Brca1-associated
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42160 AT2G42160 AT2G42160 |
| fragaria_vesca | FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430 |
| malus_domestica | MD02G1027800.v1.1 MD15G1169400.v1.1 |
| prunus_persica | Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 |
| pyrus_communis | pycom02g02280 pycom07g20490 pycom15g15110 |
| rosa_chinensis | RchiOBHm_Chr2g0087861 |
| rosa_multiflora | Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00153160 |
| rosa_rugosa | Rorug01G0479000 Rorug01G0479100 Rorug03G0142200 |
| rosa_samantha | Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100 |
| rosa_wichuraiana | Rw2G002640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 25 |
| AccI | GTMKAC | 1 cut(s) | 1002 |
| AciI | CCGC | 3 cut(s) | 265, 372, 853 |
| AclWI | GGATC | 1 cut(s) | 201 |
| AcoI | YGGCCR | 1 cut(s) | 286 |
| AcsI | RAATTY | 3 cut(s) | 128, 1126, 1454 |
| AcuI | CTGAAG | 1 cut(s) | 377 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AdeI | CACNNNGTG | 2 cut(s) | 25, 581 |
| AfaI | GTAC | 3 cut(s) | 338, 574, 1407 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 500 |
| AflII | CTTAAG | 1 cut(s) | 1355 |
| AhlI | ACTAGT | 1 cut(s) | 557 |
| AjnI | CCWGG | 3 cut(s) | 415, 534, 704 |
| AluBI | AGCT | 8 cut(s) | 152, 355, 485, 674, 883, 1033, 1121, 1265 |
| AluI | AGCT | 8 cut(s) | 152, 355, 485, 674, 883, 1033, 1121, 1265 |
| AlwI | GGATC | 1 cut(s) | 201 |
| AoxI | GGCC | 5 cut(s) | 286, 423, 754, 1074, 1216 |
| ApeKI | GCWGC | 5 cut(s) | 184, 655, 814, 981, 1265 |
| ApoI | RAATTY | 3 cut(s) | 128, 1126, 1454 |
| AspS9I | GGNCC | 2 cut(s) | 276, 1216 |
| AsuC2I | CCSGG | 1 cut(s) | 1228 |
| AsuHPI | GGTGA | 5 cut(s) | 58, 82, 146, 842, 848 |
| AvaII | GGWCC | 1 cut(s) | 276 |
| BanII | GRGCYC | 1 cut(s) | 973 |
| BbsI | GAAGAC | 3 cut(s) | 60, 298, 1471 |
| BbvI | GCAGC | 5 cut(s) | 171, 667, 826, 993, 1252 |
| BccI | CCATC | 4 cut(s) | 80, 314, 319, 869 |
| BciT130I | CCWGG | 3 cut(s) | 417, 536, 706 |
| BciVI | GTATCC | 2 cut(s) | 772, 1287 |
| BcnI | CCSGG | 1 cut(s) | 1228 |
| BcuI | ACTAGT | 1 cut(s) | 557 |
| BfaI | CTAG | 2 cut(s) | 558, 1440 |
| BfmI | CTRYAG | 1 cut(s) | 976 |
| BfrI | CTTAAG | 1 cut(s) | 1355 |
| BfuI | GTATCC | 2 cut(s) | 772, 1287 |
| BglII | AGATCT | 1 cut(s) | 1321 |
| BisI | GCNGC | 5 cut(s) | 185, 656, 815, 982, 1266 |
| BlsI | GCNGC | 5 cut(s) | 186, 657, 816, 983, 1267 |
| Bme1390I | CCNGG | 4 cut(s) | 417, 536, 706, 1228 |
| Bme18I | GGWCC | 1 cut(s) | 276 |
| BmgT120I | GGNCC | 2 cut(s) | 276, 1216 |
| BmiI | GGNNCC | 3 cut(s) | 277, 278, 970 |
| BmrFI | CCNGG | 4 cut(s) | 417, 536, 706, 1228 |
| BmrI | ACTGGG | 1 cut(s) | 521 |
| BmsI | GCATC | 5 cut(s) | 538, 829, 1125, 1277, 1389 |
| BmuI | ACTGGG | 1 cut(s) | 521 |
| BoxI | GACNNNNGTC | 1 cut(s) | 178 |
| BpiI | GAAGAC | 3 cut(s) | 60, 298, 1471 |
| BpmI | CTGGAG | 4 cut(s) | 438, 480, 557, 1178 |
| BpuEI | CTTGAG | 2 cut(s) | 821, 1190 |
| BpuMI | CCSGG | 1 cut(s) | 1228 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 2 cut(s) | 704, 705 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 500 |
| Bse1I | ACTGG | 4 cut(s) | 93, 527, 776, 1161 |
| Bse3DI | GCAATG | 2 cut(s) | 225, 787 |
| BseBI | CCWGG | 3 cut(s) | 417, 536, 706 |
| BseDI | CCNNGG | 2 cut(s) | 704, 705 |
| BseGI | GGATG | 7 cut(s) | 120, 261, 330, 509, 553, 667, 740 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 500 |
| BseMI | GCAATG | 2 cut(s) | 225, 787 |
| BseMII | CTCAG | 3 cut(s) | 36, 58, 1265 |
| BseNI | ACTGG | 4 cut(s) | 93, 527, 776, 1161 |
| BseRI | GAGGAG | 2 cut(s) | 483, 1301 |
| BseXI | GCAGC | 5 cut(s) | 171, 667, 826, 993, 1252 |
| BshFI | GGCC | 5 cut(s) | 288, 425, 756, 1076, 1218 |
| BsiSI | CCGG | 1 cut(s) | 1228 |
| BslFI | GGGAC | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 500 |
| BsmFI | GGGAC | 1 cut(s) | 262 |
| BsmI | GAATGC | 1 cut(s) | 947 |
| BsnI | GGCC | 5 cut(s) | 288, 425, 756, 1076, 1218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 973 |
| Bsp143I | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| BspACI | CCGC | 3 cut(s) | 265, 372, 853 |
| BspANI | GGCC | 5 cut(s) | 288, 425, 756, 1076, 1218 |
| BspCNI | CTCAG | 3 cut(s) | 35, 57, 1266 |
| BspLI | GGNNCC | 3 cut(s) | 277, 278, 970 |
| BspPI | GGATC | 1 cut(s) | 201 |
| BspTI | CTTAAG | 1 cut(s) | 1355 |
| BsrDI | GCAATG | 2 cut(s) | 225, 787 |
| BsrI | ACTGG | 4 cut(s) | 93, 527, 776, 1161 |
| BssECI | CCNNGG | 2 cut(s) | 704, 705 |
| BssMI | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 3 cut(s) | 417, 536, 706 |
| Bst4CI | ACNGT | 3 cut(s) | 341, 1202, 1330 |
| Bst6I | CTCTTC | 3 cut(s) | 136, 224, 1248 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstAFI | CTTAAG | 1 cut(s) | 1355 |
| BstC8I | GCNNGC | 4 cut(s) | 137, 672, 676, 881 |
| BstDEI | CTNAG | 3 cut(s) | 22, 44, 1274 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 498 |
| BstF5I | GGATG | 7 cut(s) | 120, 261, 330, 509, 553, 667, 740 |
| BstKTI | GATC | 5 cut(s) | 90, 209, 334, 1303, 1324 |
| BstMBI | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 531 |
| BstNI | CCWGG | 3 cut(s) | 417, 536, 706 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 178 |
| BstSCI | CCNGG | 4 cut(s) | 415, 534, 704, 1226 |
| BstSFI | CTRYAG | 1 cut(s) | 976 |
| BstV1I | GCAGC | 5 cut(s) | 171, 667, 826, 993, 1252 |
| BstV2I | GAAGAC | 3 cut(s) | 60, 298, 1471 |
| BstX2I | RGATCY | 1 cut(s) | 1321 |
| BstYI | RGATCY | 1 cut(s) | 1321 |
| BsuI | GTATCC | 2 cut(s) | 772, 1287 |
| BsuRI | GGCC | 5 cut(s) | 288, 425, 756, 1076, 1218 |
| BtsCI | GGATG | 7 cut(s) | 120, 261, 330, 509, 553, 667, 740 |
| BtsI | GCAGTG | 2 cut(s) | 952, 1116 |
| BtsIMutI | CAGTG | 8 cut(s) | 30, 100, 346, 769, 921, 952, 1116, 1271 |
| Cac8I | GCNNGC | 4 cut(s) | 137, 672, 676, 881 |
| Cfr13I | GGNCC | 2 cut(s) | 276, 1216 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 3 cut(s) | 337, 573, 1406 |
| CviAII | CATG | 4 cut(s) | 290, 603, 758, 1363 |
| CviQI | GTAC | 3 cut(s) | 337, 573, 1406 |
| DdeI | CTNAG | 3 cut(s) | 22, 44, 1274 |
| DpnI | GATC | 5 cut(s) | 89, 208, 333, 1302, 1323 |
| DpnII | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| DraI | TTTAAA | 1 cut(s) | 396 |
| DraIII | CACNNNGTG | 2 cut(s) | 25, 581 |
| EaeI | YGGCCR | 1 cut(s) | 286 |
| Eam1104I | CTCTTC | 3 cut(s) | 136, 224, 1248 |
| EarI | CTCTTC | 3 cut(s) | 136, 224, 1248 |
| Eco24I | GRGCYC | 1 cut(s) | 973 |
| Eco32I | GATATC | 1 cut(s) | 1195 |
| Eco47I | GGWCC | 1 cut(s) | 276 |
| Eco57I | CTGAAG | 1 cut(s) | 377 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 498 |
| EcoO109I | RGGNCCY | 1 cut(s) | 276 |
| EcoRII | CCWGG | 3 cut(s) | 415, 534, 704 |
| EcoRV | GATATC | 1 cut(s) | 1195 |
| EcoT22I | ATGCAT | 1 cut(s) | 608 |
| EcoT38I | GRGCYC | 1 cut(s) | 973 |
| FaeI | CATG | 4 cut(s) | 293, 606, 761, 1366 |
| FaqI | GGGAC | 1 cut(s) | 262 |
| FatI | CATG | 4 cut(s) | 289, 602, 757, 1362 |
| FblI | GTMKAC | 1 cut(s) | 1002 |
| Fnu4HI | GCNGC | 5 cut(s) | 185, 656, 815, 982, 1266 |
| FokI | GGATG | 7 cut(s) | 107, 248, 337, 516, 560, 674, 747 |
| FriOI | GRGCYC | 1 cut(s) | 973 |
| Fsp4HI | GCNGC | 5 cut(s) | 185, 656, 815, 982, 1266 |
| FspBI | CTAG | 2 cut(s) | 558, 1440 |
| GluI | GCNGC | 5 cut(s) | 185, 656, 815, 982, 1266 |
| GsuI | CTGGAG | 4 cut(s) | 438, 480, 557, 1178 |
| HaeIII | GGCC | 5 cut(s) | 288, 425, 756, 1076, 1218 |
| HapII | CCGG | 1 cut(s) | 1228 |
| HgaI | GACGC | 1 cut(s) | 65 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 4 cut(s) | 293, 606, 761, 1366 |
| HpaII | CCGG | 1 cut(s) | 1228 |
| HphI | GGTGA | 5 cut(s) | 58, 82, 146, 842, 848 |
| Hpy166II | GTNNAC | 7 cut(s) | 19, 28, 66, 460, 575, 850, 1003 |
| Hpy188I | TCNGA | 5 cut(s) | 14, 164, 366, 475, 1375 |
| Hpy188III | TCNNGA | 9 cut(s) | 204, 279, 313, 497, 800, 957, 1169, 1304, 1440 |
| Hpy8I | GTNNAC | 7 cut(s) | 19, 28, 66, 460, 575, 850, 1003 |
| Hpy99I | CGWCG | 3 cut(s) | 184, 257, 380 |
| HpyAV | CCTTC | 7 cut(s) | 259, 494, 746, 769, 914, 1237, 1419 |
| HpyCH4III | ACNGT | 3 cut(s) | 341, 1202, 1330 |
| HpyCH4IV | ACGT | 1 cut(s) | 831 |
| HpyCH4V | TGCA | 7 cut(s) | 551, 606, 945, 1025, 1138, 1268, 1380 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 531 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 44, 1274 |
| HpySE526I | ACGT | 1 cut(s) | 831 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 4 cut(s) | 293, 606, 761, 1366 |
| KflI | GGGWCCC | 1 cut(s) | 276 |
| Kzo9I | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| LmnI | GCTCC | 1 cut(s) | 968 |
| Lsp1109I | GCAGC | 5 cut(s) | 171, 667, 826, 993, 1252 |
| LweI | GCATC | 5 cut(s) | 538, 829, 1125, 1277, 1389 |
| MaeI | CTAG | 2 cut(s) | 558, 1440 |
| MaeII | ACGT | 1 cut(s) | 831 |
| MaeIII | GTNAC | 3 cut(s) | 487, 581, 929 |
| MalI | GATC | 5 cut(s) | 89, 208, 333, 1302, 1323 |
| MboI | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| MfeI | CAATTG | 1 cut(s) | 996 |
| MflI | RGATCY | 1 cut(s) | 1321 |
| MhlI | GDGCHC | 1 cut(s) | 973 |
| MluCI | AATT | 8 cut(s) | 128, 512, 870, 960, 996, 1126, 1248, 1454 |
| MlyI | GAGTC | 2 cut(s) | 24, 484 |
| MmeI | TCCRAC | 1 cut(s) | 322 |
| Mph1103I | ATGCAT | 1 cut(s) | 608 |
| MseI | TTAA | 5 cut(s) | 395, 716, 765, 1280, 1356 |
| MslI | CAYNNNNRTG | 1 cut(s) | 595 |
| MspCI | CTTAAG | 1 cut(s) | 1355 |
| MspI | CCGG | 1 cut(s) | 1228 |
| MspR9I | CCNGG | 4 cut(s) | 417, 536, 706, 1228 |
| MunI | CAATTG | 1 cut(s) | 996 |
| Mva1269I | GAATGC | 1 cut(s) | 947 |
| MvaI | CCWGG | 3 cut(s) | 417, 536, 706 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 531 |
| NciI | CCSGG | 1 cut(s) | 1228 |
| NdeII | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| NlaIII | CATG | 4 cut(s) | 293, 606, 761, 1366 |
| NlaIV | GGNNCC | 3 cut(s) | 277, 278, 970 |
| NmeAIII | GCCGAG | 2 cut(s) | 85, 451 |
| NmuCI | GTSAC | 3 cut(s) | 487, 581, 929 |
| NsiI | ATGCAT | 1 cut(s) | 608 |
| PasI | CCCWGGG | 1 cut(s) | 705 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 57, 185 |
| PctI | GAATGC | 1 cut(s) | 947 |
| PfeI | GAWTC | 8 cut(s) | 104, 282, 361, 470, 700, 899, 953, 1370 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 25 |
| PkrI | GCNGC | 5 cut(s) | 186, 657, 816, 983, 1267 |
| PleI | GAGTC | 2 cut(s) | 23, 484 |
| PpsI | GAGTC | 2 cut(s) | 23, 484 |
| PpuMI | RGGWCCY | 1 cut(s) | 276 |
| PshAI | GACNNNNGTC | 1 cut(s) | 178 |
| Psp5II | RGGWCCY | 1 cut(s) | 276 |
| Psp6I | CCWGG | 3 cut(s) | 415, 534, 704 |
| PspGI | CCWGG | 3 cut(s) | 415, 534, 704 |
| PspN4I | GGNNCC | 3 cut(s) | 277, 278, 970 |
| PspPI | GGNCC | 2 cut(s) | 276, 1216 |
| PspPPI | RGGWCCY | 1 cut(s) | 276 |
| PsuI | RGATCY | 1 cut(s) | 1321 |
| RsaI | GTAC | 3 cut(s) | 338, 574, 1407 |
| RsaNI | GTAC | 3 cut(s) | 337, 573, 1406 |
| RseI | CAYNNNNRTG | 1 cut(s) | 595 |
| SaqAI | TTAA | 5 cut(s) | 395, 716, 765, 1280, 1356 |
| SatI | GCNGC | 5 cut(s) | 185, 656, 815, 982, 1266 |
| Sau3AI | GATC | 5 cut(s) | 87, 206, 331, 1300, 1321 |
| Sau96I | GGNCC | 2 cut(s) | 276, 1216 |
| SchI | GAGTC | 2 cut(s) | 24, 484 |
| ScrFI | CCNGG | 4 cut(s) | 417, 536, 706, 1228 |
| SduI | GDGCHC | 1 cut(s) | 973 |
| SfaNI | GCATC | 5 cut(s) | 538, 829, 1125, 1277, 1389 |
| SfcI | CTRYAG | 1 cut(s) | 976 |
| SinI | GGWCC | 1 cut(s) | 276 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 595 |
| SmlI | CTYRAG | 3 cut(s) | 800, 1169, 1355 |
| SmoI | CTYRAG | 3 cut(s) | 800, 1169, 1355 |
| SpeI | ACTAGT | 1 cut(s) | 557 |
| Sse9I | AATT | 8 cut(s) | 128, 512, 870, 960, 996, 1126, 1248, 1454 |
| SsiI | CCGC | 3 cut(s) | 265, 372, 853 |
| SspI | AATATT | 1 cut(s) | 1052 |
| SspMI | CTAG | 2 cut(s) | 558, 1440 |
| StyD4I | CCNGG | 4 cut(s) | 415, 534, 704, 1226 |
| TaaI | ACNGT | 3 cut(s) | 341, 1202, 1330 |
| TaiI | ACGT | 1 cut(s) | 834 |
| TaqI | TCGA | 4 cut(s) | 51, 205, 252, 1462 |
| TasI | AATT | 8 cut(s) | 128, 512, 870, 960, 996, 1126, 1248, 1454 |
| TatI | WGTACW | 1 cut(s) | 572 |
| TfiI | GAWTC | 8 cut(s) | 104, 282, 361, 470, 700, 899, 953, 1370 |
| Tru1I | TTAA | 5 cut(s) | 395, 716, 765, 1280, 1356 |
| Tru9I | TTAA | 5 cut(s) | 395, 716, 765, 1280, 1356 |
| TscAI | CASTG | 8 cut(s) | 30, 100, 346, 776, 921, 952, 1116, 1278 |
| TseFI | GTSAC | 3 cut(s) | 487, 581, 929 |
| TseI | GCWGC | 5 cut(s) | 184, 655, 814, 981, 1265 |
| Tsp45I | GTSAC | 3 cut(s) | 487, 581, 929 |
| TspDTI | ATGAA | 6 cut(s) | 250, 298, 492, 579, 678, 1071 |
| TspGWI | ACGGA | 3 cut(s) | 116, 393, 1382 |
| TspRI | CASTG | 8 cut(s) | 30, 100, 346, 776, 921, 952, 1116, 1278 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 25 |
| Vha464I | CTTAAG | 1 cut(s) | 1355 |
| VpaK11BI | GGWCC | 1 cut(s) | 276 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 498 |
| XapI | RAATTY | 3 cut(s) | 128, 1126, 1454 |
| XbaI | TCTAGA | 1 cut(s) | 1439 |
| XmiI | GTMKAC | 1 cut(s) | 1002 |
| XspI | CTAG | 2 cut(s) | 558, 1440 |
| Zsp2I | ATGCAT | 1 cut(s) | 608 |