Rh2AG033700

Brca1-associated

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
2461949 .. 2466084
4136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG033700.1

Sequence Viewer

Length: 1221 bp
ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCCGTCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCCGCCAAGGCCGCCGCCGCCGCCCAATCAAAACCTAGGTTCAGCGAGCGGAGAGGAATCGCGCACCTCTTTCGAACACGAGGAAACTCGTCGCTGCCGAGCCACGGCGCCGAGTCCACTCTCCTCTTCGTTGTCGCCGTCCCCAACTACCTCTCCTTCAACGACTTCATCCGCTTCTGCGAGCCCCGCCTCGACCATGTCGCCGACCTCGTCTTCATCAGAAACGATGCCATGGAAGATCGGTACAGTGTTGTGATTAGGCTTATGGATGAGATGAAGGCAGATGGATTTTATGGCAGTTTCAATGGGAAGAAGTATTCACCGGGCGAGGCTGAGGTGTGCCATATACTGTTTCTGGCTTCAGTGGACTACACAGATTCAGCTGAAATAGCCGACACTCCTCCAGATTTATGTACCGAACTGCCTAGTTGCCCAGTTTGCCTTGAGAGATTGGATGCGGACACAAGTGGAATAGCAACTACACTATGCGACCATTCATTTCAATGTCCTTGTATCTCAAAATGGACTTATTTGTCATGCCAGGTTTGCCGATTGTGTCAACAGCAGGATGACAATCCAGCTTGCTCTGTCTGTGGAATATTGGAAAATCCTTGGGTTTGTGTAATATGTGGTTTTGTAGGGTGTGGAAGATATAAAGAAGGCCATGCTGTTAGGCACTCGGAGGATACACAGCATTGCTATTCTCTTGACTTGAAGAGCCAGCAGATCTGGGATTATGTTGGTGATGCTTATGTTCACCGCCTGAACCAATCAAAAGTTGATGGCAAGCTAATAACGGATGTCAATTCTCACTGTCGAGAGTTGGGAGGAGATTGTGACAGTTGTGAATGTAGTGAGGATTCTGGAATTAGTGGAGCCCTCTATAGTAGCAAAGTTGAAACTATTGTTGACGAGTATAATCGACTTCTTGCAAGTCAGCTTGAGACTCAAAGACAGTACTATGAATCTCTACTGATGGAGGCCAAAAGTAAAGCTGAAAGTTCAAATTCAGAAGCATTGGAGAAGGCTGTAAATTTGAAGATACAGGATCTTCAAAGTAAACTGGAGAAATCTCTTGAGGAAAAAAAGGCTGTTGCACACGTGAGTGCTATTGGCTCATTTGAAAATTATTTCAAGTTTTAG

Protein Analysis

406

Amino Acids

45.27

Weight (kDa)

5.07

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRAP2 PF07576 63 - 157 5.8e-31 BRCA1-associated protein 2
zf-UBP PF02148 221 - 282 1.9e-21 Zn-finger in ubiquitin-hydrolases and other protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 127
AccII CGCG 1 cut(s) 140
AclWI GGATC 1 cut(s) 1134
AcsI RAATTY 2 cut(s) 1084, 1111
AcuI CTGAAG 1 cut(s) 423
AcvI CACGTG 1 cut(s) 1180
AcyI GRCGYC 2 cut(s) 57, 186
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 3 cut(s) 323, 493, 1037
AfiI CCNNNNNNNGG 2 cut(s) 25, 182
AflIII ACRYGT 1 cut(s) 1177
AjnI CCWGG 1 cut(s) 618
AleI CACNNNNGTG 1 cut(s) 1182
AluBI AGCT 5 cut(s) 461, 659, 868, 1018, 1073
AluI AGCT 5 cut(s) 461, 659, 868, 1018, 1073
Alw26I GTCTC 1 cut(s) 1016
AlwI GGATC 1 cut(s) 1134
AoxI GGCC 3 cut(s) 87, 739, 1059
ApeKI GCWGC 1 cut(s) 172
ApoI RAATTY 2 cut(s) 1084, 1111
AspA2I CCTAGG 1 cut(s) 113
AspLEI GCGC 2 cut(s) 142, 188
AsuC2I CCSGG 1 cut(s) 402
AsuHPI GGTGA 4 cut(s) 58, 390, 827, 833
AsuII TTCGAA 1 cut(s) 151
AvrII CCTAGG 1 cut(s) 113
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 2 cut(s) 264, 958
BauI CACGAG 1 cut(s) 156
BbrPI CACGTG 1 cut(s) 1180
BbsI GAAGAC 2 cut(s) 60, 283
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 159
BccI CCATC 4 cut(s) 80, 356, 854, 1048
BceAI ACGGC 2 cut(s) 199, 200
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 757
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 1 cut(s) 1016
BfaI CTAG 2 cut(s) 114, 504
BfmI CTRYAG 1 cut(s) 961
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 804
BisI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
BlnI CCTAGG 1 cut(s) 113
BlsI GCNGC 6 cut(s) 82, 91, 94, 97, 100, 174
BmcAI AGTACT 1 cut(s) 1037
Bme1390I CCNGG 2 cut(s) 402, 620
BmiI GGNNCC 2 cut(s) 187, 955
BmrFI CCNGG 2 cut(s) 402, 620
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 3 cut(s) 295, 523, 814
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 2 cut(s) 60, 283
BpmI CTGGAG 2 cut(s) 465, 1163
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 3 cut(s) 542, 1040, 1175
BpuMI CCSGG 1 cut(s) 402
BsaAI YACGTR 1 cut(s) 1180
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 2 cut(s) 57, 186
BsaJI CCNNGG 5 cut(s) 84, 113, 181, 309, 689
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 182
Bse1I ACTGG 2 cut(s) 512, 1146
Bse3DI GCAATG 1 cut(s) 772
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 5 cut(s) 84, 113, 181, 309, 689
BseGI GGATG 5 cut(s) 246, 352, 538, 652, 883
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 25, 182
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 2 cut(s) 36, 402
BseNI ACTGG 2 cut(s) 512, 1146
BseRI GAGGAG 3 cut(s) 191, 468, 921
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 3 cut(s) 89, 741, 1061
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 401
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 25, 182
BsmAI GTCTC 1 cut(s) 1016
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 3 cut(s) 89, 741, 1061
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 264, 958
Bsp143I GATC 3 cut(s) 316, 804, 1126
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 3 cut(s) 89, 741, 1061
BspCNI CTCAG 2 cut(s) 35, 403
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 187, 955
BspPI GGATC 1 cut(s) 1134
BspQI GCTCTTC 1 cut(s) 788
BspT104I TTCGAA 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 772
BsrI ACTGG 2 cut(s) 512, 1146
BssECI CCNNGG 5 cut(s) 84, 113, 181, 309, 689
BssMI GATC 3 cut(s) 316, 804, 1126
BssNI GRCGYC 2 cut(s) 57, 186
BssSI CACGAG 1 cut(s) 156
BssT1I CCWWGG 4 cut(s) 84, 113, 309, 689
Bst2BI CACGAG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 5 cut(s) 326, 429, 893, 920, 1035
Bst6I CTCTTC 2 cut(s) 209, 788
BstACI GRCGYC 2 cut(s) 57, 186
BstBAI YACGTR 1 cut(s) 1180
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 5 cut(s) 125, 260, 661, 800, 866
BstDEI CTNAG 2 cut(s) 22, 411
BstDSI CCRYGG 2 cut(s) 181, 309
BstF5I GGATG 5 cut(s) 246, 352, 538, 652, 883
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 142, 188
BstKTI GATC 3 cut(s) 319, 807, 1129
BstMAI GTCTC 1 cut(s) 1016
BstMBI GATC 3 cut(s) 316, 804, 1126
BstMWI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
BstNI CCWGG 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 400, 618
BstSFI CTRYAG 1 cut(s) 961
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 2 cut(s) 60, 283
BstX2I RGATCY 2 cut(s) 804, 1126
BstYI RGATCY 2 cut(s) 804, 1126
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 3 cut(s) 89, 741, 1061
BtgI CCRYGG 2 cut(s) 181, 309
BtsCI GGATG 5 cut(s) 246, 352, 538, 652, 883
BtsIMutI CAGTG 4 cut(s) 30, 331, 447, 889
Cac8I GCNNGC 5 cut(s) 125, 260, 661, 800, 866
CfoI GCGC 2 cut(s) 142, 188
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 322, 492, 1036
CviAII CATG 4 cut(s) 275, 310, 615, 743
CviQI GTAC 3 cut(s) 322, 492, 1036
DdeI CTNAG 2 cut(s) 22, 411
DinI GGCGCC 1 cut(s) 187
DpnI GATC 3 cut(s) 318, 806, 1128
DpnII GATC 3 cut(s) 316, 804, 1126
DraIII CACNNNGTG 1 cut(s) 25
DrdI GACNNNNNNGTC 1 cut(s) 610
DseDI GACNNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 2 cut(s) 209, 788
EarI CTCTTC 2 cut(s) 209, 788
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 4 cut(s) 84, 113, 309, 689
Eco24I GRGCYC 2 cut(s) 264, 958
Eco57I CTGAAG 1 cut(s) 423
Eco72I CACGTG 1 cut(s) 1180
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 84, 113, 309, 689
EcoT38I GRGCYC 2 cut(s) 264, 958
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 4 cut(s) 84, 113, 309, 689
FaeI CATG 4 cut(s) 278, 313, 618, 746
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 274, 309, 614, 742
FauI CCCGC 1 cut(s) 272
Fnu4HI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
FokI GGATG 5 cut(s) 233, 359, 545, 659, 890
FriOI GRGCYC 2 cut(s) 264, 958
Fsp4HI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
FspBI CTAG 2 cut(s) 114, 504
GlaI GCGC 2 cut(s) 141, 187
GluI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
GsuI CTGGAG 2 cut(s) 465, 1163
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 3 cut(s) 89, 741, 1061
HapII CCGG 1 cut(s) 401
HgaI GACGC 1 cut(s) 65
HhaI GCGC 2 cut(s) 142, 188
Hin1I GRCGYC 2 cut(s) 57, 186
Hin1II CATG 4 cut(s) 278, 313, 618, 746
Hin6I GCGC 2 cut(s) 140, 186
HinP1I GCGC 2 cut(s) 140, 186
HincII GTYRAC 2 cut(s) 638, 988
HindII GTYRAC 2 cut(s) 638, 988
HinfI GANTC 7 cut(s) 15, 135, 191, 455, 938, 1024, 1043
HpaII CCGG 1 cut(s) 401
HphI GGTGA 4 cut(s) 58, 390, 827, 833
Hpy166II GTNNAC 9 cut(s) 19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy188I TCNGA 4 cut(s) 14, 299, 760, 1090
Hpy188III TCNNGA 5 cut(s) 482, 785, 896, 942, 1154
Hpy8I GTNNAC 9 cut(s) 19, 28, 66, 195, 445, 638, 835, 988, 1139
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 4 cut(s) 244, 349, 731, 1096
HpyCH4III ACNGT 5 cut(s) 326, 429, 893, 920, 1035
HpyCH4IV ACGT 1 cut(s) 1179
HpyCH4V TGCA 2 cut(s) 1010, 1175
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
HpyF3I CTNAG 2 cut(s) 22, 411
HpySE526I ACGT 1 cut(s) 1179
Hsp92I GRCGYC 2 cut(s) 57, 186
Hsp92II CATG 4 cut(s) 278, 313, 618, 746
HspAI GCGC 2 cut(s) 140, 186
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 3 cut(s) 316, 804, 1126
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 1 cut(s) 953
Lsp1109I GCAGC 1 cut(s) 159
LweI GCATC 3 cut(s) 295, 523, 814
MaeI CTAG 2 cut(s) 114, 504
MaeII ACGT 1 cut(s) 1179
MaeIII GTNAC 1 cut(s) 914
MalI GATC 3 cut(s) 318, 806, 1128
MbiI CCGCTC 1 cut(s) 127
MboI GATC 3 cut(s) 316, 804, 1126
MboII GAAGA 9 cut(s) 65, 196, 283, 326, 400, 738, 805, 1121, 1129
MflI RGATCY 2 cut(s) 804, 1126
MhlI GDGCHC 2 cut(s) 264, 958
MluCI AATT 5 cut(s) 883, 945, 1084, 1111, 1204
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 3 cut(s) 24, 200, 1018
MslI CAYNNNNRTG 2 cut(s) 580, 1182
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 402, 620
MvaI CCWGG 1 cut(s) 620
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 8 cut(s) 86, 89, 95, 98, 264, 467, 516, 624
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 402
NcoI CCATGG 1 cut(s) 309
NdeII GATC 3 cut(s) 316, 804, 1126
NlaIII CATG 4 cut(s) 278, 313, 618, 746
NlaIV GGNNCC 2 cut(s) 187, 955
NmeAIII GCCGAG 3 cut(s) 85, 201, 214
NmuCI GTSAC 1 cut(s) 914
NspV TTCGAA 1 cut(s) 151
OliI CACNNNNGTG 1 cut(s) 1182
PciSI GCTCTTC 1 cut(s) 788
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 173, 213, 285
PfeI GAWTC 4 cut(s) 135, 455, 938, 1043
PflFI GACNNNGTC 2 cut(s) 275, 287
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 6 cut(s) 82, 91, 94, 97, 100, 174
PleI GAGTC 3 cut(s) 23, 199, 1018
PluTI GGCGCC 1 cut(s) 189
PmaCI CACGTG 1 cut(s) 1180
PmlI CACGTG 1 cut(s) 1180
PpsI GAGTC 3 cut(s) 23, 199, 1018
Ppu21I YACGTR 1 cut(s) 1180
Psp6I CCWGG 1 cut(s) 618
PspCI CACGTG 1 cut(s) 1180
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 187, 955
PsuI RGATCY 2 cut(s) 804, 1126
PsyI GACNNNGTC 2 cut(s) 275, 287
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 323, 493, 1037
RsaNI GTAC 3 cut(s) 322, 492, 1036
RseI CAYNNNNRTG 2 cut(s) 580, 1182
SapI GCTCTTC 1 cut(s) 788
SatI GCNGC 6 cut(s) 81, 90, 93, 96, 99, 173
Sau3AI GATC 3 cut(s) 316, 804, 1126
ScaI AGTACT 1 cut(s) 1037
SchI GAGTC 3 cut(s) 24, 200, 1018
ScrFI CCNGG 2 cut(s) 402, 620
SduI GDGCHC 2 cut(s) 264, 958
SfaNI GCATC 3 cut(s) 295, 523, 814
SfcI CTRYAG 1 cut(s) 961
SfoI GGCGCC 1 cut(s) 187
SfuI TTCGAA 1 cut(s) 151
SmiMI CAYNNNNRTG 2 cut(s) 580, 1182
SmlI CTYRAG 3 cut(s) 521, 1019, 1154
SmoI CTYRAG 3 cut(s) 521, 1019, 1154
Sse9I AATT 5 cut(s) 883, 945, 1084, 1111, 1204
SspDI GGCGCC 1 cut(s) 185
SspI AATATT 1 cut(s) 678
SspMI CTAG 2 cut(s) 114, 504
StyD4I CCNGG 2 cut(s) 400, 618
StyI CCWWGG 4 cut(s) 84, 113, 309, 689
TaaI ACNGT 5 cut(s) 326, 429, 893, 920, 1035
TaiI ACGT 1 cut(s) 1182
TaqI TCGA 5 cut(s) 51, 151, 270, 895, 1000
TasI AATT 5 cut(s) 883, 945, 1084, 1111, 1204
TatI WGTACW 1 cut(s) 1035
TauI GCSGC 5 cut(s) 83, 92, 95, 98, 101
TfiI GAWTC 4 cut(s) 135, 455, 938, 1043
TscAI CASTG 4 cut(s) 30, 331, 447, 896
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 5 cut(s) 235, 283, 368, 564, 1056
TspGWI ACGGA 1 cut(s) 890
TspRI CASTG 4 cut(s) 30, 331, 447, 896
Tth111I GACNNNGTC 2 cut(s) 275, 287
Van91I CCANNNNNTGG 1 cut(s) 25
XapI RAATTY 2 cut(s) 1084, 1111
XmaJI CCTAGG 1 cut(s) 113
XspI CTAG 2 cut(s) 114, 504
ZrmI AGTACT 1 cut(s) 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.