Prupe.7G247000_v2.0.a1

Brca1-associated

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
20991517 .. 20995358
3842 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G247000.1

Sequence Viewer

Length: 1476 bp
ATGTTCTTCCTCCGAGTCCACTCAGTGGACACCAACCACCCTCTCAGCCTCGAAGACGCCGAGTTCACCACCATCACAACTTCCAAGATCACCAGTGAAACGGAATCAAACCCTAACATCATCCCCAAATTCAGCGAGCGAAGAGGCATAGCTCACCTGTTCCGAAGCATAGGACACTCGTCGCTGCCGAACAGCCCTACCTCTCGATCCACTCGCCTCTTCGTCATTGCTGTTCCCAACTACCTCTCCTTCGACGACTTCATCCGCTTCTGTGGGTCCCGAATCGGCCATGTCCTCCAACTCGTCTTCATCAGGAACGATGGGATGGAAGATCGGTACAGTGTTTTAGTTGAGCTGAAGAATCAGATGACCGCCGACGGATTTTATCACACTTTAAATGGGAAGAAGTATTCGCCTGGAGAGGCCGAGTTGTGCCACATTCTGTTTCTGCTTTCTGTGGACTACACAGATTCAGATGAAATAGCTGTGACTCCTCCAGAAGGATGTATTGAATTACCTACTTGCCCAGTTTGCCTGGAGAGATTGGATGCAGACACTAGTGGAATAGCGAGTACACTTTGTGACCATTCATTTCAATGTCCATGCATTTCAAAATGGACTTATTTATCTTGTCAGGTTTGCCGATTTTGTCAGCAGCAGGATGAAAAGCCAGCTTGCTCTGTTTGTGGAATATCTGTGAATCCCTGGGTTTGCTTAATATGTGGTTTTGTAGGATGTGGAAGATATACAGAAGGCCATGCTGTTAAGCACTGGAAGGATACACAGCATTGCTATTCTCTTGAGTTGAACAGGCAGCAGATTTGGGATTACGTTGGTGATGCTTATGTTCACCGCCTGAACCAATCAAAAATTGATGGCAAGCTAATAACTGATTTGGATTCTCAATGTATGTCAGTGGAAGGGGATTGTGACAGGTGTGAATGCAGTGATGATTCTGGAATTAGTGGAGCCCTCTATAGCAGCAAAGTTGAAACAATTGTAGACGAGTATAACCGACTTCTTGCAAGTCAGCTTGAAACTCAAAGACAATATTATGAAACTCTACTTATGGAGGCCAAAACTAAAAAGGAAAGTTCAATGTTAGAAGCAGTGGAGAAAGCTGTAAATTCCAAGATGCAGGATTTTCAAGCGAAACTGGAGAAATGTCTTGAGGAAAGAAATGTTGTTGAAGATATCAACCGTAATCTCATCAAGGGCCAAGAAACCCGGCGTGGAAAGTTGAAGGAAATTGAAGAGAGGGAAGCTGCATCACTGAGGTTAAGAGAGGAGAGGATACTTGATCTGGAAGAACAGATTAGAGATCTTACAGTCTATATTGAAGCCCAAAAAACACTTAAGGACATGACGGATTCAGATTGCATCAAAGGGGGAACGCTGTTGCCTGTACCTTCTTCAAAGCAATCTTCTCCTGCCAACTCTAGACGACAAACAAAATTTGGTCGAAGACGGAACTAA

Protein Analysis

492

Amino Acids

55.74

Weight (kDa)

5.52

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 1002
AciI CCGC 3 cut(s) 265, 372, 853
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 3 cut(s) 128, 1126, 1454
AcuI CTGAAG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 57
AdeI CACNNNGTG 2 cut(s) 25, 581
AfaI GTAC 3 cut(s) 338, 574, 1407
AfiI CCNNNNNNNGG 2 cut(s) 25, 500
AflII CTTAAG 1 cut(s) 1355
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 3 cut(s) 415, 534, 704
AluBI AGCT 8 cut(s) 152, 355, 485, 674, 883, 1033, 1121, 1265
AluI AGCT 8 cut(s) 152, 355, 485, 674, 883, 1033, 1121, 1265
AlwI GGATC 1 cut(s) 201
AoxI GGCC 5 cut(s) 286, 423, 754, 1074, 1216
ApeKI GCWGC 5 cut(s) 184, 655, 814, 981, 1265
ApoI RAATTY 3 cut(s) 128, 1126, 1454
AspS9I GGNCC 2 cut(s) 276, 1216
AsuC2I CCSGG 1 cut(s) 1228
AsuHPI GGTGA 5 cut(s) 58, 82, 146, 842, 848
AvaII GGWCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 973
BbsI GAAGAC 3 cut(s) 60, 298, 1471
BbvI GCAGC 5 cut(s) 171, 667, 826, 993, 1252
BccI CCATC 4 cut(s) 80, 314, 319, 869
BciT130I CCWGG 3 cut(s) 417, 536, 706
BciVI GTATCC 2 cut(s) 772, 1287
BcnI CCSGG 1 cut(s) 1228
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 2 cut(s) 558, 1440
BfmI CTRYAG 1 cut(s) 976
BfrI CTTAAG 1 cut(s) 1355
BfuI GTATCC 2 cut(s) 772, 1287
BglII AGATCT 1 cut(s) 1321
BisI GCNGC 5 cut(s) 185, 656, 815, 982, 1266
BlsI GCNGC 5 cut(s) 186, 657, 816, 983, 1267
Bme1390I CCNGG 4 cut(s) 417, 536, 706, 1228
Bme18I GGWCC 1 cut(s) 276
BmgT120I GGNCC 2 cut(s) 276, 1216
BmiI GGNNCC 3 cut(s) 277, 278, 970
BmrFI CCNGG 4 cut(s) 417, 536, 706, 1228
BmrI ACTGGG 1 cut(s) 521
BmsI GCATC 5 cut(s) 538, 829, 1125, 1277, 1389
BmuI ACTGGG 1 cut(s) 521
BoxI GACNNNNGTC 1 cut(s) 178
BpiI GAAGAC 3 cut(s) 60, 298, 1471
BpmI CTGGAG 4 cut(s) 438, 480, 557, 1178
BpuEI CTTGAG 2 cut(s) 821, 1190
BpuMI CCSGG 1 cut(s) 1228
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 704, 705
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 500
Bse1I ACTGG 4 cut(s) 93, 527, 776, 1161
Bse3DI GCAATG 2 cut(s) 225, 787
BseBI CCWGG 3 cut(s) 417, 536, 706
BseDI CCNNGG 2 cut(s) 704, 705
BseGI GGATG 7 cut(s) 120, 261, 330, 509, 553, 667, 740
BseLI CCNNNNNNNGG 2 cut(s) 25, 500
BseMI GCAATG 2 cut(s) 225, 787
BseMII CTCAG 3 cut(s) 36, 58, 1265
BseNI ACTGG 4 cut(s) 93, 527, 776, 1161
BseRI GAGGAG 2 cut(s) 483, 1301
BseXI GCAGC 5 cut(s) 171, 667, 826, 993, 1252
BshFI GGCC 5 cut(s) 288, 425, 756, 1076, 1218
BsiSI CCGG 1 cut(s) 1228
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 25, 500
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 1 cut(s) 947
BsnI GGCC 5 cut(s) 288, 425, 756, 1076, 1218
Bsp1286I GDGCHC 1 cut(s) 973
Bsp143I GATC 5 cut(s) 87, 206, 331, 1300, 1321
BspACI CCGC 3 cut(s) 265, 372, 853
BspANI GGCC 5 cut(s) 288, 425, 756, 1076, 1218
BspCNI CTCAG 3 cut(s) 35, 57, 1266
BspLI GGNNCC 3 cut(s) 277, 278, 970
BspPI GGATC 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 1355
BsrDI GCAATG 2 cut(s) 225, 787
BsrI ACTGG 4 cut(s) 93, 527, 776, 1161
BssECI CCNNGG 2 cut(s) 704, 705
BssMI GATC 5 cut(s) 87, 206, 331, 1300, 1321
BssNI GRCGYC 1 cut(s) 57
Bst2UI CCWGG 3 cut(s) 417, 536, 706
Bst4CI ACNGT 3 cut(s) 341, 1202, 1330
Bst6I CTCTTC 3 cut(s) 136, 224, 1248
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 1355
BstC8I GCNNGC 4 cut(s) 137, 672, 676, 881
BstDEI CTNAG 3 cut(s) 22, 44, 1274
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 7 cut(s) 120, 261, 330, 509, 553, 667, 740
BstKTI GATC 5 cut(s) 90, 209, 334, 1303, 1324
BstMBI GATC 5 cut(s) 87, 206, 331, 1300, 1321
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNI CCWGG 3 cut(s) 417, 536, 706
BstPAI GACNNNNGTC 1 cut(s) 178
BstSCI CCNGG 4 cut(s) 415, 534, 704, 1226
BstSFI CTRYAG 1 cut(s) 976
BstV1I GCAGC 5 cut(s) 171, 667, 826, 993, 1252
BstV2I GAAGAC 3 cut(s) 60, 298, 1471
BstX2I RGATCY 1 cut(s) 1321
BstYI RGATCY 1 cut(s) 1321
BsuI GTATCC 2 cut(s) 772, 1287
BsuRI GGCC 5 cut(s) 288, 425, 756, 1076, 1218
BtsCI GGATG 7 cut(s) 120, 261, 330, 509, 553, 667, 740
BtsI GCAGTG 2 cut(s) 952, 1116
BtsIMutI CAGTG 8 cut(s) 30, 100, 346, 769, 921, 952, 1116, 1271
Cac8I GCNNGC 4 cut(s) 137, 672, 676, 881
Cfr13I GGNCC 2 cut(s) 276, 1216
CseI GACGC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 337, 573, 1406
CviAII CATG 4 cut(s) 290, 603, 758, 1363
CviQI GTAC 3 cut(s) 337, 573, 1406
DdeI CTNAG 3 cut(s) 22, 44, 1274
DpnI GATC 5 cut(s) 89, 208, 333, 1302, 1323
DpnII GATC 5 cut(s) 87, 206, 331, 1300, 1321
DraI TTTAAA 1 cut(s) 396
DraIII CACNNNGTG 2 cut(s) 25, 581
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 3 cut(s) 136, 224, 1248
EarI CTCTTC 3 cut(s) 136, 224, 1248
Eco24I GRGCYC 1 cut(s) 973
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 276
EcoRII CCWGG 3 cut(s) 415, 534, 704
EcoRV GATATC 1 cut(s) 1195
EcoT22I ATGCAT 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 973
FaeI CATG 4 cut(s) 293, 606, 761, 1366
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 289, 602, 757, 1362
FblI GTMKAC 1 cut(s) 1002
Fnu4HI GCNGC 5 cut(s) 185, 656, 815, 982, 1266
FokI GGATG 7 cut(s) 107, 248, 337, 516, 560, 674, 747
FriOI GRGCYC 1 cut(s) 973
Fsp4HI GCNGC 5 cut(s) 185, 656, 815, 982, 1266
FspBI CTAG 2 cut(s) 558, 1440
GluI GCNGC 5 cut(s) 185, 656, 815, 982, 1266
GsuI CTGGAG 4 cut(s) 438, 480, 557, 1178
HaeIII GGCC 5 cut(s) 288, 425, 756, 1076, 1218
HapII CCGG 1 cut(s) 1228
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 293, 606, 761, 1366
HpaII CCGG 1 cut(s) 1228
HphI GGTGA 5 cut(s) 58, 82, 146, 842, 848
Hpy166II GTNNAC 7 cut(s) 19, 28, 66, 460, 575, 850, 1003
Hpy188I TCNGA 5 cut(s) 14, 164, 366, 475, 1375
Hpy188III TCNNGA 9 cut(s) 204, 279, 313, 497, 800, 957, 1169, 1304, 1440
Hpy8I GTNNAC 7 cut(s) 19, 28, 66, 460, 575, 850, 1003
Hpy99I CGWCG 3 cut(s) 184, 257, 380
HpyAV CCTTC 7 cut(s) 259, 494, 746, 769, 914, 1237, 1419
HpyCH4III ACNGT 3 cut(s) 341, 1202, 1330
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 7 cut(s) 551, 606, 945, 1025, 1138, 1268, 1380
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 3 cut(s) 22, 44, 1274
HpySE526I ACGT 1 cut(s) 831
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 293, 606, 761, 1366
KflI GGGWCCC 1 cut(s) 276
Kzo9I GATC 5 cut(s) 87, 206, 331, 1300, 1321
LmnI GCTCC 1 cut(s) 968
Lsp1109I GCAGC 5 cut(s) 171, 667, 826, 993, 1252
LweI GCATC 5 cut(s) 538, 829, 1125, 1277, 1389
MaeI CTAG 2 cut(s) 558, 1440
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 3 cut(s) 487, 581, 929
MalI GATC 5 cut(s) 89, 208, 333, 1302, 1323
MboI GATC 5 cut(s) 87, 206, 331, 1300, 1321
MfeI CAATTG 1 cut(s) 996
MflI RGATCY 1 cut(s) 1321
MhlI GDGCHC 1 cut(s) 973
MluCI AATT 8 cut(s) 128, 512, 870, 960, 996, 1126, 1248, 1454
MlyI GAGTC 2 cut(s) 24, 484
MmeI TCCRAC 1 cut(s) 322
Mph1103I ATGCAT 1 cut(s) 608
MseI TTAA 5 cut(s) 395, 716, 765, 1280, 1356
MslI CAYNNNNRTG 1 cut(s) 595
MspCI CTTAAG 1 cut(s) 1355
MspI CCGG 1 cut(s) 1228
MspR9I CCNGG 4 cut(s) 417, 536, 706, 1228
MunI CAATTG 1 cut(s) 996
Mva1269I GAATGC 1 cut(s) 947
MvaI CCWGG 3 cut(s) 417, 536, 706
MwoI GCNNNNNNNGC 1 cut(s) 531
NciI CCSGG 1 cut(s) 1228
NdeII GATC 5 cut(s) 87, 206, 331, 1300, 1321
NlaIII CATG 4 cut(s) 293, 606, 761, 1366
NlaIV GGNNCC 3 cut(s) 277, 278, 970
NmeAIII GCCGAG 2 cut(s) 85, 451
NmuCI GTSAC 3 cut(s) 487, 581, 929
NsiI ATGCAT 1 cut(s) 608
PasI CCCWGGG 1 cut(s) 705
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 185
PctI GAATGC 1 cut(s) 947
PfeI GAWTC 8 cut(s) 104, 282, 361, 470, 700, 899, 953, 1370
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 5 cut(s) 186, 657, 816, 983, 1267
PleI GAGTC 2 cut(s) 23, 484
PpsI GAGTC 2 cut(s) 23, 484
PpuMI RGGWCCY 1 cut(s) 276
PshAI GACNNNNGTC 1 cut(s) 178
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 415, 534, 704
PspGI CCWGG 3 cut(s) 415, 534, 704
PspN4I GGNNCC 3 cut(s) 277, 278, 970
PspPI GGNCC 2 cut(s) 276, 1216
PspPPI RGGWCCY 1 cut(s) 276
PsuI RGATCY 1 cut(s) 1321
RsaI GTAC 3 cut(s) 338, 574, 1407
RsaNI GTAC 3 cut(s) 337, 573, 1406
RseI CAYNNNNRTG 1 cut(s) 595
SaqAI TTAA 5 cut(s) 395, 716, 765, 1280, 1356
SatI GCNGC 5 cut(s) 185, 656, 815, 982, 1266
Sau3AI GATC 5 cut(s) 87, 206, 331, 1300, 1321
Sau96I GGNCC 2 cut(s) 276, 1216
SchI GAGTC 2 cut(s) 24, 484
ScrFI CCNGG 4 cut(s) 417, 536, 706, 1228
SduI GDGCHC 1 cut(s) 973
SfaNI GCATC 5 cut(s) 538, 829, 1125, 1277, 1389
SfcI CTRYAG 1 cut(s) 976
SinI GGWCC 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 595
SmlI CTYRAG 3 cut(s) 800, 1169, 1355
SmoI CTYRAG 3 cut(s) 800, 1169, 1355
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 8 cut(s) 128, 512, 870, 960, 996, 1126, 1248, 1454
SsiI CCGC 3 cut(s) 265, 372, 853
SspI AATATT 1 cut(s) 1052
SspMI CTAG 2 cut(s) 558, 1440
StyD4I CCNGG 4 cut(s) 415, 534, 704, 1226
TaaI ACNGT 3 cut(s) 341, 1202, 1330
TaiI ACGT 1 cut(s) 834
TaqI TCGA 4 cut(s) 51, 205, 252, 1462
TasI AATT 8 cut(s) 128, 512, 870, 960, 996, 1126, 1248, 1454
TatI WGTACW 1 cut(s) 572
TfiI GAWTC 8 cut(s) 104, 282, 361, 470, 700, 899, 953, 1370
Tru1I TTAA 5 cut(s) 395, 716, 765, 1280, 1356
Tru9I TTAA 5 cut(s) 395, 716, 765, 1280, 1356
TscAI CASTG 8 cut(s) 30, 100, 346, 776, 921, 952, 1116, 1278
TseFI GTSAC 3 cut(s) 487, 581, 929
TseI GCWGC 5 cut(s) 184, 655, 814, 981, 1265
Tsp45I GTSAC 3 cut(s) 487, 581, 929
TspDTI ATGAA 6 cut(s) 250, 298, 492, 579, 678, 1071
TspGWI ACGGA 3 cut(s) 116, 393, 1382
TspRI CASTG 8 cut(s) 30, 100, 346, 776, 921, 952, 1116, 1278
Van91I CCANNNNNTGG 1 cut(s) 25
Vha464I CTTAAG 1 cut(s) 1355
VpaK11BI GGWCC 1 cut(s) 276
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 3 cut(s) 128, 1126, 1454
XbaI TCTAGA 1 cut(s) 1439
XmiI GTMKAC 1 cut(s) 1002
XspI CTAG 2 cut(s) 558, 1440
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.