Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Forward (+)

56791886 .. 56795151

Gene Structure 3266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0479000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAATAGAGCCTTCAGAACTCTTCTGGCTGAGACCGTAAATTTCAGCAAGAGCCATAAACCTACATATTGGCTTGAAAATAACGGTTCCAAACCAACATTCTGGCTTCCAAATATCGTCCAGGTAAAGGAAGGGACAGCCGCTGTAGTTGAGCGGCAAGGTGAATACTTCAAAACCCTAAAGACTGGATTTCACCATCTTCAAAATAACAAGGATAGGGTTGTCAGCGTAATGACAACCACACCGGTATCTCTTCGGCCTCCTATAAAGAAAGAATTATATATTCGGACCAAGAACGGCAAAATATATTATCCACAAGCCTCGGTGCGAATCAAGATCCTGGACCCCAAGTGTGCTTGGTATAGCTTTCGTAAACTTTCTGAGCTTACCCAACCGAGAAGAGATCAAACAGGTCAAAACATGTACACTGCAGAGCAGACATTTGTACAACTCTTTAGGATGGCCATGCCAAATAATCCTTTTCATTATTTTTCAACAGTGGCCCAAATGCTCAATTACGGACATTTTATGATGATGATAAATGAACGAACAGTTGGTGAATATAGTGAAGAGGAGATACTTGAGGCAAACAAAGAACTCAATGAAGACTTAAAGCTCGACCTCAAGGAATTTGCACGATGTGGTTTTGAGTTCATTGACCATTCTTTTGGACTATTTCCTACCTCCTTTGACCTGGGGGAAAACTTAAAATCAAAAGCTGCCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

242

Amino Acids

28.22

Weight (kDa)

9.18

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	2 cut(s)	141, 154
AclWI	GGATC	1 cut(s)	331
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	40, 629
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	425, 447
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	420
AgeI	ACCGGT	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	77, 172, 203, 495
AjnI	CCWGG	3 cut(s)	120, 339, 693
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 537, 569
AluBI	AGCT	4 cut(s)	366, 385, 616, 719
AluI	AGCT	4 cut(s)	366, 385, 616, 719
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	3 cut(s)	257, 462, 501
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	2 cut(s)	40, 629
ArsI	GACNNNNNNTTYG	2 cut(s)	650, 682
AsiGI	ACCGGT	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	288, 343, 502
AsuHPI	GGTGA	3 cut(s)	173, 185, 569
AvaII	GGWCC	2 cut(s)	288, 343
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BalI	TGGCCA	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	561, 593
BbsI	GAAGAC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	2 cut(s)	204, 454
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	3 cut(s)	122, 341, 695
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	2 cut(s)	144, 429
BisI	GCNGC	3 cut(s)	141, 155, 720
BlsI	GCNGC	3 cut(s)	142, 156, 721
Bme1390I	CCNGG	3 cut(s)	122, 341, 695
Bme18I	GGWCC	2 cut(s)	288, 343
BmgT120I	GGNCC	3 cut(s)	288, 343, 502
BmiI	GGNNCC	2 cut(s)	88, 345
BmrFI	CCNGG	3 cut(s)	122, 341, 695
BpiI	GAAGAC	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	602, 608
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	321, 694
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	190
BseBI	CCWGG	3 cut(s)	122, 341, 695
BseDI	CCNNGG	2 cut(s)	321, 694
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	2 cut(s)	21, 372
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	587
BseXI	GCAGC	1 cut(s)	706
BshFI	GGCC	3 cut(s)	259, 464, 503
BshTI	ACCGGT	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	259, 464, 503
Bso31I	GGTCTC	1 cut(s)	26
Bsp1407I	TGTACA	2 cut(s)	423, 445
Bsp143I	GATC	2 cut(s)	336, 403
BspACI	CCGC	2 cut(s)	141, 154
BspANI	GGCC	3 cut(s)	259, 464, 503
BspCNI	CTCAG	2 cut(s)	22, 373
BspLI	GGNNCC	2 cut(s)	88, 345
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	244
BsrGI	TGTACA	2 cut(s)	423, 445
BsrI	ACTGG	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	2 cut(s)	321, 694
BssMI	GATC	2 cut(s)	336, 403
Bst2UI	CCWGG	3 cut(s)	122, 341, 695
Bst4CI	ACNGT	4 cut(s)	37, 86, 499, 553
Bst6I	CTCTTC	4 cut(s)	27, 258, 394, 564
BstAUI	TGTACA	2 cut(s)	423, 445
BstDEI	CTNAG	2 cut(s)	30, 381
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	2 cut(s)	339, 406
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	336, 403
BstNI	CCWGG	3 cut(s)	122, 341, 695
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	3 cut(s)	120, 339, 693
BstSFI	CTRYAG	2 cut(s)	144, 429
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	336
BstXI	CCANNNNNNTGG	2 cut(s)	102, 668
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	259, 464, 503
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 504
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	288, 343, 502
Csp6I	GTAC	2 cut(s)	424, 446
CspAI	ACCGGT	1 cut(s)	244
CviAII	CATG	2 cut(s)	421, 466
CviQI	GTAC	2 cut(s)	424, 446
DdeI	CTNAG	2 cut(s)	30, 381
DpnI	GATC	2 cut(s)	338, 405
DpnII	GATC	2 cut(s)	336, 403
DraIII	CACNNNGTG	1 cut(s)	641
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	4 cut(s)	27, 258, 394, 564
EarI	CTCTTC	4 cut(s)	27, 258, 394, 564
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	288, 343
EcoRII	CCWGG	3 cut(s)	120, 339, 693
FaeI	CATG	2 cut(s)	424, 469
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	420, 465
Fnu4HI	GCNGC	3 cut(s)	141, 155, 720
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	141, 155, 720
GluI	GCNGC	3 cut(s)	141, 155, 720
HaeIII	GGCC	3 cut(s)	259, 464, 503
HapII	CCGG	1 cut(s)	245
Hin1II	CATG	2 cut(s)	424, 469
HinfI	GANTC	1 cut(s)	330
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	3 cut(s)	173, 185, 569
Hpy166II	GTNNAC	2 cut(s)	374, 426
Hpy188I	TCNGA	3 cut(s)	17, 288, 382
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	2 cut(s)	374, 426
HpyAV	CCTTC	2 cut(s)	22, 125
HpyCH4III	ACNGT	4 cut(s)	37, 86, 499, 553
HpyCH4V	TGCA	2 cut(s)	431, 635
HpyF3I	CTNAG	2 cut(s)	30, 381
Hsp92II	CATG	2 cut(s)	424, 469
Kzo9I	GATC	2 cut(s)	336, 403
Lsp1109I	GCAGC	1 cut(s)	706
MalI	GATC	2 cut(s)	338, 405
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	2 cut(s)	336, 403
MboII	GAAGA	6 cut(s)	14, 191, 245, 411, 581, 617
MflI	RGATCY	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	4 cut(s)	40, 275, 514, 629
MluNI	TGGCCA	1 cut(s)	464
MnlI	CCTC	6 cut(s)	270, 331, 565, 577, 632, 694
Mox20I	TGGCCA	1 cut(s)	464
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	2 cut(s)	611, 707
Msp20I	TGGCCA	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	3 cut(s)	122, 341, 695
MvaI	CCWGG	3 cut(s)	122, 341, 695
NdeII	GATC	2 cut(s)	336, 403
NlaIII	CATG	2 cut(s)	424, 469
NlaIV	GGNNCC	2 cut(s)	88, 345
NspI	RCATGY	1 cut(s)	424
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	142, 156, 721
PscI	ACATGT	1 cut(s)	420
Psp6I	CCWGG	3 cut(s)	120, 339, 693
PspGI	CCWGG	3 cut(s)	120, 339, 693
PspN4I	GGNNCC	2 cut(s)	88, 345
PspPI	GGNCC	3 cut(s)	288, 343, 502
PstI	CTGCAG	1 cut(s)	433
PstNI	CAGNNNCTG	1 cut(s)	143
PsuI	RGATCY	1 cut(s)	336
RsaI	GTAC	2 cut(s)	425, 447
RsaNI	GTAC	2 cut(s)	424, 446
SaqAI	TTAA	2 cut(s)	611, 707
SatI	GCNGC	3 cut(s)	141, 155, 720
Sau3AI	GATC	2 cut(s)	336, 403
Sau96I	GGNCC	3 cut(s)	288, 343, 502
ScrFI	CCNGG	3 cut(s)	122, 341, 695
SfcI	CTRYAG	2 cut(s)	144, 429
SinI	GGWCC	2 cut(s)	288, 343
SmlI	CTYRAG	2 cut(s)	581, 623
SmoI	CTYRAG	2 cut(s)	581, 623
Sse9I	AATT	4 cut(s)	40, 275, 514, 629
SsiI	CCGC	2 cut(s)	141, 154
StyD4I	CCNGG	3 cut(s)	120, 339, 693
TaaI	ACNGT	4 cut(s)	37, 86, 499, 553
TaqI	TCGA	1 cut(s)	618
TasI	AATT	4 cut(s)	40, 275, 514, 629
TatI	WGTACW	2 cut(s)	423, 445
TauI	GCSGC	2 cut(s)	143, 157
TfiI	GAWTC	1 cut(s)	330
Tru1I	TTAA	2 cut(s)	611, 707
Tru9I	TTAA	2 cut(s)	611, 707
TscAI	CASTG	2 cut(s)	433, 504
TseI	GCWGC	1 cut(s)	719
TspDTI	ATGAA	5 cut(s)	17, 473, 558, 618, 643
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	433, 504
VpaK11BI	GGWCC	2 cut(s)	288, 343
XapI	RAATTY	2 cut(s)	40, 629
XceI	RCATGY	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.