Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001857

Physical Location & Seq

Genomic Coordinates Reverse (-)

89941616 .. 89949805

Gene Structure 8190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGTCCTCGCTGAGCAGAGAGCTTGTGTTTCTCATACTTCAGTTTCTGGATGAAGAGAAATTCAAAGAGAGTGTTCACAAGTTGGAGCAAGAGTCAGGGTTTTTCTTTAACATGAGGTACTTTGAAGATATGGTGACAAATGGGGAGTGGGAAGAGGTGGAGAAGTATTTGAGGGATCGAGCAAAAGCTGTGGACATTTTAGTCAAGGACTTGAAAGTGTTTGCAGCATTCAATGAAGAACTTTTTAAGGAAATTACACAGCTGTTGACTCTGGATAACTTTAGGGATAATGAACAGTTATCTAAGTATGGTGATACAAAGTCTGCAAGGGGTATAATGCTTGCTGAACTGAAAAAGTTAATAGAGGCTAACCCATTGTTTCGTGATAAACTTCAATTTCCTACCCTGAAAAACTCAAGATTGCGGACTCTTATCAATCAGAGCTTAAACTGGCAGCACCAGCTTTGTAAGAATCCAAGGCCTAACCCTGACATAAAGACCCTATTTGTAGACCATAGCTGTGGACAACCGAATGGTGCCAGGGCTCCATCCCCTGTTACTAATCATTTAATGGGGGCAGTCCCAAAGACGGGGGTTTCCCACCACTTGCCCTTTCAGCCCACACCTGCTGCGCTTCCAACATCTCTTGCTGGATGGATGGCCAACTCATCACCTGTGCCTCATCCCTCTGCTTCCGCTGGGCCGATGGGTTTGGCTGCAGCTAACAATGCAGGAGCCCTCTTAAAGCGCCCTAGAACTCCTCCTACCAATAACCCAGCTATGGACTATCAAACAGCAGATTCTGAACATGTGATGAAGAGATCAAGACCTTTTGGAGTAACAGATGAGGCAAATAATCTGCCAGTAAATATTCTGCCAGTTGCTTATCCTAACCAGAGCCATGGTCAGAGTTCCTACTCTACTGATGACTTGCCCAGGAATGTAGTCATGACAATAAATCCAGGTTCAGCTGTCAAGAGTATGGATTTCCACCCTGTGCAACAGATTCTACTACTTGTTGGAACAAATATGGGTGATGTCATGGTATATGAGTTACCAAGCCATGAAAGAATTGCTATTAGGAACTTCAAAGCCTGGGACCTTGCACAATGTTCAGTGGCTCTGCAGGCAACTTTGGCCAATGATTATACAGCATCGATCAACCGTGTAGTGTGGAGTCCTGATGGAACTCTTTTTGGGGTTGCATACTCTAAGCATCTAGTTCACATATACTCCTATCATGGTGGTGATGATTTAAGAAATCACCTAGAGATTGAGGCACATGCTGGCAGTGTTAATGATCTTGCTTTCTCATATCCAAACAAACAGCTCTGTGTTGTGACTTGTGGCGAGGATAGGGTTATCAAGGTGTGGGATGCTGTCACTGGGGCTAAGCAGCATACATTTGAGGGCCACGAAGCACCTGTATACTCGGTGTGCCCGCATCACAAGGAGAGTATTCAGTTTATTTTCTCGACAGCAACTGATGGAAAAATAAAGGCATGGCTGTATGATAATGTGGGCTCAAGAGTTGACTATGATGCGCCAGGACATTCGTCTACCACTATGGCATACAGTGCTGATGGATCAAGGCTATTCTCGTGTGGGACAAACAAAGAAGGGGAATCATACTTGGTGGAATGGAATGAAAGTGAAGGAGCTGTAAAGCGTACCTATCATGGTCTTGGGAAGCGGACTGTTGGGGTTGTGCAGTTTGATACCACCAAGAATCGATTCTTGGCTACTGGTGATGAGTTCATGGTTAAATTCTGGGACATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCCGGCTTCTCCTTCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATTCTAGCAAATTCAGATGGATTTAGGTTGCTGAGAACAGTGGAGAGTCGTACATTTGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGCCCCAGCAATAGGAGCATTTGGATCGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCGGTGCCAGCCATGGTTGGACTGAACAATGACAGTCGAAGTTTGGCTGACGTGAAACCTAGAATTGTTGATGAGTCGATAGAGAAATCCAGGATCTGGAAACTGACTGAAATCAATGAACCATCACAATGCCGGTCTCTGAGGCTTCCTGATAATTTAACGGCAATGAGGGTGTCTAGGTTAATTTACACAAATTCAGGACTTGCCATATTGGCATTATCATCTAATGCTGTGCACAAGCTCTGGAAATGGCAACGAAATGACAGAACCACGATAGGGAAGGCCACAGCTAGTATTGTACCACAACTGTGGCAACCTGCAAGTGGCATACTGATGACTAATGATATAAGTGATACAAACCCTGAAGATGCTGTTCCATGCTTTGCACTATCAAAAAATGACTCTTACGTTATGTCAGCTTCAGGGGGGAAAATATCCCTGTTCAATATGATGACATTTAAGACGATGACAACATTCATGCCTCCACCCCCAGCTGCCACATATTTGGCATTTCATCCCCAAGACAATAATATCATTGCCATCGGCATGGAAGATTCTTCCATCCAGATTTACAATGTTCGGGTTGATGAGGTTAAAACTAAGCTAAAAGGTCATCAGAAAAGAATAACGGGCCTTGCCTTCTCGCATGTTCTTAATGTGCTTGTCTCCTCGGGAGCCGATTCTCAGTTGTGTGTTTGGAACACAGATGGATGGGAGAGGCAAGCGAGTAAATTCCTTCAGATTCCAAGTGGGCGAGCTGCTGCCCCTCTTGCAGATACTCGGGTTCAGTTCCACTTGGATCAGATACACTTGCTGGCAGTTCATGAAACACAGATAGCCATTTACGAAGCACCAAAATTAGAATGCCTCAAGCAGTGGGTTCCACGAGAGGCTAGTGGTCCAATCACACATGCTGCTTATTCCTGTGATAGCCAGTCAATTTATGTTAGCTTTGAAGATGGAAGTGTGGGGGTTCTTACTGCCACAACCCTCAGGTTGAGATGCCGAATATTACCAGCTGCTTATTTACCTCCAAATCCAAGCTTAAGAGTGTATCCTCTTGTTGTCGCGGCACATCCATCGGATCCCAATCAGTTTGCACTAGGTCTTACAGATGGTGGAGTGCATGTACTTGAGCCATTAGAATCAGAAGGAAAATGGGGCACCTCCTCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0010014 GO:0010016 GO:0010072 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0090421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

1079

Amino Acids

118.78

Weight (kDa)

6.49

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH_TPL	PF17814	5 - 34	1.5e-12	LisH-like dimerisation domain
TPR1-like_2nd	PF21889	58 - 131	9.6e-31	TPR1-like, CTLH-containing domain
zf_topless	PF21359	134 - 174	9.6e-25	TOPLESS, zinc finger domain
Beta-prop_EML_2	PF23414	313 - 440	5e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd	PF25172	324 - 539	1.1e-10	WDR3 second beta-propeller domain
Beta-prop_RIG_2nd	PF23775	328 - 478	1.2e-07	RIG second beta-propeller
Beta-prop_WDR3_1st	PF25173	361 - 540	1.1e-16	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	380 - 538	2.4e-08	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	383 - 596	3.4e-19	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	385 - 643	4.3e-24	THOC3 beta-propeller domain
WDR55	PF24796	385 - 502	6.4e-07	WDR55
WD40_WDHD1_1st	PF24817	399 - 505	9.7e-11	WDHD1 first WD40 domain
Beta-prop_EML	PF23409	423 - 631	2.3e-07	Echinoderm microtubule-associated protein first beta-propeller
WD40_Prp19	PF24814	443 - 634	5e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	790 - 926	5.4e-13	CDC20/Fizzy WD40 domain
Beta-prop_EML_2	PF23414	806 - 928	1.9e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	806 - 1021	1.8e-10	THOC3 beta-propeller domain
WD40_Prp19	PF24814	806 - 1005	3.9e-16	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	807 - 923	1e-15	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	807 - 1012	8e-15	WDHD1 first WD40 domain
WDR55	PF24796	808 - 922	8.7e-07	WDR55
Beta-prop_WDR36-Utp21_2nd	PF25168	809 - 921	8e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	810 - 1012	2.9e-16	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	813 - 930	1.5e-11	WDR3 second beta-propeller domain
Beta-prop_IFT140_1st	PF23383	825 - 931	1.3e-09	IFT140 first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	826 - 922	6.7e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	830 - 924	8.2e-08	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001857)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15880 AT3G15880 AT3G15880 AT3G15880
fragaria_vesca	FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730 FvH4_1g02730
malus_domestica	MD02G1027700.v1.1 MD11G1043800.v1.1 MD15G1169300.v1.1
prunus_persica	Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.3G087700_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1 Prupe.7G247300_v2.0.a1
pyrus_communis	pycom12419g00020
rosa_chinensis	RchiOBHm_Chr2g0087841
rosa_laevigata	RLG00000015906 RLG00000019456
rosa_multiflora	Rmu_sc0008385.1_g000016
rosa_roxburghii	Rroxscaffold_2G00153180
rosa_rugosa	Rorug01G0479000 Rorug01G0479000 Rorug02G0324100 Rorug02G0324100
rosa_samantha	Rh2BG032700
rosa_wichuraiana	Rw2G002610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	634
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc36I	ACCTGC	2 cut(s)	634, 2386
AccB1I	GGYRCC	3 cut(s)	536, 2065, 3224
AccB7I	CCANNNNNTGG	1 cut(s)	2157
AccI	GTMKAC	3 cut(s)	510, 1428, 1559
AccII	CGCG	1 cut(s)	3131
AciI	CCGC	5 cut(s)	424, 696, 1442, 1693, 3131
AclWI	GGATC	7 cut(s)	183, 1594, 2023, 2162, 2868, 3140, 3153
AcoI	YGGCCR	2 cut(s)	660, 1137
AcsI	RAATTY	6 cut(s)	59, 1766, 1899, 1909, 2254, 2792
AcuI	CTGAAG	4 cut(s)	23, 2445, 2466, 2783
AdeI	CACNNNGTG	1 cut(s)	997
AfaI	GTAC	6 cut(s)	119, 1672, 1804, 1951, 2361, 3192
AfiI	CCNNNNNNNGG	7 cut(s)	589, 590, 781, 2003, 2157, 2337, 2384
AflII	CTTAAG	1 cut(s)	3106
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	8 cut(s)	64, 125, 214, 232, 395, 1090, 2506, 3017
AjiI	CACGTC	1 cut(s)	2113
AjnI	CCWGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
AjuI	GAANNNNNNNTTGG	4 cut(s)	1718, 1721, 1750, 1753
AleI	CACNNNNGTG	1 cut(s)	2368
Alw21I	GWGCWC	1 cut(s)	2298
Alw26I	GTCTC	3 cut(s)	1879, 2202, 2731
Alw44I	GTGCAC	1 cut(s)	2294
AlwI	GGATC	7 cut(s)	183, 1594, 2023, 2162, 2868, 3140, 3153
AlwNI	CAGNNNCTG	4 cut(s)	46, 803, 1484, 2157
Ama87I	CYCGRG	2 cut(s)	2731, 2841
AoxI	GGCC	8 cut(s)	479, 660, 701, 1137, 1411, 1992, 2343, 2692
ApaLI	GTGCAC	1 cut(s)	2294
ApoI	RAATTY	6 cut(s)	59, 1766, 1899, 1909, 2254, 2792
Asp700I	GAANNNNTTC	1 cut(s)	1733
AspLEI	GCGC	3 cut(s)	634, 750, 1546
AspS9I	GGNCC	6 cut(s)	701, 1099, 1411, 1993, 2692, 2960
AsuHPI	GGTGA	7 cut(s)	145, 323, 663, 1046, 1256, 1259, 1760
AvaI	CYCGRG	2 cut(s)	2731, 2841
AvaII	GGWCC	2 cut(s)	1099, 2960
AxyI	CCTNAGG	1 cut(s)	3053
BaeGI	GKGCMC	3 cut(s)	1442, 2298, 3227
BaeI	ACNNNNGTAYC	2 cut(s)	2829, 2862
BalI	TGGCCA	2 cut(s)	662, 1139
BamHI	GGATCC	1 cut(s)	3145
BanI	GGYRCC	3 cut(s)	536, 2065, 3224
BanII	GRGCYC	3 cut(s)	547, 739, 1526
BauI	CACGAG	2 cut(s)	1600, 2946
Bbv12I	GWGCWC	1 cut(s)	2298
BceAI	ACGGC	1 cut(s)	2238
BcgI	CGANNNNNNTGC	4 cut(s)	1998, 2032, 3123, 3157
BciT130I	CCWGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
BciVI	GTATCC	1 cut(s)	3126
BcoDI	GTCTC	3 cut(s)	1879, 2202, 2731
BfaI	CTAG	9 cut(s)	753, 1220, 1268, 1904, 2121, 2238, 2352, 2955, 3164
BfmI	CTRYAG	2 cut(s)	717, 1124
BfoI	RGCGCY	1 cut(s)	751
BfrI	CTTAAG	1 cut(s)	3106
BfuAI	ACCTGC	2 cut(s)	634, 2386
BfuI	GTATCC	1 cut(s)	3126
BglI	GCCNNNNNGGC	1 cut(s)	2273
BlpI	GCTNAGC	2 cut(s)	11, 1392
Bme1390I	CCNGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
Bme18I	GGWCC	2 cut(s)	1099, 2960
BmeT110I	CYCGRG	2 cut(s)	2731, 2841
BmgBI	CACGTC	1 cut(s)	2113
BmgT120I	GGNCC	6 cut(s)	701, 1099, 1411, 1993, 2692, 2960
BmrFI	CCNGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
BmrI	ACTGGG	1 cut(s)	1395
BmsI	GCATC	9 cut(s)	1163, 1225, 1366, 1453, 1531, 1798, 1948, 2419, 3053
BmuI	ACTGGG	1 cut(s)	1395
BoxI	GACNNNNGTC	1 cut(s)	1555
Bpu1102I	GCTNAGC	2 cut(s)	11, 1392
BpuEI	CTTGAG	4 cut(s)	400, 1510, 2915, 3215
Bsa29I	ATCGAT	2 cut(s)	1157, 1732
BsaBI	GATNNNNATC	1 cut(s)	3150
BsaI	GGTCTC	1 cut(s)	2202
BsaJI	CCNNGG	7 cut(s)	476, 540, 901, 935, 1095, 2073, 2730
BsaWI	WCCGGW	1 cut(s)	2062
BsaXI	ACNNNNNCTCC	6 cut(s)	77, 107, 1217, 1247, 3174, 3204
Bsc4I	CCNNNNNNNGG	7 cut(s)	589, 590, 781, 2003, 2157, 2337, 2384
Bse118I	RCCGGY	2 cut(s)	1825, 2193
Bse1I	ACTGG	6 cut(s)	455, 863, 878, 1390, 1750, 2995
Bse21I	CCTNAGG	1 cut(s)	3053
Bse3DI	GCAATG	2 cut(s)	2232, 2595
Bse8I	GATNNNNATC	1 cut(s)	3150
BseBI	CCWGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
BseCI	ATCGAT	2 cut(s)	1157, 1732
BseDI	CCNNGG	7 cut(s)	476, 540, 901, 935, 1095, 2073, 2730
BseJI	GATNNNNATC	1 cut(s)	3150
BseLI	CCNNNNNNNGG	7 cut(s)	589, 590, 781, 2003, 2157, 2337, 2384
BseMI	GCAATG	2 cut(s)	2232, 2595
BseMII	CTCAG	4 cut(s)	1922, 2192, 2759, 3067
BseNI	ACTGG	6 cut(s)	455, 863, 878, 1390, 1750, 2995
BseRI	GAGGAG	3 cut(s)	750, 2719, 3220
BseSI	GKGCMC	3 cut(s)	1442, 2298, 3227
BseYI	CCCAGC	4 cut(s)	698, 775, 1996, 2551
BsgI	GTGCAG	1 cut(s)	1730
Bsh1236I	CGCG	1 cut(s)	3131
BshFI	GGCC	8 cut(s)	481, 662, 703, 1139, 1413, 1994, 2345, 2694
BshNI	GGYRCC	3 cut(s)	536, 2065, 3224
BshVI	ATCGAT	2 cut(s)	1157, 1732
BsiHKAI	GWGCWC	1 cut(s)	2298
BsiHKCI	CYCGRG	2 cut(s)	2731, 2841
BsiSI	CCGG	3 cut(s)	1826, 2063, 2194
BslFI	GGGAC	4 cut(s)	566, 1112, 1621, 1787
BslI	CCNNNNNNNGG	7 cut(s)	589, 590, 781, 2003, 2157, 2337, 2384
BsmAI	GTCTC	3 cut(s)	1879, 2202, 2731
BsmFI	GGGAC	4 cut(s)	566, 1112, 1621, 1787
BsmI	GAATGC	2 cut(s)	227, 2930
BsnI	GGCC	8 cut(s)	481, 662, 703, 1139, 1413, 1994, 2345, 2694
Bso31I	GGTCTC	1 cut(s)	2202
BsoBI	CYCGRG	2 cut(s)	2731, 2841
Bsp1286I	GDGCHC	6 cut(s)	547, 739, 1442, 1526, 2298, 3227
Bsp1720I	GCTNAGC	2 cut(s)	11, 1392
Bsp19I	CCATGG	2 cut(s)	901, 2073
BspACI	CCGC	5 cut(s)	424, 696, 1442, 1693, 3131
BspANI	GGCC	8 cut(s)	481, 662, 703, 1139, 1413, 1994, 2345, 2694
BspCNI	CTCAG	4 cut(s)	1923, 2193, 2758, 3066
BspDI	ATCGAT	2 cut(s)	1157, 1732
BspFNI	CGCG	1 cut(s)	3131
BspHI	TCATGA	2 cut(s)	948, 2884
BspMAI	CTGCAG	2 cut(s)	721, 1128
BspMI	ACCTGC	2 cut(s)	634, 2386
BspPI	GGATC	7 cut(s)	183, 1594, 2023, 2162, 2868, 3140, 3153
BspT107I	GGYRCC	3 cut(s)	536, 2065, 3224
BspTI	CTTAAG	1 cut(s)	3106
BspTNI	GGTCTC	1 cut(s)	2202
BsrDI	GCAATG	2 cut(s)	2232, 2595
BsrFI	RCCGGY	2 cut(s)	1825, 2193
BsrI	ACTGG	6 cut(s)	455, 863, 878, 1390, 1750, 2995
BssAI	RCCGGY	2 cut(s)	1825, 2193
BssECI	CCNNGG	7 cut(s)	476, 540, 901, 935, 1095, 2073, 2730
BssNAI	GTATAC	1 cut(s)	1429
BssSI	CACGAG	2 cut(s)	1600, 2946
BssT1I	CCWWGG	3 cut(s)	476, 901, 2073
Bst1107I	GTATAC	1 cut(s)	1429
Bst2BI	CACGAG	2 cut(s)	1600, 2946
Bst2UI	CCWGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
Bst4CI	ACNGT	9 cut(s)	297, 1166, 1577, 1699, 1866, 1939, 2032, 2096, 2370
Bst6I	CTCTTC	3 cut(s)	48, 147, 812
BstAFI	CTTAAG	1 cut(s)	3106
BstAPI	GCANNNNNTGC	1 cut(s)	1577
BstC8I	GCNNGC	9 cut(s)	342, 1128, 1288, 1442, 1827, 2070, 2784, 2817, 2877
BstDEI	CTNAG	9 cut(s)	11, 303, 1212, 1392, 1931, 2201, 2661, 2745, 3053
BstDSI	CCRYGG	2 cut(s)	901, 2073
BstFNI	CGCG	1 cut(s)	3131
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	3 cut(s)	634, 750, 1546
BstMAI	GTCTC	3 cut(s)	1879, 2202, 2731
BstNI	CCWGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
BstNSI	RCATGY	5 cut(s)	812, 1286, 2711, 2975, 3191
BstPAI	GACNNNNGTC	1 cut(s)	1555
BstSCI	CCNGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
BstSFI	CTRYAG	2 cut(s)	717, 1124
BstSLI	GKGCMC	3 cut(s)	1442, 2298, 3227
BstUI	CGCG	1 cut(s)	3131
BstX2I	RGATCY	2 cut(s)	2154, 3145
BstXI	CCANNNNNNTGG	5 cut(s)	521, 902, 2370, 2566, 2608
BstYI	RGATCY	2 cut(s)	2154, 3145
BstZ17I	GTATAC	1 cut(s)	1429
Bsu15I	ATCGAT	2 cut(s)	1157, 1732
Bsu36I	CCTNAGG	1 cut(s)	3053
BsuI	GTATCC	1 cut(s)	3126
BsuRI	GGCC	8 cut(s)	481, 662, 703, 1139, 1413, 1994, 2345, 2694
BsuTUI	ATCGAT	2 cut(s)	1157, 1732
BtgI	CCRYGG	2 cut(s)	901, 2073
BtrI	CACGTC	1 cut(s)	2113
BtsI	GCAGTG	2 cut(s)	1297, 2942
BtsIMutI	CAGTG	6 cut(s)	1122, 1297, 1383, 1582, 1944, 2942
BveI	ACCTGC	2 cut(s)	634, 2386
Cac8I	GCNNGC	9 cut(s)	342, 1128, 1288, 1442, 1827, 2070, 2784, 2817, 2877
CaiI	CAGNNNCTG	4 cut(s)	46, 803, 1484, 2157
CciI	TCATGA	2 cut(s)	948, 2884
CfoI	GCGC	3 cut(s)	634, 750, 1546
Cfr10I	RCCGGY	2 cut(s)	1825, 2193
Cfr13I	GGNCC	6 cut(s)	701, 1099, 1411, 1993, 2692, 2960
ClaI	ATCGAT	2 cut(s)	1157, 1732
Csp6I	GTAC	6 cut(s)	118, 1671, 1803, 1950, 2360, 3191
CspCI	CAANNNNNGTGG	2 cut(s)	171, 206
CviQI	GTAC	6 cut(s)	118, 1671, 1803, 1950, 2360, 3191
DdeI	CTNAG	9 cut(s)	11, 303, 1212, 1392, 1931, 2201, 2661, 2745, 3053
DraIII	CACNNNGTG	1 cut(s)	997
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
EaeI	YGGCCR	2 cut(s)	660, 1137
Eam1104I	CTCTTC	3 cut(s)	48, 147, 812
EarI	CTCTTC	3 cut(s)	48, 147, 812
Eco130I	CCWWGG	3 cut(s)	476, 901, 2073
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	3 cut(s)	547, 739, 1526
Eco31I	GGTCTC	1 cut(s)	2202
Eco47I	GGWCC	2 cut(s)	1099, 2960
Eco57I	CTGAAG	4 cut(s)	23, 2445, 2466, 2783
Eco81I	CCTNAGG	1 cut(s)	3053
Eco88I	CYCGRG	2 cut(s)	2731, 2841
EcoO109I	RGGNCCY	2 cut(s)	1099, 1993
EcoRII	CCWGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
EcoT14I	CCWWGG	3 cut(s)	476, 901, 2073
EcoT38I	GRGCYC	3 cut(s)	547, 739, 1526
ErhI	CCWWGG	3 cut(s)	476, 901, 2073
FaqI	GGGAC	4 cut(s)	566, 1112, 1621, 1787
FauI	CCCGC	1 cut(s)	1449
FblI	GTMKAC	3 cut(s)	510, 1428, 1559
FriOI	GRGCYC	3 cut(s)	547, 739, 1526
FspBI	CTAG	9 cut(s)	753, 1220, 1268, 1904, 2121, 2238, 2352, 2955, 3164
GlaI	GCGC	3 cut(s)	633, 749, 1545
GsaI	CCCAGC	4 cut(s)	702, 779, 2000, 2555
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	8 cut(s)	481, 662, 703, 1139, 1413, 1994, 2345, 2694
HapII	CCGG	3 cut(s)	1826, 2063, 2194
HhaI	GCGC	3 cut(s)	634, 750, 1546
Hin6I	GCGC	3 cut(s)	632, 748, 1544
HinP1I	GCGC	3 cut(s)	632, 748, 1544
HincII	GTYRAC	3 cut(s)	267, 1534, 1789
HindII	GTYRAC	3 cut(s)	267, 1534, 1789
HindIII	AAGCTT	1 cut(s)	3103
HpaI	GTTAAC	1 cut(s)	1789
HpaII	CCGG	3 cut(s)	1826, 2063, 2194
HphI	GGTGA	7 cut(s)	145, 323, 663, 1046, 1256, 1259, 1760
HpyAV	CCTTC	9 cut(s)	1613, 1649, 1845, 1850, 1984, 2335, 2710, 2807, 3206
HpyCH4III	ACNGT	9 cut(s)	297, 1166, 1577, 1699, 1866, 1939, 2032, 2096, 2370
HpyCH4IV	ACGT	2 cut(s)	2112, 2469
HpyF3I	CTNAG	9 cut(s)	11, 303, 1212, 1392, 1931, 2201, 2661, 2745, 3053
HpySE526I	ACGT	2 cut(s)	2112, 2469
HspAI	GCGC	3 cut(s)	632, 748, 1544
KroI	GCCGGC	1 cut(s)	1825
KroNI	GCCGGC	1 cut(s)	1827
KspAI	GTTAAC	1 cut(s)	1789
LmnI	GCTCC	7 cut(s)	85, 550, 734, 1658, 2006, 2065, 2735
LweI	GCATC	9 cut(s)	1163, 1225, 1366, 1453, 1531, 1798, 1948, 2419, 3053
MaeI	CTAG	9 cut(s)	753, 1220, 1268, 1904, 2121, 2238, 2352, 2955, 3164
MaeII	ACGT	2 cut(s)	2112, 2469
MaeIII	GTNAC	6 cut(s)	133, 556, 838, 1053, 1339, 1381
MboII	GAAGA	9 cut(s)	65, 137, 164, 248, 829, 2438, 2610, 2624, 3029
MflI	RGATCY	2 cut(s)	2154, 3145
MhlI	GDGCHC	6 cut(s)	547, 739, 1442, 1526, 2298, 3227
MlsI	TGGCCA	2 cut(s)	662, 1139
MluNI	TGGCCA	2 cut(s)	662, 1139
MlyI	GAGTC	7 cut(s)	101, 262, 421, 1186, 1954, 2144, 2456
MmeI	TCCRAC	5 cut(s)	63, 662, 1000, 2014, 2059
Mox20I	TGGCCA	2 cut(s)	662, 1139
MroNI	GCCGGC	1 cut(s)	1825
MroXI	GAANNNNTTC	1 cut(s)	1733
MscI	TGGCCA	2 cut(s)	662, 1139
MslI	CAYNNNNRTG	6 cut(s)	519, 1245, 2188, 2368, 2393, 2606
Msp20I	TGGCCA	2 cut(s)	662, 1139
MspA1I	CMGCKG	5 cut(s)	262, 698, 971, 2555, 3080
MspCI	CTTAAG	1 cut(s)	3106
MspI	CCGG	3 cut(s)	1826, 2063, 2194
MspR9I	CCNGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
Mva1269I	GAATGC	2 cut(s)	227, 2930
MvaI	CCWGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
MvnI	CGCG	1 cut(s)	3131
NaeI	GCCGGC	1 cut(s)	1827
NcoI	CCATGG	2 cut(s)	901, 2073
NgoMIV	GCCGGC	1 cut(s)	1825
NmuCI	GTSAC	3 cut(s)	133, 1339, 1381
NspI	RCATGY	5 cut(s)	812, 1286, 2711, 2975, 3191
OliI	CACNNNNGTG	1 cut(s)	2368
PagI	TCATGA	2 cut(s)	948, 2884
PaqCI	CACCTGC	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	808
PctI	GAATGC	2 cut(s)	227, 2930
PdiI	GCCGGC	1 cut(s)	1827
PdmI	GAANNNNTTC	1 cut(s)	1733
PflMI	CCANNNNNTGG	1 cut(s)	2157
PfoI	TCCNGGA	1 cut(s)	2150
PleI	GAGTC	7 cut(s)	100, 262, 421, 1185, 1953, 2143, 2456
PpsI	GAGTC	7 cut(s)	100, 262, 421, 1185, 1953, 2143, 2456
PpuMI	RGGWCCY	1 cut(s)	1099
PscI	ACATGT	1 cut(s)	808
PshAI	GACNNNNGTC	1 cut(s)	1555
Psp5II	RGGWCCY	1 cut(s)	1099
Psp6I	CCWGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
PspFI	CCCAGC	4 cut(s)	698, 775, 1996, 2551
PspGI	CCWGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
PspPI	GGNCC	6 cut(s)	701, 1099, 1411, 1993, 2692, 2960
PspPPI	RGGWCCY	1 cut(s)	1099
PsrI	GAACNNNNNNTAC	2 cut(s)	748, 780
PstI	CTGCAG	2 cut(s)	721, 1128
PstNI	CAGNNNCTG	4 cut(s)	46, 803, 1484, 2157
PsuI	RGATCY	2 cut(s)	2154, 3145
PvuII	CAGCTG	4 cut(s)	262, 971, 2555, 3080
RsaI	GTAC	6 cut(s)	119, 1672, 1804, 1951, 2361, 3192
RsaNI	GTAC	6 cut(s)	118, 1671, 1803, 1950, 2360, 3191
RseI	CAYNNNNRTG	6 cut(s)	519, 1245, 2188, 2368, 2393, 2606
Sau96I	GGNCC	6 cut(s)	701, 1099, 1411, 1993, 2692, 2960
SchI	GAGTC	7 cut(s)	101, 262, 421, 1186, 1954, 2144, 2456
ScrFI	CCNGG	6 cut(s)	541, 937, 963, 1096, 1548, 2152
SduI	GDGCHC	6 cut(s)	547, 739, 1442, 1526, 2298, 3227
SfaNI	GCATC	9 cut(s)	1163, 1225, 1366, 1453, 1531, 1798, 1948, 2419, 3053
SfcI	CTRYAG	2 cut(s)	717, 1124
SinI	GGWCC	2 cut(s)	1099, 2960
SmiMI	CAYNNNNRTG	6 cut(s)	519, 1245, 2188, 2368, 2393, 2606
SmlI	CTYRAG	5 cut(s)	415, 1525, 2930, 3106, 3194
SmoI	CTYRAG	5 cut(s)	415, 1525, 2930, 3106, 3194
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	5 cut(s)	424, 696, 1442, 1693, 3131
SspI	AATATT	2 cut(s)	871, 3072
SspMI	CTAG	9 cut(s)	753, 1220, 1268, 1904, 2121, 2238, 2352, 2955, 3164
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	6 cut(s)	539, 935, 961, 1094, 1546, 2150
StyI	CCWWGG	3 cut(s)	476, 901, 2073
TaaI	ACNGT	9 cut(s)	297, 1166, 1577, 1699, 1866, 1939, 2032, 2096, 2370
TaiI	ACGT	2 cut(s)	2115, 2472
TaqI	TCGA	7 cut(s)	178, 1157, 1475, 1732, 2053, 2098, 2138
TatI	WGTACW	2 cut(s)	1802, 3190
TauI	GCSGC	1 cut(s)	3134
TscAI	CASTG	6 cut(s)	1122, 1297, 1390, 1582, 1944, 2942
TseFI	GTSAC	3 cut(s)	133, 1339, 1381
Tsp45I	GTSAC	3 cut(s)	133, 1339, 1381
TspRI	CASTG	6 cut(s)	1122, 1297, 1390, 1582, 1944, 2942
Van91I	CCANNNNNTGG	1 cut(s)	2157
Vha464I	CTTAAG	1 cut(s)	3106
VneI	GTGCAC	1 cut(s)	2294
VpaK11BI	GGWCC	2 cut(s)	1099, 2960
XapI	RAATTY	6 cut(s)	59, 1766, 1899, 1909, 2254, 2792
XceI	RCATGY	5 cut(s)	812, 1286, 2711, 2975, 3191
XmiI	GTMKAC	3 cut(s)	510, 1428, 1559
XmnI	GAANNNNTTC	1 cut(s)	1733
XspI	CTAG	9 cut(s)	753, 1220, 1268, 1904, 2121, 2238, 2352, 2955, 3164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.