Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

19348132 .. 19348425

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g23660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTCTTCCTCCGAATCCACTCAGTGGACACCAACCACCCTGTCAGCCTCGAAGACGCCGAGTTCACCACCATCTCCGCTGCCGCGCAATCAAACTCTAGGTTCAGCGAGCGGCGAGGAATCGCGCATCTGTTCCGAAGAAGAAGAGGAAGCTCGTCGTCGTTGTCGAGCCACGGCGCCGAGTCCTCTCTCCTCTTCGTCGTCGTCGTCCTGAACTACCTGTCGTTCAACGACTTTATCCGCTTCTGCGAGTCCCGCCTCGACCATGTCGCCGAACTCGTTTTCATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

98

Amino Acids

11.06

Weight (kDa)

8.08

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	86, 125
AciI	CCGC	5 cut(s)	78, 84, 112, 241, 256
AcyI	GRCGYC	2 cut(s)	57, 177
AdeI	CACNNNGTG	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	229
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	80
AspLEI	GCGC	3 cut(s)	88, 127, 179
AsuHPI	GGTGA	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	3 cut(s)	81, 84, 113
BlsI	GCNGC	3 cut(s)	82, 85, 114
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	60
BsaHI	GRCGYC	2 cut(s)	57, 177
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	36
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	67
Bsh1236I	CGCG	2 cut(s)	86, 125
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	238
BspACI	CCGC	5 cut(s)	78, 84, 112, 241, 256
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	86, 125
BspLI	GGNNCC	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	176
BsrBI	CCGCTC	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	172
BssNI	GRCGYC	2 cut(s)	57, 177
Bst6I	CTCTTC	2 cut(s)	139, 200
BstACI	GRCGYC	2 cut(s)	57, 177
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	172
BstFNI	CGCG	2 cut(s)	86, 125
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	3 cut(s)	88, 127, 179
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstUI	CGCG	2 cut(s)	86, 125
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	60
BtgI	CCRYGG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	110
CfoI	GCGC	3 cut(s)	88, 127, 179
CseI	GACGC	1 cut(s)	65
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	3 cut(s)	48, 153, 171
CviKI_1	RGCY	3 cut(s)	48, 153, 171
DdeI	CTNAG	1 cut(s)	22
DinI	GGCGCC	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	139, 200
EarI	CTCTTC	2 cut(s)	139, 200
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	1 cut(s)	269
FaiI	YATR	1 cut(s)	267
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	1 cut(s)	265
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	3 cut(s)	81, 84, 113
Fsp4HI	GCNGC	3 cut(s)	81, 84, 113
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	3 cut(s)	87, 126, 178
GluI	GCNGC	3 cut(s)	81, 84, 113
HaeII	RGCGCY	1 cut(s)	180
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	3 cut(s)	88, 127, 179
Hin1I	GRCGYC	2 cut(s)	57, 177
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	3 cut(s)	86, 125, 177
HinP1I	GCGC	3 cut(s)	86, 125, 177
HinfI	GANTC	4 cut(s)	15, 120, 182, 251
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	28, 66
Hpy188I	TCNGA	2 cut(s)	14, 137
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	2 cut(s)	28, 66
Hpy99I	CGWCG	5 cut(s)	160, 163, 203, 206, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	22
Hsp92I	GRCGYC	2 cut(s)	57, 177
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	3 cut(s)	86, 125, 177
KasI	GGCGCC	1 cut(s)	176
LpnPI	CCDG	4 cut(s)	54, 224, 233, 274
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	99
MbiI	CCGCTC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	65, 150, 153, 156, 187
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	191, 260
MnlI	CCTC	7 cut(s)	20, 59, 110, 140, 196, 203, 269
MspA1I	CMGCKG	1 cut(s)	80
MvnI	CGCG	2 cut(s)	86, 125
MwoI	GCNNNNNNNGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	177
NlaIII	CATG	1 cut(s)	269
NlaIV	GGNNCC	1 cut(s)	178
NmeAIII	GCCGAG	2 cut(s)	85, 205
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 164, 204, 276
PfeI	GAWTC	2 cut(s)	15, 120
PflFI	GACNNNGTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	82, 85, 114
PleI	GAGTC	2 cut(s)	190, 259
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	2 cut(s)	190, 259
PspN4I	GGNNCC	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	266
SatI	GCNGC	3 cut(s)	81, 84, 113
SchI	GAGTC	2 cut(s)	191, 260
SetI	ASST	4 cut(s)	104, 155, 222, 293
SfaNI	GCATC	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	178
SsiI	CCGC	5 cut(s)	78, 84, 112, 241, 256
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	99
TaqI	TCGA	3 cut(s)	51, 167, 261
TauI	GCSGC	2 cut(s)	86, 115
TfiI	GAWTC	2 cut(s)	15, 120
TscAI	CASTG	1 cut(s)	30
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	1 cut(s)	274
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	25
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.