504, 1257
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
GsuI	CTGGAG	2 cut(s)	465, 1163
HaeIII	GGCC	3 cut(s)	89, 741, 1061
HapII	CCGG	2 cut(s)	401, 471
HgaI	GACGC	2 cut(s)	65, 194
HhaI	GCGC	1 cut(s)	142
Hin1I	GRCGYC	2 cut(s)	57, 186
Hin1II	CATG	4 cut(s)	278, 313, 618, 746
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HincII	GTYRAC	2 cut(s)	638, 988
HindII	GTYRAC	2 cut(s)	638, 988
HinfI	GANTC	8 cut(s)	15, 135, 191, 455, 475, 938, 1024, 1043
HpaII	CCGG	2 cut(s)	401, 471
HphI	GGTGA	4 cut(s)	58, 827, 833, 1175
Hpy166II	GTNNAC	9 cut(s)	19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy188I	TCNGA	4 cut(s)	14, 299, 760, 1090
Hpy188III	TCNNGA	5 cut(s)	482, 785, 896, 942, 1154
Hpy8I	GTNNAC	9 cut(s)	19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy99I	CGWCG	4 cut(s)	172, 188, 212, 215
HpyAV	CCTTC	4 cut(s)	244, 349, 731, 1096
HpyCH4III	ACNGT	5 cut(s)	326, 429, 893, 920, 1035
HpyCH4V	TGCA	3 cut(s)	1010, 1175, 1220
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 89, 95, 98, 264, 467, 516, 624
HpyF3I	CTNAG	2 cut(s)	22, 411
Hsp92I	GRCGYC	2 cut(s)	57, 186
Hsp92II	CATG	4 cut(s)	278, 313, 618, 746
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	316, 804
LguI	GCTCTTC	1 cut(s)	788
LmnI	GCTCC	2 cut(s)	953, 1201
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	3 cut(s)	295, 523, 814
MaeI	CTAG	3 cut(s)	114, 504, 1257
MaeIII	GTNAC	1 cut(s)	914
MalI	GATC	2 cut(s)	318, 806
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	2 cut(s)	316, 804
MboII	GAAGA	9 cut(s)	65, 196, 283, 326, 400, 738, 805, 1129, 1250
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	2 cut(s)	264, 958
MluCI	AATT	5 cut(s)	883, 945, 1084, 1111, 1233
MlyI	GAGTC	4 cut(s)	24, 200, 469, 1018
MseI	TTAA	1 cut(s)	1266
MslI	CAYNNNNRTG	1 cut(s)	580
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	401, 471
MspR9I	CCNGG	3 cut(s)	402, 472, 620
MvaI	CCWGG	1 cut(s)	620
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	8 cut(s)	86, 89, 95, 98, 264, 467, 516, 624
NciI	CCSGG	2 cut(s)	402, 472
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	316, 804
NlaIII	CATG	4 cut(s)	278, 313, 618, 746
NlaIV	GGNNCC	1 cut(s)	955
NmeAIII	GCCGAG	3 cut(s)	85, 201, 214
NmuCI	GTSAC	1 cut(s)	914
NspV	TTCGAA	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 173, 213, 285
PfeI	GAWTC	4 cut(s)	135, 455, 938, 1043
PflFI	GACNNNGTC	2 cut(s)	275, 287
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	6 cut(s)	82, 91, 94, 97, 100, 174
PleI	GAGTC	4 cut(s)	23, 199, 469, 1018
PpsI	GAGTC	4 cut(s)	23, 199, 469, 1018
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	955
PsuI	RGATCY	1 cut(s)	804
PsyI	GACNNNGTC	2 cut(s)	275, 287
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	323, 493, 1037, 1247
RsaNI	GTAC	4 cut(s)	322, 492, 1036, 1246
RseI	CAYNNNNRTG	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	1266
SatI	GCNGC	6 cut(s)	81, 90, 93, 96, 99, 173
Sau3AI	GATC	2 cut(s)	316, 804
ScaI	AGTACT	1 cut(s)	1037
SchI	GAGTC	4 cut(s)	24, 200, 469, 1018
ScrFI	CCNGG	3 cut(s)	402, 472, 620
SduI	GDGCHC	2 cut(s)	264, 958
SfaNI	GCATC	3 cut(s)	295, 523, 814
SfcI	CTRYAG	1 cut(s)	961
SfuI	TTCGAA	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	580
SmlI	CTYRAG	4 cut(s)	521, 1019, 1154, 1213
SmoI	CTYRAG	4 cut(s)	521, 1019, 1154, 1213
Sse9I	AATT	5 cut(s)	883, 945, 1084, 1111, 1233
SspI	AATATT	1 cut(s)	678
SspMI	CTAG	3 cut(s)	114, 504, 1257
StyD4I	CCNGG	3 cut(s)	400, 470, 618
StyI	CCWWGG	4 cut(s)	84, 113, 309, 689
TaaI	ACNGT	5 cut(s)	326, 429, 893, 920, 1035
TaqI	TCGA	6 cut(s)	51, 151, 270, 895, 1000, 1197
TasI	AATT	5 cut(s)	883, 945, 1084, 1111, 1233
TatI	WGTACW	2 cut(s)	491, 1035
TauI	GCSGC	5 cut(s)	83, 92, 95, 98, 101
TfiI	GAWTC	4 cut(s)	135, 455, 938, 1043
Tru1I	TTAA	1 cut(s)	1266
Tru9I	TTAA	1 cut(s)	1266
TscAI	CASTG	4 cut(s)	30, 331, 447, 896
TseFI	GTSAC	1 cut(s)	914
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	914
TspDTI	ATGAA	5 cut(s)	235, 283, 368, 564, 1056
TspGWI	ACGGA	1 cut(s)	890
TspRI	CASTG	4 cut(s)	30, 331, 447, 896
Tth111I	GACNNNGTC	2 cut(s)	275, 287
Van91I	CCANNNNNTGG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	1084, 1111
XmaJI	CCTAGG	1 cut(s)	113
XspI	CTAG	3 cut(s)	114, 504, 1257
ZrmI	AGTACT	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.