Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

35587489 .. 35587869

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG162100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTTTGCCATTCCTAAGGCCTTATTCCCTCCCACCAACGATCACCACTTCTCTCTCTTCCATCGCAACCACCACAAACACCTTCACGCTTCTCTCTCTTCCCCGTTCGAGTCGACTCAACGATTCGCAATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCTGTCAACCTTGAAGACGTTGAGTTCACCACCATCTACGCCACCACCGCCCAATCAAACCCTAAGTTCAACGAGCGGAGAGGAATCGCGCACCTATTTCAAACACGAGGTAACTTGTCGCTGCAGAGCCACGCCGCCGAGTCCATTCTCCTCTTCGATGCAACGTTTGGGCATGATGACACTGTCGACGTGGGGCTGTAAGATTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.69

Weight (kDa)

9.43

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccBSI	CCGCTC	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	115, 356
AccII	CGCG	1 cut(s)	259
AciI	CCGC	3 cut(s)	218, 246, 305
AclI	AACGTT	1 cut(s)	334
AdeI	CACNNNGTG	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	184, 240, 271
AjiI	CACGTC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	37, 189
AxyI	CCTNAGG	1 cut(s)	17
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	71, 211
BfmI	CTRYAG	1 cut(s)	292
BisI	GCNGC	2 cut(s)	292, 305
BlsI	GCNGC	2 cut(s)	293, 306
BmgBI	CACGTC	1 cut(s)	360
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse21I	CCTNAGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	259
BshFI	GGCC	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	156
BsnI	GGCC	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	3 cut(s)	218, 246, 305
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	259
BspMAI	CTGCAG	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	137
BssMI	GATC	1 cut(s)	42
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	3 cut(s)	64, 105, 328
BstDEI	CTNAG	4 cut(s)	17, 153, 233, 378
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstSFI	CTRYAG	1 cut(s)	292
BstUI	CGCG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	161, 350
CfoI	GCGC	1 cut(s)	261
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	3 cut(s)	22, 299, 366
CviKI_1	RGCY	3 cut(s)	22, 299, 366
DdeI	CTNAG	4 cut(s)	17, 153, 233, 378
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DraIII	CACNNNGTG	1 cut(s)	156
Eam1104I	CTCTTC	3 cut(s)	64, 105, 328
EarI	CTCTTC	3 cut(s)	64, 105, 328
Eco147I	AGGCCT	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	17
FaeI	CATG	1 cut(s)	346
FaiI	YATR	1 cut(s)	344
FatI	CATG	1 cut(s)	342
FblI	GTMKAC	2 cut(s)	115, 356
Fnu4HI	GCNGC	2 cut(s)	292, 305
Fsp4HI	GCNGC	2 cut(s)	292, 305
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	2 cut(s)	292, 305
HaeIII	GGCC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	3 cut(s)	116, 177, 357
HindII	GTYRAC	3 cut(s)	116, 177, 357
HinfI	GANTC	7 cut(s)	112, 117, 125, 146, 254, 310, 373
HphI	GGTGA	2 cut(s)	37, 189
Hpy166II	GTNNAC	6 cut(s)	116, 150, 159, 177, 197, 357
Hpy188I	TCNGA	1 cut(s)	145
Hpy8I	GTNNAC	6 cut(s)	116, 150, 159, 177, 197, 357
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	3 cut(s)	188, 334, 359
HpyCH4V	TGCA	2 cut(s)	294, 331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	4 cut(s)	17, 153, 233, 378
HpySE526I	ACGT	3 cut(s)	188, 334, 359
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	1 cut(s)	185
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	3 cut(s)	188, 334, 359
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	44
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	1 cut(s)	42
MboII	GAAGA	5 cut(s)	51, 92, 129, 196, 315
MlyI	GAGTC	4 cut(s)	111, 121, 155, 319
MnlI	CCTC	5 cut(s)	41, 151, 244, 271, 331
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	346
NmeAIII	GCCGAG	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	22
PfeI	GAWTC	3 cut(s)	125, 254, 373
PflFI	GACNNNGTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	156
PkrI	GCNGC	2 cut(s)	293, 306
PleI	GAGTC	4 cut(s)	111, 120, 154, 318
PpsI	GAGTC	4 cut(s)	111, 120, 154, 318
Psp1406I	AACGTT	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	352
SalI	GTCGAC	2 cut(s)	114, 355
SatI	GCNGC	2 cut(s)	292, 305
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	4 cut(s)	111, 121, 155, 319
SetI	ASST	7 cut(s)	86, 182, 191, 266, 282, 337, 362
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	292
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	3 cut(s)	218, 246, 305
StuI	AGGCCT	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	3 cut(s)	191, 337, 362
TaqI	TCGA	4 cut(s)	110, 115, 326, 356
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	125, 254, 373
TscAI	CASTG	2 cut(s)	161, 357
TseI	GCWGC	1 cut(s)	291
TspRI	CASTG	2 cut(s)	161, 357
Tth111I	GACNNNGTC	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	156
XmiI	GTMKAC	2 cut(s)	115, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.