Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003256

Physical Location & Seq

Genomic Coordinates Reverse (-)

22558469 .. 22559213

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCCTCTCCTTCTCTACTCTTCCAAGACATTCTTTCTCTCAAATTCGACCAATCAAGCTAAATCATTTACCATCCCCACGTCAATGAAGTCAAAGCACTCGTTTGACCTAAAATTCAGATCCAGAAATCCACATTCCTTGAAAAAAAATGGGAACACTCAAATGGCTCCTCCGAGTGCTCAAACAATGGAGGTTTTGGTTTTGTCGTCAGCCCACAACCACCATGTTATCCTCCAAGTTCACTCAGTGGACACCAACCACCCTCTCAACCACCGCTGCGCTGAATCTGACCCTAAAACCACCTCCAAACCCAAATTCAGCAAGCGAAGAGGAATCGCCCACTTGTTTCAGAAAATCAGACAATCGTCGCTGCCGAGACCCACCTCTCGCTCCCCCATCCTCTTTGTCATTGCCGTTCCCAACTACCTCTCATTCGGCGGCTTAATCAAAGCTGGCCTCGGCGGCGAGCGAGACCCCTCGGCCATTATACCCAACTGTGTGTACCATCCGATATCCTCCAAGAAATGGGTCCATCCCTCCCCCACCGAGCCCATGGACCACACTTCCGTCGCCGTCCGCTCGCGAGATCTGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000165 GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008139 GO:0008150 GO:0008152 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016310 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023014 GO:0023051 GO:0023052 GO:0023057 GO:0031090 GO:0031965 GO:0031967 GO:0031975 GO:0032446 GO:0032991 GO:0033218 GO:0035556 GO:0036211 GO:0042277 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

BRAP2 zf-UBP

Protein Analysis

199

Amino Acids

22.0

Weight (kDa)

10.39

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42160 AT2G42160 AT2G42160
fragaria_vesca	FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_1g02780 FvH4_2g13831 FvH4_2g23660 FvH4_3g28060 FvH4_4g24430
malus_domestica	MD02G1027800.v1.1 MD15G1169400.v1.1
prunus_persica	Prupe.6G053200_v2.0.a1 Prupe.6G053200_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1 Prupe.7G247000_v2.0.a1
pyrus_communis	pycom02g02280 pycom07g20490 pycom15g15110
rosa_chinensis	RchiOBHm_Chr2g0087861
rosa_multiflora	Rmu_sc0008385.1_g000019 Rmu_sc0014136.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153160
rosa_rugosa	Rorug01G0479000 Rorug01G0479100 Rorug03G0142200
rosa_samantha	Rh2AG033700 Rh2BG032900 Rh2CG033600 Rh2DG033300 Rh3BG293300 Rh3CG217500 Rh4CG162100
rosa_wichuraiana	Rw2G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	579
AccII	CGCG	1 cut(s)	583
AciI	CCGC	4 cut(s)	274, 438, 462, 577
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	3 cut(s)	43, 113, 314
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	2 cut(s)	59, 452
AluI	AGCT	2 cut(s)	59, 452
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	370, 465
AlwI	GGATC	1 cut(s)	114
AoxI	GGCC	2 cut(s)	454, 480
ApeKI	GCWGC	2 cut(s)	276, 370
ApoI	RAATTY	3 cut(s)	43, 113, 314
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	529, 556
AvaII	GGWCC	2 cut(s)	529, 556
BanII	GRGCYC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	263, 357
BccI	CCATC	4 cut(s)	80, 404, 513, 540
BceAI	ACGGC	2 cut(s)	398, 557
BcoDI	GTCTC	2 cut(s)	370, 465
BglI	GCCNNNNNGGC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	4 cut(s)	277, 371, 439, 463
BlsI	GCNGC	4 cut(s)	278, 372, 440, 464
Bme18I	GGWCC	2 cut(s)	529, 556
BmgBI	CACGTC	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	529, 556
BmiI	GGNNCC	2 cut(s)	168, 530
BoxI	GACNNNNGTC	1 cut(s)	364
BsaI	GGTCTC	2 cut(s)	370, 465
BsaJI	CCNNGG	3 cut(s)	457, 477, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse3DI	GCAATG	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	457, 477, 552
BseGI	GGATG	4 cut(s)	72, 396, 505, 532
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	263, 357
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	2 cut(s)	456, 482
BsiHKAI	GWGCWC	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	370, 465
BsnI	GGCC	2 cut(s)	456, 482
Bso31I	GGTCTC	2 cut(s)	370, 465
Bsp1286I	GDGCHC	2 cut(s)	181, 552
Bsp143I	GATC	2 cut(s)	119, 586
Bsp19I	CCATGG	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	583
BspACI	CCGC	4 cut(s)	274, 438, 462, 577
BspANI	GGCC	2 cut(s)	456, 482
BspCNI	CTCAG	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	2 cut(s)	168, 530
BspPI	GGATC	1 cut(s)	114
BspTNI	GGTCTC	2 cut(s)	370, 465
BsrBI	CCGCTC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	408
BssECI	CCNNGG	3 cut(s)	457, 477, 552
BssMI	GATC	2 cut(s)	119, 586
BssT1I	CCWWGG	1 cut(s)	552
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	2 cut(s)	25, 322
BstC8I	GCNNGC	4 cut(s)	323, 454, 467, 581
BstDEI	CTNAG	1 cut(s)	244
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	4 cut(s)	72, 396, 505, 532
BstFNI	CGCG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	2 cut(s)	122, 589
BstMAI	GTCTC	2 cut(s)	370, 465
BstMBI	GATC	2 cut(s)	119, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	462
BstPAI	GACNNNNGTC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	263, 357
BstX2I	RGATCY	2 cut(s)	119, 586
BstYI	RGATCY	2 cut(s)	119, 586
BsuRI	GGCC	2 cut(s)	456, 482
BtgI	CCRYGG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	81
BtsCI	GGATG	4 cut(s)	72, 396, 505, 532
BtsIMutI	CAGTG	1 cut(s)	252
BtuMI	TCGCGA	1 cut(s)	583
Cac8I	GCNNGC	4 cut(s)	323, 454, 467, 581
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	529, 556
Csp6I	GTAC	1 cut(s)	502
CspCI	CAANNNNNGTGG	2 cut(s)	120, 155
CviAII	CATG	2 cut(s)	224, 553
CviJI	RGCY	9 cut(s)	59, 167, 212, 441, 452, 456, 482, 550, 594
CviKI_1	RGCY	9 cut(s)	59, 167, 212, 441, 452, 456, 482, 550, 594
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	244
DpnI	GATC	2 cut(s)	121, 588
DpnII	GATC	2 cut(s)	119, 586
DraIII	CACNNNGTG	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	25, 322
EarI	CTCTTC	2 cut(s)	25, 322
Eco130I	CCWWGG	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	552
Eco31I	GGTCTC	2 cut(s)	370, 465
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	2 cut(s)	529, 556
EcoRV	GATATC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	552
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	2 cut(s)	227, 556
FaiI	YATR	3 cut(s)	225, 488, 554
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	2 cut(s)	223, 552
Fnu4HI	GCNGC	4 cut(s)	277, 371, 439, 463
FokI	GGATG	4 cut(s)	59, 383, 492, 519
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	4 cut(s)	277, 371, 439, 463
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	4 cut(s)	277, 371, 439, 463
HaeIII	GGCC	2 cut(s)	456, 482
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	2 cut(s)	227, 556
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	2 cut(s)	284, 333
Hpy166II	GTNNAC	3 cut(s)	241, 250, 502
Hpy188I	TCNGA	6 cut(s)	119, 174, 289, 351, 359, 510
Hpy188III	TCNNGA	2 cut(s)	123, 582
Hpy8I	GTNNAC	3 cut(s)	241, 250, 502
Hpy99I	CGWCG	2 cut(s)	370, 572
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	462
HpyF3I	CTNAG	1 cut(s)	244
HpySE526I	ACGT	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	227, 556
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	119, 586
LmnI	GCTCC	2 cut(s)	172, 395
LpnPI	CCDG	3 cut(s)	136, 438, 575
Lsp1109I	GCAGC	2 cut(s)	263, 357
MaeII	ACGT	1 cut(s)	80
MalI	GATC	2 cut(s)	121, 588
MbiI	CCGCTC	1 cut(s)	579
MboI	GATC	2 cut(s)	119, 586
MboII	GAAGA	2 cut(s)	12, 339
MflI	RGATCY	2 cut(s)	119, 586
MhlI	GDGCHC	2 cut(s)	181, 552
MluCI	AATT	3 cut(s)	43, 113, 314
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	2 cut(s)	83, 161
MspA1I	CMGCKG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	119, 586
NlaIII	CATG	2 cut(s)	227, 556
NlaIV	GGNNCC	2 cut(s)	168, 530
NmeAIII	GCCGAG	3 cut(s)	399, 438, 458
NruI	TCGCGA	1 cut(s)	583
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	284, 333
PflMI	CCANNNNNTGG	1 cut(s)	525
PkrI	GCNGC	4 cut(s)	278, 372, 440, 464
PshAI	GACNNNNGTC	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	168, 530
PspPI	GGNCC	2 cut(s)	529, 556
PsuI	RGATCY	2 cut(s)	119, 586
RruI	TCGCGA	1 cut(s)	583
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	2 cut(s)	83, 161
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	4 cut(s)	277, 371, 439, 463
Sau3AI	GATC	2 cut(s)	119, 586
Sau96I	GGNCC	2 cut(s)	529, 556
SduI	GDGCHC	2 cut(s)	181, 552
SetI	ASST	8 cut(s)	61, 83, 111, 195, 305, 386, 429, 454
SinI	GGWCC	2 cut(s)	529, 556
SmiMI	CAYNNNNRTG	2 cut(s)	83, 161
Sse9I	AATT	3 cut(s)	43, 113, 314
SsiI	CCGC	4 cut(s)	274, 438, 462, 577
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	1 cut(s)	47
TasI	AATT	3 cut(s)	43, 113, 314
TauI	GCSGC	2 cut(s)	441, 465
TfiI	GAWTC	2 cut(s)	284, 333
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	2 cut(s)	276, 370
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	1 cut(s)	252
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	2 cut(s)	529, 556
XapI	RAATTY	3 cut(s)	43, 113, 314
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.