Rh2DG033300

Brca1-associated

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
2163297 .. 2167380
4084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG033300.1

Sequence Viewer

Length: 1221 bp
ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCCGTCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCCGCCAAGGCCGCCGCCGCCGCCCAATCAAAACCTAGGTTCAGCGAGCGGAGAGGAATCGCGCACCTCTTTCGAAAACGAGGAAACTCGTCGCTGCCGAGCCACGACGCCGAGTCCACTCTCCTCTTCGTCGTCGCCGTCCCCAACTACCTCTCCTTCAACGACTTCATCCGCTTCTGCGAGCCCCGCCTCGACCATGTGGCCGACCTCGTCTTCATCAGAAACGATGCCATGGAAGATCGGTACAGTGTTGTGATTAGGCTTATGGATGAGATGAAGGCAGATGGATTTTATGGCAGTTTCAATGGGAAGAAGTATTCGCCGGGCGAGGCTGAGGTGTGCCATATACTGTTTCTGGCTTCAGTGGACTACACAGATTCAGCTGAAATAGCCGGGACTCCTCCAGATTTATGTACCGAACTGCCTAGTTGCCCAGTTTGCCTTGAGAGATTGGATGCGGACACAAGTGGAATAGCAACTACACTATGCGACCATTCATTTCAATGTCCTTGTATCTCAAAATGGACTTATTTGTCATGCCAGGTTTGCCGATTGTGTCAACAGCAGGATGACAATCCAGCTTGCTCTGTCTGTGGAATATTGGAAAATCCTTGGGTTTGTGTAATATGTGGTTTTGTAGGGTGTGGAAGATATAAAGAAGGCCATGCTGTTAGGCACTCGGAGGATACACAGCATTGCTATTCTCTTGACTTGAAGAGCCAGCAGATCTGGGATTATGTTGGTGACGCTTATGTTCACCGCCTGAACCAATCAAAAGTTGATGGCAAGCTAATAACGGATGTCAATTCTCACTGTCGAGAGTTGGGAGGAGATTGTGACAGTTGTGAATGTAGTGAGGATTCTGGAATTAGTGGAGCCCTCTATAGTAGCAAAGTTGAAACTATTGTTGACGAGTATAATCGACTTCTTGCAAGTCAGCTTGAGACTCAAAGACAGTACTATGAATCTCTACTGATGGAGGCCAAAAGTAAAGCTGAAAGTTCAAATTCAGAAGCATTGGAGAAGGCTGTAAATTTGAAGATACAGGATATTCAAAGTAAACTGGAGAAATCTCTTGAGGAAAAAAAGGCTGTTGCACACGTGAGTGCTATTGGCTCATTTGAAAATTATTTCAAGTTTTAG

Protein Analysis

406

Amino Acids

45.29

Weight (kDa)

5.12

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 62 - 157 3.2e-31 BRCA1-associated protein 2
zf-UBP PF02148 221 - 282 1.9e-21 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
AccB7I CCANNNNNTGG 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 127
AccII CGCG 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 1084, 1111
AcuI CTGAAG 1 cut(s) 423
AcvI CACGTG 1 cut(s) 1180
AcyI GRCGYC 2 cut(s) 57, 186
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 3 cut(s) 323, 493, 1037
AfiI CCNNNNNNNGG 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 1177
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 618
AleI CACNNNNGTG 1 cut(s) 1182
AluBI AGCT 5 cut(s) 461, 659, 868, 1018, 1073
AluI AGCT 5 cut(s) 461, 659, 868, 1018, 1073
Alw26I GTCTC 1 cut(s) 1016
AoxI GGCC 4 cut(s) 87, 279, 739, 1059
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 1084, 1111
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 1 cut(s) 142
AsuC2I CCSGG 2 cut(s) 402, 472
AsuHPI GGTGA 3 cut(s) 58, 827, 833
AsuII TTCGAA 1 cut(s) 151
AvrII CCTAGG 1 cut(s) 113
BanII GRGCYC 2 cut(s) 264, 958
BbrPI CACGTG 1 cut(s) 1180
BbsI GAAGAC 2 cut(s) 60, 283
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 159
BccI CCATC 4 cut(s) 80, 356, 854, 1048
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 757
BcnI CCSGG 2 cut(s) 402, 472
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 2 cut(s) 114, 504
BfmI CTRYAG 1 cut(s) 961
BfuI GTATCC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 804
BisI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 6 cut(s) 82, 91, 94, 97, 100, 174
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 3 cut(s) 402, 472, 620
BmeRI GACNNNNNGTC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 955
BmrFI CCNGG 3 cut(s) 402, 472, 620
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 295, 523
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 2 cut(s) 60, 283
BpmI CTGGAG 2 cut(s) 465, 1163
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 3 cut(s) 542, 1040, 1175
BpuMI CCSGG 2 cut(s) 402, 472
BsaAI YACGTR 1 cut(s) 1180
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 2 cut(s) 57, 186
BsaJI CCNNGG 4 cut(s) 84, 113, 309, 689
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 2 cut(s) 512, 1146
Bse3DI GCAATG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 4 cut(s) 84, 113, 309, 689
BseGI GGATG 5 cut(s) 246, 352, 538, 652, 883
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 2 cut(s) 36, 402
BseNI ACTGG 2 cut(s) 512, 1146
BseRI GAGGAG 3 cut(s) 191, 468, 921
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 4 cut(s) 89, 281, 741, 1061
BsiSI CCGG 2 cut(s) 401, 471
BslFI GGGAC 2 cut(s) 203, 487
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 2 cut(s) 203, 487
BsnI GGCC 4 cut(s) 89, 281, 741, 1061
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 264, 958
Bsp143I GATC 2 cut(s) 316, 804
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 4 cut(s) 89, 281, 741, 1061
BspCNI CTCAG 2 cut(s) 35, 403
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 955
BspQI GCTCTTC 1 cut(s) 788
BspT104I TTCGAA 1 cut(s) 151
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 772
BsrI ACTGG 2 cut(s) 512, 1146
BssECI CCNNGG 4 cut(s) 84, 113, 309, 689
BssMI GATC 2 cut(s) 316, 804
BssNI GRCGYC 2 cut(s) 57, 186
BssT1I CCWWGG 4 cut(s) 84, 113, 309, 689
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 5 cut(s) 326, 429, 893, 920, 1035
Bst6I CTCTTC 2 cut(s) 209, 788
BstACI GRCGYC 2 cut(s) 57, 186
BstBAI YACGTR 1 cut(s) 1180
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 5 cut(s) 125, 260, 661, 800, 866
BstDEI CTNAG 2 cut(s) 22, 411
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 5 cut(s) 246, 352, 538, 652, 883
BstFNI CGCG 1 cut(s) 140
BstHHI GCGC 1 cut(s) 142
BstKTI GATC 2 cut(s) 319, 807
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 2 cut(s) 316, 804
BstMWI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 400, 470, 618
BstSFI CTRYAG 1 cut(s) 961
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 2 cut(s) 60, 283
BstX2I RGATCY 1 cut(s) 804
BstYI RGATCY 1 cut(s) 804
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 4 cut(s) 89, 281, 741, 1061
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 5 cut(s) 246, 352, 538, 652, 883
BtsIMutI CAGTG 4 cut(s) 30, 331, 447, 889
Cac8I GCNNGC 5 cut(s) 125, 260, 661, 800, 866
CfoI GCGC 1 cut(s) 142
CseI GACGC 3 cut(s) 65, 194, 833
Csp6I GTAC 3 cut(s) 322, 492, 1036
CviAII CATG 4 cut(s) 275, 310, 615, 743
CviQI GTAC 3 cut(s) 322, 492, 1036
DdeI CTNAG 2 cut(s) 22, 411
DpnI GATC 2 cut(s) 318, 806
DpnII GATC 2 cut(s) 316, 804
DraIII CACNNNGTG 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 610
DriI GACNNNNNGTC 1 cut(s) 190
DseDI GACNNNNNNGTC 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 209, 788
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 2 cut(s) 209, 788
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 4 cut(s) 84, 113, 309, 689
Eco24I GRGCYC 2 cut(s) 264, 958
Eco57I CTGAAG 1 cut(s) 423
Eco72I CACGTG 1 cut(s) 1180
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 84, 113, 309, 689
EcoT38I GRGCYC 2 cut(s) 264, 958
ErhI CCWWGG 4 cut(s) 84, 113, 309, 689
FaeI CATG 4 cut(s) 278, 313, 618, 746
FaqI GGGAC 2 cut(s) 203, 487
FatI CATG 4 cut(s) 274, 309, 614, 742
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
FokI GGATG 5 cut(s) 233, 359, 545, 659, 890
FriOI GRGCYC 2 cut(s) 264, 958
Fsp4HI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
FspBI CTAG 2 cut(s) 114, 504
GlaI GCGC 1 cut(s) 141
GluI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
GsuI CTGGAG 2 cut(s) 465, 1163
HaeIII GGCC 4 cut(s) 89, 281, 741, 1061
HapII CCGG 2 cut(s) 401, 471
HgaI GACGC 3 cut(s) 65, 194, 833
HhaI GCGC 1 cut(s) 142
Hin1I GRCGYC 2 cut(s) 57, 186
Hin1II CATG 4 cut(s) 278, 313, 618, 746
Hin6I GCGC 1 cut(s) 140
HinP1I GCGC 1 cut(s) 140
HincII GTYRAC 2 cut(s) 638, 988
HindII GTYRAC 2 cut(s) 638, 988
HinfI GANTC 8 cut(s) 15, 135, 191, 455, 475, 938, 1024, 1043
HpaII CCGG 2 cut(s) 401, 471
HphI GGTGA 3 cut(s) 58, 827, 833
Hpy166II GTNNAC 9 cut(s) 19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy188I TCNGA 4 cut(s) 14, 299, 760, 1090
Hpy188III TCNNGA 5 cut(s) 482, 785, 896, 942, 1154
Hpy8I GTNNAC 9 cut(s) 19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy99I CGWCG 4 cut(s) 172, 188, 212, 215
HpyAV CCTTC 4 cut(s) 244, 349, 731, 1096
HpyCH4III ACNGT 5 cut(s) 326, 429, 893, 920, 1035
HpyCH4IV ACGT 1 cut(s) 1179
HpyCH4V TGCA 2 cut(s) 1010, 1175
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
HpyF3I CTNAG 2 cut(s) 22, 411
HpySE526I ACGT 1 cut(s) 1179
Hsp92I GRCGYC 2 cut(s) 57, 186
Hsp92II CATG 4 cut(s) 278, 313, 618, 746
HspAI GCGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 316, 804
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 1 cut(s) 953
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 2 cut(s) 295, 523
MaeI CTAG 2 cut(s) 114, 504
MaeII ACGT 1 cut(s) 1179
MaeIII GTNAC 2 cut(s) 821, 914
MalI GATC 2 cut(s) 318, 806
MbiI CCGCTC 1 cut(s) 127
MboI GATC 2 cut(s) 316, 804
MboII GAAGA 8 cut(s) 65, 196, 283, 326, 400, 738, 805, 1129
MflI RGATCY 1 cut(s) 804
MhlI GDGCHC 2 cut(s) 264, 958
MluCI AATT 5 cut(s) 883, 945, 1084, 1111, 1204
MlyI GAGTC 4 cut(s) 24, 200, 469, 1018
MslI CAYNNNNRTG 2 cut(s) 580, 1182
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 401, 471
MspR9I CCNGG 3 cut(s) 402, 472, 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
NciI CCSGG 2 cut(s) 402, 472
NcoI CCATGG 1 cut(s) 309
NdeII GATC 2 cut(s) 316, 804
NlaIII CATG 4 cut(s) 278, 313, 618, 746
NlaIV GGNNCC 1 cut(s) 955
NmeAIII GCCGAG 3 cut(s) 85, 201, 214
NmuCI GTSAC 2 cut(s) 821, 914
NspV TTCGAA 1 cut(s) 151
OliI CACNNNNGTG 1 cut(s) 1182
PciSI GCTCTTC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 3 cut(s) 57, 173, 213
PfeI GAWTC 4 cut(s) 135, 455, 938, 1043
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 6 cut(s) 82, 91, 94, 97, 100, 174
PleI GAGTC 4 cut(s) 23, 199, 469, 1018
PmaCI CACGTG 1 cut(s) 1180
PmlI CACGTG 1 cut(s) 1180
PpsI GAGTC 4 cut(s) 23, 199, 469, 1018
Ppu21I YACGTR 1 cut(s) 1180
Psp6I CCWGG 1 cut(s) 618
PspCI CACGTG 1 cut(s) 1180
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 1 cut(s) 955
PsuI RGATCY 1 cut(s) 804
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 323, 493, 1037
RsaNI GTAC 3 cut(s) 322, 492, 1036
RseI CAYNNNNRTG 2 cut(s) 580, 1182
SapI GCTCTTC 1 cut(s) 788
SatI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
Sau3AI GATC 2 cut(s) 316, 804
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 4 cut(s) 24, 200, 469, 1018
ScrFI CCNGG 3 cut(s) 402, 472, 620
SduI GDGCHC 2 cut(s) 264, 958
SfaNI GCATC 2 cut(s) 295, 523
SfcI CTRYAG 1 cut(s) 961
SfuI TTCGAA 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 580, 1182
SmlI CTYRAG 3 cut(s) 521, 1019, 1154
SmoI CTYRAG 3 cut(s) 521, 1019, 1154
Sse9I AATT 5 cut(s) 883, 945, 1084, 1111, 1204
SspI AATATT 1 cut(s) 678
SspMI CTAG 2 cut(s) 114, 504
StyD4I CCNGG 3 cut(s) 400, 470, 618
StyI CCWWGG 4 cut(s) 84, 113, 309, 689
TaaI ACNGT 5 cut(s) 326, 429, 893, 920, 1035
TaiI ACGT 1 cut(s) 1182
TaqI TCGA 5 cut(s) 51, 151, 270, 895, 1000
TasI AATT 5 cut(s) 883, 945, 1084, 1111, 1204
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 5 cut(s) 83, 92, 95, 98, 101
TfiI GAWTC 4 cut(s) 135, 455, 938, 1043
TscAI CASTG 4 cut(s) 30, 331, 447, 896
TseFI GTSAC 2 cut(s) 821, 914
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 2 cut(s) 821, 914
TspDTI ATGAA 5 cut(s) 235, 283, 368, 564, 1056
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 4 cut(s) 30, 331, 447, 896
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 25
XapI RAATTY 2 cut(s) 1084, 1111
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 2 cut(s) 114, 504
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.