Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

11685658 .. 11689879

Gene Structure 4222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAGGTTGAGTATTTCGGAGACTCTTTTGGTGAGCTTTCTCGGAGAAATTCTAGCCCAATAACTCCTAGGTCAGCTCCGGTGAGCAATGCAGCTGCTTCCGAGAGTGTCCGGAGCTCCTCGAACAGTATGACTTTCCATTGTGACAATACAAGTACACCAGATGTTGACAAAAATGCAGGAAAGAAGAAAAGAGGTTCAAGATATACAGCTGGAGGTCTACGTCAGTTCAGTGCCATAGTTTGTAGCAAGTTGAAGAGCAAGGGAAGAGCAACATATAATGAGGTTGCAGATGAGATCATTTCAGAGTTACCTGGAATTTACGGTGAAACAGAAGCTTTGAGTGAGTTTGATGAGAAAAACATACGACGACGAGTATATGATGCATTAAATGTTCTTATGGCAATGGATATCATCACCAAAGAGAAAAAACAAATCCAGTGGAAGGGACTTCCAGATACAAATGTTATTGATCTGGAAGGTATTAAGGCTCAGCGGGTTAAATTGGTGGGTAGGATTGGTGCAAAAGAGGCTTACTTGAAAGACTTGGAAGAACAAATGGCAGATCTCCAGAATTTGATGTTGCGTAATAAGCAGTTGATCAAGAGTGGAAACAGTCGCCACAAAGGATTTTCTTTTCCATTTATACTGGCTCAGACAAGCAATAATGCTACGGTTGAGATTGAGATTTCTGAAGATATGCAGTTGGTGCACTGTGACTTCAATAGTACCCCTTTCTCCTTGCACGATGATACTTCCATTCTGAAGCTATTGCGGTGCCACCAATTGCCAGAAAGTAGAAATGTGTCTCAAAGTTCTTCAGTTTACTCGTCTTCAAGTTCTGGCATGGCTTCTGGATGCACCAGACCGTTTCTTTGGAACTCTGAAACAGAAACTCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

301

Amino Acids

33.47

Weight (kDa)

7.63

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_E2F_TDP	PF02319	72 - 150	8.3e-17	E2F/DP family winged-helix DNA-binding domain
DP	PF08781	159 - 269	1.2e-26	Transcription factor DP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	777
AccI	GTMKAC	1 cut(s)	220
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	2 cut(s)	496, 775
AcsI	RAATTY	3 cut(s)	49, 318, 574
AcuI	CTGAAG	3 cut(s)	714, 785, 804
AfaI	GTAC	2 cut(s)	157, 730
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	5 cut(s)	201, 256, 541, 724, 837
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	7 cut(s)	37, 77, 95, 117, 212, 338, 769
AluI	AGCT	7 cut(s)	37, 77, 95, 117, 212, 338, 769
Alw21I	GWGCWC	2 cut(s)	119, 714
Alw26I	GTCTC	2 cut(s)	15, 813
Alw44I	GTGCAC	1 cut(s)	710
Aor13HI	TCCGGA	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	92, 95
ApoI	RAATTY	3 cut(s)	49, 318, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
AspA2I	CCTAGG	1 cut(s)	68
AsuHPI	GGTGA	4 cut(s)	44, 94, 338, 409
AvrII	CCTAGG	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	714
BaeI	ACNNNNGTAYC	2 cut(s)	450, 483
BanI	GGYRCC	1 cut(s)	777
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	119, 714
BbvI	GCAGC	2 cut(s)	82, 104
BciT130I	CCWGG	1 cut(s)	315
BclI	TGATCA	1 cut(s)	600
BcoDI	GTCTC	2 cut(s)	15, 813
BfaI	CTAG	2 cut(s)	54, 69
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	2 cut(s)	93, 96
BlnI	CCTAGG	1 cut(s)	68
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	2 cut(s)	94, 97
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	779
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	373, 848
BpiI	GAAGAC	1 cut(s)	825
BpmI	CTGGAG	2 cut(s)	234, 554
Bpu1102I	GCTNAGC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	68
BsaWI	WCCGGW	2 cut(s)	79, 111
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 880
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	2 cut(s)	439, 654
Bse3DI	GCAATG	2 cut(s)	94, 411
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	863
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	2 cut(s)	94, 411
BseMII	CTCAG	2 cut(s)	506, 668
BseNI	ACTGG	2 cut(s)	439, 654
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	82, 104
BshNI	GGYRCC	1 cut(s)	777
BsiHKAI	GWGCWC	2 cut(s)	119, 714
BsiSI	CCGG	2 cut(s)	80, 112
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	15, 813
BsmFI	GGGAC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	119, 714
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	297, 472, 565, 600
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	2 cut(s)	496, 775
BspCNI	CTCAG	2 cut(s)	505, 667
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	779
BspQI	GCTCTTC	2 cut(s)	251, 262
BspT107I	GGYRCC	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	94, 411
BsrI	ACTGG	2 cut(s)	439, 654
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	297, 472, 565, 600
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	6 cut(s)	128, 326, 617, 676, 716, 870
Bst6I	CTCTTC	2 cut(s)	251, 262
BstAPI	GCANNNNNTGC	1 cut(s)	709
BstDEI	CTNAG	2 cut(s)	492, 654
BstF5I	GGATG	1 cut(s)	863
BstKTI	GATC	4 cut(s)	300, 475, 568, 603
BstMAI	GTCTC	2 cut(s)	15, 813
BstMBI	GATC	4 cut(s)	297, 472, 565, 600
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 592, 709
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	2 cut(s)	82, 104
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	863
BtsIMutI	CAGTG	3 cut(s)	238, 446, 712
Csp6I	GTAC	2 cut(s)	156, 729
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CviAII	CATG	1 cut(s)	847
CviQI	GTAC	2 cut(s)	156, 729
DdeI	CTNAG	2 cut(s)	492, 654
DpnI	GATC	4 cut(s)	299, 474, 567, 602
DpnII	GATC	4 cut(s)	297, 472, 565, 600
Eam1104I	CTCTTC	2 cut(s)	251, 262
EarI	CTCTTC	2 cut(s)	251, 262
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	3 cut(s)	714, 785, 804
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	1 cut(s)	850
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	1 cut(s)	846
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	600
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	93, 96
FokI	GGATG	1 cut(s)	870
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	93, 96
FspBI	CTAG	2 cut(s)	54, 69
GluI	GCNGC	2 cut(s)	93, 96
GsuI	CTGGAG	2 cut(s)	234, 554
HapII	CCGG	2 cut(s)	80, 112
Hin1II	CATG	1 cut(s)	850
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	80, 112
HphI	GGTGA	4 cut(s)	44, 94, 338, 409
Hpy166II	GTNNAC	5 cut(s)	158, 169, 221, 712, 826
Hpy188I	TCNGA	8 cut(s)	20, 45, 103, 307, 657, 694, 765, 886
Hpy188III	TCNNGA	7 cut(s)	112, 201, 455, 476, 571, 604, 855
Hpy8I	GTNNAC	5 cut(s)	158, 169, 221, 712, 826
Hpy99I	CGWCG	2 cut(s)	372, 375
HpyAV	CCTTC	2 cut(s)	439, 473
HpyCH4III	ACNGT	6 cut(s)	128, 326, 617, 676, 716, 870
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	9 cut(s)	92, 179, 290, 386, 524, 703, 712, 745, 861
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 592, 709
HpyF3I	CTNAG	2 cut(s)	492, 654
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	850
Kpn2I	TCCGGA	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	297, 472, 565, 600
LguI	GCTCTTC	2 cut(s)	251, 262
LmnI	GCTCC	3 cut(s)	82, 114, 122
Lsp1109I	GCAGC	2 cut(s)	82, 104
LweI	GCATC	2 cut(s)	373, 848
MaeI	CTAG	2 cut(s)	54, 69
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	3 cut(s)	143, 309, 716
MalI	GATC	4 cut(s)	299, 474, 567, 602
MboI	GATC	4 cut(s)	297, 472, 565, 600
MboII	GAAGA	7 cut(s)	199, 268, 279, 563, 707, 810, 825
MfeI	CAATTG	1 cut(s)	785
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	119, 714
MluCI	AATT	5 cut(s)	49, 318, 503, 574, 785
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	5 cut(s)	130, 188, 209, 277, 523
Mph1103I	ATGCAT	1 cut(s)	388
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	3 cut(s)	389, 486, 501
MspA1I	CMGCKG	3 cut(s)	95, 212, 496
MspI	CCGG	2 cut(s)	80, 112
MspR9I	CCNGG	1 cut(s)	315
MunI	CAATTG	1 cut(s)	785
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	530, 592, 709
NdeII	GATC	4 cut(s)	297, 472, 565, 600
NlaIII	CATG	1 cut(s)	850
NlaIV	GGNNCC	1 cut(s)	779
NmuCI	GTSAC	2 cut(s)	143, 716
NsiI	ATGCAT	1 cut(s)	388
PciSI	GCTCTTC	2 cut(s)	251, 262
PkrI	GCNGC	2 cut(s)	94, 97
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	779
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	2 cut(s)	95, 212
RsaI	GTAC	2 cut(s)	157, 730
RsaNI	GTAC	2 cut(s)	156, 729
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	251, 262
SaqAI	TTAA	3 cut(s)	389, 486, 501
SatI	GCNGC	2 cut(s)	93, 96
Sau3AI	GATC	4 cut(s)	297, 472, 565, 600
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	119, 714
SfaNI	GCATC	2 cut(s)	373, 848
Sse9I	AATT	5 cut(s)	49, 318, 503, 574, 785
SsiI	CCGC	2 cut(s)	496, 775
SspMI	CTAG	2 cut(s)	54, 69
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	6 cut(s)	128, 326, 617, 676, 716, 870
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	122
TasI	AATT	5 cut(s)	49, 318, 503, 574, 785
TatI	WGTACW	1 cut(s)	155
Tru1I	TTAA	3 cut(s)	389, 486, 501
Tru9I	TTAA	3 cut(s)	389, 486, 501
TscAI	CASTG	3 cut(s)	238, 446, 719
TseFI	GTSAC	2 cut(s)	143, 716
TseI	GCWGC	2 cut(s)	92, 95
Tsp45I	GTSAC	2 cut(s)	143, 716
TspRI	CASTG	3 cut(s)	238, 446, 719
VneI	GTGCAC	1 cut(s)	710
XapI	RAATTY	3 cut(s)	49, 318, 574
XmaJI	CCTAGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	54, 69
Zsp2I	ATGCAT	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.