Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Forward (+)

21073042 .. 21073353

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTCTTCCTCCGAATCCACTCAGTGGACACCAACCACCCTGTCAACCTCGAAGACGCTGAGTTCACCACCATCTCCGCTGCCGCGCAATCAAACTTTAGGTTCAGCGTGTGGCGAGGAATCGCGCATCTGTTCCGAAGAAGAAGAGGAAGCTTGTCATCGCTGCCGAGCCACGGCGCCAAGTCCTCTCTCCTCTCCGTCGTCGCCGTCCCGAACTACTTGCCGTTCAAAGACTTTATCTGCTTCTACGAATCCCGCCTGTCGCCGAACTCGTCTTCATCAGGTGGAAGAGCAATCGGGAGCGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

104

Amino Acids

11.32

Weight (kDa)

10.38

Isoelectric Point (pI)

54.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	303
AccII	CGCG	2 cut(s)	86, 125
AciI	CCGC	4 cut(s)	78, 84, 256, 303
AcyI	GRCGYC	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	2 cut(s)	25, 173
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	2 cut(s)	153, 309
AluI	AGCT	2 cut(s)	153, 309
ApeKI	GCWGC	2 cut(s)	80, 163
AspLEI	GCGC	3 cut(s)	88, 127, 179
AsuHPI	GGTGA	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	60, 267
BbvI	GCAGC	2 cut(s)	67, 150
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	3 cut(s)	190, 191, 208
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BfaI	CTAG	1 cut(s)	310
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	3 cut(s)	81, 84, 164
BlsI	GCNGC	3 cut(s)	82, 85, 165
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	2 cut(s)	60, 267
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 173
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	2 cut(s)	25, 173
BseMII	CTCAG	2 cut(s)	36, 51
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	67, 150
Bsh1236I	CGCG	2 cut(s)	86, 125
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	25, 173
BsmFI	GGGAC	1 cut(s)	194
BspACI	CCGC	4 cut(s)	78, 84, 256, 303
BspCNI	CTCAG	2 cut(s)	35, 52
BspFNI	CGCG	2 cut(s)	86, 125
BspLI	GGNNCC	1 cut(s)	178
BspQI	GCTCTTC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	139, 283
BstACI	GRCGYC	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	22, 60
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	86, 125
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	88, 127, 179
BstUI	CGCG	2 cut(s)	86, 125
BstV1I	GCAGC	2 cut(s)	67, 150
BstV2I	GAAGAC	2 cut(s)	60, 267
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	30
CfoI	GCGC	3 cut(s)	88, 127, 179
CseI	GACGC	1 cut(s)	65
CviJI	RGCY	3 cut(s)	153, 171, 309
CviKI_1	RGCY	3 cut(s)	153, 171, 309
DdeI	CTNAG	2 cut(s)	22, 60
DinI	GGCGCC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	139, 283
EarI	CTCTTC	2 cut(s)	139, 283
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaqI	GGGAC	1 cut(s)	194
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	81, 84, 164
Fsp4HI	GCNGC	3 cut(s)	81, 84, 164
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	3 cut(s)	87, 126, 178
GluI	GCNGC	3 cut(s)	81, 84, 164
HaeII	RGCGCY	1 cut(s)	180
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	88, 127, 179
Hin1I	GRCGYC	1 cut(s)	177
Hin6I	GCGC	3 cut(s)	86, 125, 177
HinP1I	GCGC	3 cut(s)	86, 125, 177
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	151
HinfI	GANTC	3 cut(s)	15, 120, 251
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	28, 46, 66
Hpy188I	TCNGA	2 cut(s)	14, 137
Hpy188III	TCNNGA	2 cut(s)	211, 298
Hpy8I	GTNNAC	3 cut(s)	28, 46, 66
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyF3I	CTNAG	2 cut(s)	22, 60
Hsp92I	GRCGYC	1 cut(s)	177
HspAI	GCGC	3 cut(s)	86, 125, 177
KasI	GGCGCC	1 cut(s)	176
LguI	GCTCTTC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	54, 267, 272
Lsp1109I	GCAGC	2 cut(s)	67, 150
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	310
MbiI	CCGCTC	1 cut(s)	303
MboII	GAAGA	6 cut(s)	65, 150, 153, 156, 267, 300
Mly113I	GGCGCC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	20, 59, 110, 140, 196, 203
MspA1I	CMGCKG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	86, 125
NarI	GGCGCC	1 cut(s)	177
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	269
PfeI	GAWTC	3 cut(s)	15, 120, 251
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	82, 85, 165
PluTI	GGCGCC	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	178
SapI	GCTCTTC	1 cut(s)	283
SatI	GCNGC	3 cut(s)	81, 84, 164
SetI	ASST	5 cut(s)	51, 104, 155, 286, 311
SfaNI	GCATC	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	178
SsiI	CCGC	4 cut(s)	78, 84, 256, 303
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	310
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	3 cut(s)	15, 120, 251
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	2 cut(s)	80, 163
TspDTI	ATGAA	1 cut(s)	267
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.